Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.52212 * 2 1 4 4 C 1.53112 * 109.52404 * 120.12841 * 2 1 3 5 5 C 1.53040 * 109.27826 * 62.31658 * 4 2 1 6 6 N 1.46840 * 109.52568 * 59.17731 * 5 4 2 7 7 C 1.46895 * 111.00229 * 174.16075 * 6 5 4 8 8 C 1.50706 * 109.47182 * 66.04782 * 7 6 5 9 9 O 1.21297 * 119.99667 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00318 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00234 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00049 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00305 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00224 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 119.99902 * 15 13 11 18 18 H 1.48498 * 109.47295 * 240.00508 * 15 13 11 19 19 C 1.46844 * 111.19922 * 298.26106 * 6 5 4 20 20 H 1.09002 * 109.46529 * 301.72614 * 19 6 5 21 21 C 1.50700 * 109.46485 * 181.75554 * 19 6 5 22 22 O 1.20830 * 119.99877 * 339.99975 * 21 19 6 23 23 O 1.34229 * 120.00378 * 160.00150 * 21 19 6 24 24 C 1.53040 * 109.52543 * 61.73895 * 19 6 5 25 25 H 1.08997 * 109.47493 * 299.87332 * 1 2 3 26 26 H 1.09005 * 109.46970 * 59.87133 * 1 2 3 27 27 H 1.09003 * 109.47114 * 179.86960 * 1 2 3 28 28 H 1.09003 * 109.50464 * 302.37805 * 4 2 1 29 29 H 1.08996 * 109.50876 * 182.25577 * 4 2 1 30 30 H 1.09002 * 109.45969 * 299.16414 * 5 4 2 31 31 H 1.08997 * 109.45280 * 179.19290 * 5 4 2 32 32 H 1.09001 * 109.47613 * 306.05128 * 7 6 5 33 33 H 1.09006 * 109.47521 * 186.04746 * 7 6 5 34 34 H 0.97005 * 119.99976 * 359.97438 * 10 8 7 35 35 H 0.97000 * 120.00002 * 359.97438 * 14 13 11 36 36 H 0.96697 * 116.99782 * 180.02562 * 23 21 19 37 37 H 1.08996 * 109.50657 * 180.87565 * 24 19 6 38 38 H 1.09001 * 109.53164 * 60.78161 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2481 5 6 1.5780 -2.1824 1.2119 6 7 2.0950 -2.8318 0.0007 7 6 1.7863 -4.2680 0.0007 8 6 0.2949 -4.4612 -0.0977 9 8 -0.4386 -3.4972 -0.1620 10 7 -0.2239 -5.7049 -0.1142 11 6 -1.5805 -5.8807 -0.2043 12 1 -2.2336 -5.0224 -0.2616 13 6 -2.1153 -7.1630 -0.2218 14 7 -1.3208 -8.2073 -0.1516 15 14 -3.9639 -7.4025 -0.3438 16 1 -4.6314 -6.0775 -0.4091 17 1 -4.2829 -8.1778 -1.5696 18 1 -4.4471 -8.1423 0.8496 19 6 1.5792 -2.1827 -1.2113 20 1 0.4898 -2.2172 -1.2062 21 6 2.0986 -2.9051 -2.4277 22 8 3.0785 -3.6067 -2.3411 23 8 1.4727 -2.7691 -3.6073 24 6 2.0430 -0.7247 -1.2475 25 1 -0.3634 0.5118 0.8911 26 1 -0.3633 0.5159 -0.8889 27 1 -0.3633 -1.0277 -0.0023 28 1 1.6447 -0.2383 2.1394 29 1 3.1309 -0.6894 1.2684 30 1 0.4886 -2.2169 1.2056 31 1 1.9529 -2.7044 2.0922 32 1 2.1507 -4.7180 0.9242 33 1 2.2713 -4.7440 -0.8516 34 1 0.3627 -6.4758 -0.0631 35 1 -0.3609 -8.0831 -0.0879 36 1 1.8427 -3.2522 -4.3588 37 1 1.6471 -0.2389 -2.1393 38 1 3.1322 -0.6891 -1.2669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129497116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = -147.762625 kcal Electronic energy + Delta-G solvation = -22332.521896 eV Core-core repulsion = 18980.840264 eV Total energy + Delta-G solvation = -3351.681632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14864 -40.52733 -39.25449 -37.21421 -36.51222 -35.05181 -33.22378 -32.36839 -29.84803 -27.63837 -26.29190 -25.65314 -23.98393 -22.39412 -21.52418 -20.09039 -19.64807 -19.16594 -18.39525 -17.62938 -17.10895 -16.86356 -16.30066 -15.94888 -15.80293 -15.52361 -15.24592 -15.14897 -14.79937 -14.28968 -13.82447 -13.52903 -13.35704 -13.12405 -12.83693 -12.70974 -12.59896 -12.42991 -12.05358 -12.00282 -11.97365 -11.91122 -11.60232 -11.44361 -11.21999 -11.17084 -10.92394 -10.13707 -9.10244 -8.96645 -6.11589 1.06450 1.47181 1.50966 1.78055 1.91273 1.93793 2.37742 2.84478 2.97329 3.12188 3.75453 3.82645 3.93551 4.07688 4.12594 4.29210 4.34923 4.44775 4.49428 4.55546 4.64032 4.78818 4.81102 4.93507 5.02410 5.09486 5.18880 5.24752 5.34458 5.48724 5.55474 5.61009 5.77650 5.90019 5.93805 6.48383 6.67693 6.93294 7.36930 7.81477 8.49053 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.005958 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.870238 B = 4698.367521 C = 5081.692629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 H 0.104 0.896 4 C -0.104 4.104 5 C 0.038 3.962 6 N -0.487 5.487 7 C 0.034 3.966 8 C 0.410 3.590 9 O -0.604 6.604 10 N -0.581 5.581 11 C -0.407 4.407 12 H 0.078 0.922 13 C -0.043 4.043 14 N -0.916 5.916 15 Si 1.138 2.862 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.271 1.271 19 C 0.067 3.933 20 H 0.101 0.899 21 C 0.482 3.518 22 O -0.529 6.529 23 O -0.514 6.514 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.381 0.619 35 H 0.259 0.741 36 H 0.425 0.575 37 H 0.085 0.915 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 13.898 -0.996 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.101 4.101 3 H 0.122 0.878 4 C -0.142 4.142 5 C -0.089 4.089 6 N -0.211 5.211 7 C -0.098 4.098 8 C 0.198 3.802 9 O -0.491 6.491 10 N -0.218 5.218 11 C -0.536 4.536 12 H 0.096 0.904 13 C -0.241 4.241 14 N -0.555 5.555 15 Si 0.958 3.042 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.042 4.042 20 H 0.118 0.882 21 C 0.325 3.675 22 O -0.419 6.419 23 O -0.327 6.327 24 C -0.132 4.132 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.215 0.785 35 H 0.070 0.930 36 H 0.286 0.714 37 H 0.103 0.897 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.910 13.473 -0.760 14.732 hybrid contribution 0.938 -0.296 -0.506 1.106 sum 6.849 13.177 -1.267 14.904 Atomic orbital electron populations 1.22006 0.95811 1.01797 1.02021 1.21131 0.95330 1.00086 0.93533 0.87807 1.21632 1.01721 0.92488 0.98352 1.22407 0.99295 0.96457 0.90721 1.62319 1.56766 1.00215 1.01805 1.22332 0.89916 0.91975 1.05531 1.21939 0.92308 0.83113 0.82874 1.90366 1.62695 1.39409 1.56651 1.42205 1.07647 1.07099 1.64897 1.20597 0.83519 0.96278 1.53228 0.90445 1.27865 1.12017 0.90062 0.94166 1.70913 1.05208 1.31694 1.47672 0.82559 0.67418 0.76207 0.78044 1.20249 1.19806 1.19672 1.21709 1.01777 0.95433 0.85311 0.88154 1.23705 0.80258 0.78539 0.84982 1.90627 1.27042 1.38537 1.85674 1.84521 1.58360 1.69463 1.20326 1.21613 1.01780 0.89587 1.00197 0.91805 0.92320 0.93901 0.89624 0.90238 0.93645 0.90421 0.87009 0.88299 0.78512 0.93039 0.71366 0.89661 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 8.62 71.98 0.62 -3.43 16 2 C -0.08 -1.80 3.21 -10.72 -0.03 -1.84 16 3 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.10 -2.35 5.60 30.65 0.17 -2.17 16 5 C 0.04 1.17 4.85 86.33 0.42 1.59 16 6 N -0.49 -16.40 4.46 -880.05 -3.92 -20.32 16 7 C 0.03 1.30 5.33 85.56 0.46 1.75 16 8 C 0.41 19.18 7.19 87.66 0.63 19.81 16 9 O -0.60 -30.53 10.48 -3.08 -0.03 -30.56 16 10 N -0.58 -29.69 5.28 -306.99 -1.62 -31.31 16 11 C -0.41 -23.01 9.68 84.04 0.81 -22.20 16 12 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 13 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 14 N -0.92 -51.53 13.68 21.66 0.30 -51.24 16 15 Si 1.14 48.47 29.92 68.60 2.05 50.53 16 16 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 C 0.07 2.23 1.62 44.19 0.07 2.31 16 20 H 0.10 4.04 3.85 -2.39 -0.01 4.03 16 21 C 0.48 16.43 6.78 71.24 0.48 16.91 16 22 O -0.53 -19.80 15.27 21.95 0.34 -19.46 16 23 O -0.51 -14.80 13.42 -51.41 -0.69 -15.49 16 24 C -0.09 -2.35 4.86 30.65 0.15 -2.20 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.46 4.21 -2.39 -0.01 1.45 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.69 4.45 -2.39 -0.01 1.68 16 31 H 0.08 2.22 8.06 -2.39 -0.02 2.20 16 32 H 0.11 3.76 8.06 -2.39 -0.02 3.74 16 33 H 0.10 3.87 5.68 -2.38 -0.01 3.86 16 34 H 0.38 18.49 6.73 -92.70 -0.62 17.87 16 35 H 0.26 14.23 6.78 -92.71 -0.63 13.61 16 36 H 0.42 8.09 9.10 -74.06 -0.67 7.41 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.33 298.16 0.62 -68.71 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -0.04 Total: 40.49 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.25 Total: 8.67 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -5.25 Total: -102.87 kcal Atomic # 8 Polarization: -65.13 SS G_CDS: -0.39 Total: -65.52 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.05 Total: 50.53 kcal Total: -69.33 0.62 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129497116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.054 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds