Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52238 * 2 1 4 4 C 1.53120 * 109.57407 * 239.84233 * 2 1 3 5 5 C 1.53033 * 109.27577 * 182.40990 * 4 2 1 6 6 N 1.46857 * 109.51385 * 59.18508 * 5 4 2 7 7 C 1.46901 * 110.98952 * 174.15031 * 6 5 4 8 8 C 1.50709 * 109.47147 * 294.20165 * 7 6 5 9 9 O 1.21291 * 119.99648 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00060 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99741 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00464 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99707 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47188 * 59.99940 * 15 13 11 17 17 H 1.48508 * 109.47030 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47066 * 299.99502 * 15 13 11 19 19 C 1.46838 * 111.19525 * 298.23760 * 6 5 4 20 20 H 1.08998 * 109.46926 * 301.74933 * 19 6 5 21 21 C 1.50706 * 109.46210 * 181.77231 * 19 6 5 22 22 O 1.20825 * 119.99859 * 339.97493 * 21 19 6 23 23 O 1.34224 * 120.00295 * 159.98452 * 21 19 6 24 24 C 1.53036 * 109.51429 * 61.75964 * 19 6 5 25 25 H 1.08999 * 109.47489 * 299.87408 * 1 2 3 26 26 H 1.09003 * 109.46805 * 59.87578 * 1 2 3 27 27 H 1.08996 * 109.47162 * 179.86800 * 1 2 3 28 28 H 1.09005 * 109.50288 * 302.34769 * 4 2 1 29 29 H 1.08993 * 109.50503 * 62.46931 * 4 2 1 30 30 H 1.09004 * 109.46263 * 179.19336 * 5 4 2 31 31 H 1.08995 * 109.46919 * 299.16345 * 5 4 2 32 32 H 1.08999 * 109.47084 * 54.20211 * 7 6 5 33 33 H 1.08993 * 109.46962 * 174.20149 * 7 6 5 34 34 H 0.96997 * 120.00205 * 0.02562 * 10 8 7 35 35 H 0.96994 * 120.00130 * 180.02562 * 14 13 11 36 36 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 37 37 H 1.09005 * 109.50466 * 60.75951 * 24 19 6 38 38 H 1.09004 * 109.50172 * 180.86873 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7735 -1.2104 6 7 4.0113 -1.4769 0.0017 7 6 5.4683 -1.6646 0.0024 8 6 5.8555 -2.5947 -1.1185 9 8 5.0017 -3.0553 -1.8465 10 7 7.1505 -2.9137 -1.3125 11 6 7.5027 -3.7601 -2.3318 12 1 6.7423 -4.1710 -2.9796 13 6 8.8377 -4.0895 -2.5315 14 7 9.7628 -3.5892 -1.7436 15 14 9.3175 -5.2423 -3.9208 16 1 8.8945 -4.6568 -5.2183 17 1 10.7905 -5.4316 -3.9205 18 1 8.6493 -6.5544 -3.7284 19 6 3.5709 -0.7731 1.2129 20 1 3.9665 0.2425 1.2071 21 6 4.0782 -1.5027 2.4300 22 8 4.4125 -2.6606 2.3446 23 8 4.1586 -0.8662 3.6090 24 6 2.0417 -0.7243 1.2482 25 1 -0.3634 0.5119 0.8911 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0276 -0.0024 28 1 1.6469 -1.7401 -1.2671 29 1 1.7175 -0.1892 -2.1392 30 1 3.9401 -1.3016 -2.0901 31 1 3.9679 0.2420 -1.2047 32 1 5.9588 -0.7015 -0.1388 33 1 5.7787 -2.0943 0.9547 34 1 7.8333 -2.5450 -0.7305 35 1 10.6948 -3.8188 -1.8833 36 1 4.4897 -1.3757 4.3613 37 1 1.6455 -1.7396 1.2679 38 1 1.7152 -0.1884 2.1395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129496889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = -151.691962 kcal Electronic energy + Delta-G solvation = -21516.987017 eV Core-core repulsion = 18165.134996 eV Total energy + Delta-G solvation = -3351.852021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86873 -40.29160 -39.20460 -37.14447 -36.09595 -35.28717 -33.29087 -32.35261 -30.35071 -27.67361 -25.95286 -25.67267 -23.71515 -21.78795 -21.07539 -20.68149 -19.90452 -19.05880 -17.97080 -17.55839 -16.88436 -16.67070 -16.44200 -16.16254 -15.68889 -15.39071 -15.09559 -14.81572 -14.70640 -14.07587 -13.91371 -13.65777 -13.45434 -13.23802 -12.90645 -12.74455 -12.55280 -12.44552 -12.36069 -12.31418 -12.12560 -11.99808 -11.56839 -11.52046 -11.19607 -11.09672 -10.27965 -10.01632 -9.29343 -8.47102 -5.96298 1.13685 1.39076 1.40258 1.51858 1.89067 2.02988 2.27423 2.65036 3.18940 3.33087 3.71097 3.86126 3.89425 4.07935 4.11550 4.23826 4.33477 4.40564 4.46040 4.52168 4.74452 4.74644 4.82018 4.88390 5.03101 5.07863 5.24231 5.27653 5.38404 5.40619 5.55224 5.58440 5.80947 6.02990 6.08686 6.58613 7.00281 7.11107 7.53359 8.09165 8.70578 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004826 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.213945 B = 5800.460694 C = 6630.520157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.089 0.911 4 C -0.106 4.106 5 C 0.055 3.945 6 N -0.520 5.520 7 C 0.048 3.952 8 C 0.447 3.553 9 O -0.609 6.609 10 N -0.575 5.575 11 C -0.333 4.333 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.923 5.923 15 Si 0.996 3.004 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.274 1.274 19 C 0.093 3.907 20 H 0.098 0.902 21 C 0.482 3.518 22 O -0.534 6.534 23 O -0.504 6.504 24 C -0.095 4.095 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.394 0.606 35 H 0.278 0.722 36 H 0.428 0.572 37 H 0.059 0.941 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 12.113 9.076 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.071 4.071 6 N -0.247 5.247 7 C -0.083 4.083 8 C 0.234 3.766 9 O -0.495 6.495 10 N -0.212 5.212 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.564 5.564 15 Si 0.819 3.181 16 H -0.194 1.194 17 H -0.193 1.193 18 H -0.199 1.199 19 C -0.016 4.016 20 H 0.116 0.884 21 C 0.324 3.676 22 O -0.423 6.423 23 O -0.317 6.317 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.290 0.710 37 H 0.078 0.922 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.987 11.235 8.262 19.752 hybrid contribution 1.693 -0.442 0.153 1.756 sum -12.294 10.794 8.416 18.398 Atomic orbital electron populations 1.21758 0.93207 1.01931 1.02874 1.21178 0.97019 0.99454 0.92640 0.89226 1.21639 0.92721 1.00866 0.99151 1.22252 0.97446 0.95693 0.91727 1.61218 1.10793 1.50849 1.01865 1.21857 0.89509 0.98309 0.98596 1.20511 0.82487 0.85894 0.87700 1.90446 1.49996 1.58425 1.50655 1.41912 1.06553 1.42912 1.29848 1.19644 0.93109 1.24167 1.09367 0.90215 1.26077 0.94739 0.99544 1.00955 1.69677 1.01828 1.45293 1.39568 0.84957 0.77389 0.78017 0.77753 1.19403 1.19349 1.19885 1.21397 0.99176 0.96066 0.84940 0.88440 1.23523 0.73652 0.85213 0.85179 1.90778 1.45879 1.19905 1.85714 1.84459 1.78976 1.48482 1.19832 1.21664 0.88876 1.02114 1.00598 0.91000 0.91637 0.93369 0.93027 0.89758 0.91602 0.93569 0.91225 0.88579 0.77289 0.91274 0.70982 0.92178 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.21 71.98 0.66 -1.33 16 2 C -0.08 -1.51 2.79 -10.71 -0.03 -1.54 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.64 5.38 30.65 0.16 -2.47 16 5 C 0.06 1.77 5.11 86.32 0.44 2.22 16 6 N -0.52 -18.11 4.00 -880.04 -3.52 -21.63 16 7 C 0.05 1.90 5.04 85.56 0.43 2.33 16 8 C 0.45 22.99 7.46 87.66 0.65 23.64 16 9 O -0.61 -35.31 13.90 -3.07 -0.04 -35.36 16 10 N -0.57 -31.50 5.29 -306.98 -1.62 -33.12 16 11 C -0.33 -19.74 9.68 84.04 0.81 -18.93 16 12 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -51.55 13.05 21.66 0.28 -51.27 16 15 Si 1.00 44.22 29.55 68.60 2.03 46.24 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 C 0.09 2.37 2.35 44.19 0.10 2.47 16 20 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 21 C 0.48 13.04 6.64 71.24 0.47 13.51 16 22 O -0.53 -19.72 15.39 21.97 0.34 -19.38 16 23 O -0.50 -9.09 13.42 -51.35 -0.69 -9.78 16 24 C -0.09 -1.91 4.64 30.64 0.14 -1.76 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.72 5.78 -2.38 -0.01 2.70 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 33 H 0.10 3.85 5.42 -2.39 -0.01 3.83 16 34 H 0.39 20.68 7.90 -92.71 -0.73 19.94 16 35 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.43 4.35 9.10 -74.06 -0.67 3.67 16 37 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.82 312.90 0.78 -75.04 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.32 Total: 31.40 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 4.32 Total: 17.85 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.86 Total: -106.02 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -0.39 Total: -64.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -75.82 0.78 -75.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129496889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.651 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds