Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.52212 * 2 1 4 4 C 1.53112 * 109.52404 * 120.12841 * 2 1 3 5 5 C 1.53040 * 109.27826 * 62.31658 * 4 2 1 6 6 N 1.46840 * 109.52568 * 59.17731 * 5 4 2 7 7 C 1.46895 * 111.00229 * 174.16075 * 6 5 4 8 8 C 1.50706 * 109.47182 * 66.04782 * 7 6 5 9 9 O 1.21297 * 119.99667 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00318 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00234 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00049 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00305 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00224 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 119.99902 * 15 13 11 18 18 H 1.48498 * 109.47295 * 240.00508 * 15 13 11 19 19 C 1.46844 * 111.19922 * 298.26106 * 6 5 4 20 20 H 1.09002 * 109.46529 * 301.72614 * 19 6 5 21 21 C 1.50700 * 109.46485 * 181.75554 * 19 6 5 22 22 O 1.20830 * 119.99877 * 339.99975 * 21 19 6 23 23 O 1.34229 * 120.00378 * 160.00150 * 21 19 6 24 24 C 1.53040 * 109.52543 * 61.73895 * 19 6 5 25 25 H 1.08997 * 109.47493 * 299.87332 * 1 2 3 26 26 H 1.09005 * 109.46970 * 59.87133 * 1 2 3 27 27 H 1.09003 * 109.47114 * 179.86960 * 1 2 3 28 28 H 1.09003 * 109.50464 * 302.37805 * 4 2 1 29 29 H 1.08996 * 109.50876 * 182.25577 * 4 2 1 30 30 H 1.09002 * 109.45969 * 299.16414 * 5 4 2 31 31 H 1.08997 * 109.45280 * 179.19290 * 5 4 2 32 32 H 1.09001 * 109.47613 * 306.05128 * 7 6 5 33 33 H 1.09006 * 109.47521 * 186.04746 * 7 6 5 34 34 H 0.97005 * 119.99976 * 359.97438 * 10 8 7 35 35 H 0.97000 * 120.00002 * 359.97438 * 14 13 11 36 36 H 0.96697 * 116.99782 * 180.02562 * 23 21 19 37 37 H 1.08996 * 109.50657 * 180.87565 * 24 19 6 38 38 H 1.09001 * 109.53164 * 60.78161 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2481 5 6 1.5780 -2.1824 1.2119 6 7 2.0950 -2.8318 0.0007 7 6 1.7863 -4.2680 0.0007 8 6 0.2949 -4.4612 -0.0977 9 8 -0.4386 -3.4972 -0.1620 10 7 -0.2239 -5.7049 -0.1142 11 6 -1.5805 -5.8807 -0.2043 12 1 -2.2336 -5.0224 -0.2616 13 6 -2.1153 -7.1630 -0.2218 14 7 -1.3208 -8.2073 -0.1516 15 14 -3.9639 -7.4025 -0.3438 16 1 -4.6314 -6.0775 -0.4091 17 1 -4.2829 -8.1778 -1.5696 18 1 -4.4471 -8.1423 0.8496 19 6 1.5792 -2.1827 -1.2113 20 1 0.4898 -2.2172 -1.2062 21 6 2.0986 -2.9051 -2.4277 22 8 3.0785 -3.6067 -2.3411 23 8 1.4727 -2.7691 -3.6073 24 6 2.0430 -0.7247 -1.2475 25 1 -0.3634 0.5118 0.8911 26 1 -0.3633 0.5159 -0.8889 27 1 -0.3633 -1.0277 -0.0023 28 1 1.6447 -0.2383 2.1394 29 1 3.1309 -0.6894 1.2684 30 1 0.4886 -2.2169 1.2056 31 1 1.9529 -2.7044 2.0922 32 1 2.1507 -4.7180 0.9242 33 1 2.2713 -4.7440 -0.8516 34 1 0.3627 -6.4758 -0.0631 35 1 -0.3609 -8.0831 -0.0879 36 1 1.8427 -3.2522 -4.3588 37 1 1.6471 -0.2389 -2.1393 38 1 3.1322 -0.6891 -1.2669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129497116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -123.562944 kcal Electronic energy + Delta-G solvation = -22331.472519 eV Core-core repulsion = 18980.840264 eV Total energy + Delta-G solvation = -3350.632255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75459 -38.99668 -37.73714 -35.90066 -34.65819 -33.59098 -31.27510 -31.11424 -28.47170 -26.22003 -24.79357 -24.06448 -22.68998 -21.03038 -19.77365 -18.54782 -17.94763 -17.86034 -16.89140 -16.04352 -15.68200 -15.26617 -14.85562 -14.48241 -14.22744 -13.99574 -13.75365 -13.73305 -13.48139 -13.07166 -12.49813 -12.04796 -11.75916 -11.50425 -11.44410 -11.25012 -11.18351 -11.08546 -10.85329 -10.59757 -10.50388 -10.28428 -10.15548 -9.98457 -9.83805 -9.55750 -9.25936 -8.11909 -7.51444 -6.84094 -3.97511 2.43608 3.16580 3.24056 3.29453 3.48143 3.71791 4.17208 4.21585 4.74292 4.89653 4.91776 5.02671 5.16856 5.33871 5.51359 5.57943 5.61884 5.72222 5.75182 5.84493 5.89942 5.90493 6.03617 6.08661 6.14275 6.22400 6.25776 6.35059 6.47176 6.70214 6.75728 7.12949 7.27031 7.70567 7.99886 8.17315 8.48689 8.68905 9.37690 9.74535 10.58744 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.005958 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.870238 B = 4698.367521 C = 5081.692629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.111 4.111 5 C 0.042 3.958 6 N -0.493 5.493 7 C 0.025 3.975 8 C 0.404 3.596 9 O -0.590 6.590 10 N -0.564 5.564 11 C -0.385 4.385 12 H 0.101 0.899 13 C -0.008 4.008 14 N -0.896 5.896 15 Si 1.096 2.904 16 H -0.283 1.283 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.071 3.929 20 H 0.130 0.870 21 C 0.484 3.516 22 O -0.508 6.508 23 O -0.515 6.515 24 C -0.098 4.098 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.377 0.623 35 H 0.263 0.737 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 12.360 -1.119 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.085 4.085 6 N -0.218 5.218 7 C -0.106 4.106 8 C 0.191 3.809 9 O -0.478 6.478 10 N -0.199 5.199 11 C -0.514 4.514 12 H 0.119 0.881 13 C -0.211 4.211 14 N -0.534 5.534 15 Si 0.922 3.078 16 H -0.209 1.209 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.038 4.038 20 H 0.147 0.853 21 C 0.326 3.674 22 O -0.396 6.396 23 O -0.326 6.326 24 C -0.136 4.136 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.210 0.790 35 H 0.075 0.925 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.226 11.912 -0.867 13.037 hybrid contribution 1.099 0.070 -0.426 1.181 sum 6.324 11.982 -1.293 13.611 Atomic orbital electron populations 1.22069 0.94717 1.04171 1.01035 1.21085 0.96392 0.98578 0.94431 0.91117 1.21628 1.00956 0.94953 0.97299 1.22317 1.01077 0.93978 0.91171 1.62197 1.57333 1.01276 1.00972 1.22339 0.93350 0.90194 1.04748 1.21054 0.90539 0.84026 0.85328 1.90338 1.61481 1.38952 1.57033 1.42132 1.08303 1.06231 1.63274 1.20641 0.82366 0.96641 1.51782 0.88102 1.26563 1.08634 0.90626 0.95262 1.70837 1.05161 1.31303 1.46146 0.83058 0.71702 0.75778 0.77293 1.20883 1.20924 1.20907 1.21657 1.03522 0.93168 0.85470 0.85264 1.23581 0.80532 0.78975 0.84285 1.90639 1.26056 1.37686 1.85174 1.84566 1.58613 1.69298 1.20104 1.21555 1.01273 0.91976 0.98801 0.93004 0.93042 0.89943 0.91528 0.91530 0.90642 0.91133 0.88987 0.87961 0.79023 0.92538 0.73718 0.90895 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.62 37.16 0.32 -1.87 16 2 C -0.09 -1.07 3.21 -90.50 -0.29 -1.36 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.40 5.60 -26.65 -0.15 -1.55 16 5 C 0.04 0.66 4.85 -3.84 -0.02 0.64 16 6 N -0.49 -8.53 4.46 -229.52 -1.02 -9.55 16 7 C 0.03 0.48 5.33 -4.98 -0.03 0.45 16 8 C 0.40 9.26 7.19 -10.99 -0.08 9.18 16 9 O -0.59 -14.50 10.48 5.54 0.06 -14.45 16 10 N -0.56 -14.04 5.28 -10.96 -0.06 -14.10 16 11 C -0.38 -10.61 9.68 -14.93 -0.14 -10.75 16 12 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 13 C -0.01 -0.20 5.50 -17.47 -0.10 -0.30 16 14 N -0.90 -24.98 13.68 55.50 0.76 -24.22 16 15 Si 1.10 24.07 29.92 -169.99 -5.09 18.98 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.07 1.21 1.62 -68.87 -0.11 1.10 16 20 H 0.13 2.56 3.85 -51.93 -0.20 2.36 16 21 C 0.48 8.43 6.78 36.01 0.24 8.67 16 22 O -0.51 -9.70 15.27 -18.75 -0.29 -9.98 16 23 O -0.52 -7.65 13.42 -39.26 -0.53 -8.18 16 24 C -0.10 -1.34 4.86 -26.65 -0.13 -1.47 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.40 4.21 -51.93 -0.22 1.18 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.40 4.45 -51.93 -0.23 1.16 16 31 H 0.07 1.05 8.06 -51.93 -0.42 0.64 16 32 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 33 H 0.10 2.01 5.68 -51.93 -0.30 1.71 16 34 H 0.38 8.89 6.73 -40.82 -0.27 8.61 16 35 H 0.26 7.10 6.78 -40.82 -0.28 6.83 16 36 H 0.40 4.09 9.10 45.56 0.41 4.51 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -31.85 298.16 -6.20 -38.05 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.05 Total: 16.21 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.48 Total: 2.75 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.32 Total: -47.88 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.76 Total: -32.61 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.09 Total: 18.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.85 -6.20 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129497116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.509 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds