Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46902 * 2 1 4 4 C 1.52998 * 109.47478 * 240.00384 * 2 1 3 5 5 O 1.45201 * 109.47303 * 120.00006 * 2 1 3 6 6 C 1.34629 * 116.99824 * 58.98426 * 5 2 1 7 7 O 1.21513 * 120.00089 * 2.72919 * 6 5 2 8 8 N 1.34775 * 120.00002 * 182.73161 * 6 5 2 9 9 C 1.46921 * 125.05871 * 176.63929 * 8 6 5 10 10 C 1.54189 * 106.06349 * 178.35247 * 9 8 6 11 11 C 1.54477 * 103.18208 * 344.11783 * 10 9 8 12 12 N 1.40081 * 125.05584 * 356.63561 * 8 6 5 13 13 C 1.34772 * 125.74412 * 19.80479 * 12 8 6 14 14 O 1.21691 * 119.99486 * 6.44387 * 13 12 8 15 15 C 1.46374 * 120.00395 * 186.44698 * 13 12 8 16 16 H 1.08002 * 119.99293 * 5.39360 * 15 13 12 17 17 C 1.40048 * 120.00235 * 185.38676 * 15 13 12 18 18 N 1.30669 * 119.99630 * 5.33773 * 17 15 13 19 19 Si 1.86793 * 119.99924 * 185.33352 * 17 15 13 20 20 H 1.48497 * 109.47470 * 5.00347 * 19 17 15 21 21 H 1.48498 * 109.46973 * 125.00938 * 19 17 15 22 22 H 1.48507 * 109.47149 * 245.00645 * 19 17 15 23 23 H 1.09002 * 109.47173 * 299.99541 * 1 2 3 24 24 H 1.08998 * 109.46977 * 60.00238 * 1 2 3 25 25 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47178 * 175.04614 * 3 2 1 27 27 H 1.08994 * 109.47177 * 295.05034 * 3 2 1 28 28 H 1.09003 * 109.46764 * 55.05030 * 3 2 1 29 29 H 1.09006 * 109.47051 * 300.00028 * 4 2 1 30 30 H 1.09001 * 109.46800 * 59.99604 * 4 2 1 31 31 H 1.08994 * 109.47421 * 179.97438 * 4 2 1 32 32 H 1.09000 * 110.13893 * 59.20116 * 9 8 6 33 33 H 1.09000 * 110.19163 * 297.53079 * 9 8 6 34 34 H 1.09000 * 110.70846 * 102.59319 * 10 9 8 35 35 H 1.09005 * 110.70238 * 225.64958 * 10 9 8 36 36 H 1.09006 * 110.52646 * 145.50420 * 11 10 9 37 37 H 1.08999 * 110.52825 * 268.24767 * 11 10 9 38 38 H 0.97001 * 119.99731 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6350 -1.9659 1.3490 7 8 0.9605 -2.5131 0.4992 8 7 2.0038 -2.6419 2.4551 9 6 1.5961 -4.0156 2.7798 10 6 2.2954 -4.3652 4.1088 11 6 3.3854 -3.2774 4.2302 12 7 2.8329 -2.1393 3.4662 13 6 3.0850 -0.8367 3.7027 14 8 2.4836 0.0215 3.0840 15 6 4.0821 -0.4541 4.7037 16 1 4.6775 -1.2127 5.1900 17 6 4.2642 0.8955 5.0306 18 7 3.4746 1.8034 4.5208 19 14 5.6355 1.3975 6.1953 20 1 6.4566 0.2079 6.5353 21 1 6.4915 2.4193 5.5407 22 1 5.0484 1.9647 7.4359 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 1.4439 0.0887 27 1 1.7508 1.9301 -0.9309 28 1 1.6060 1.9813 0.8424 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.9198 -4.6987 1.9945 33 1 0.5141 -4.0684 2.9000 34 1 1.5944 -4.3030 4.9412 35 1 2.7447 -5.3571 4.0586 36 1 3.5370 -3.0030 5.2742 37 1 4.3193 -3.6207 3.7850 38 1 3.6005 2.7381 4.7475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136523456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = -65.870879 kcal Electronic energy + Delta-G solvation = -22615.051439 eV Core-core repulsion = 19266.920900 eV Total energy + Delta-G solvation = -3348.130539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03789 -38.45860 -36.32000 -35.47795 -33.28163 -32.55625 -31.16280 -30.70848 -26.86058 -26.73510 -26.34532 -24.59114 -22.57263 -21.20733 -20.21637 -18.32768 -17.51184 -16.26228 -15.94674 -15.90443 -15.13896 -14.88602 -14.44509 -13.95300 -13.77359 -13.60464 -13.03281 -12.85258 -12.68819 -12.33219 -12.09436 -11.75486 -11.65265 -11.46408 -11.30318 -11.18471 -11.13894 -11.09762 -10.86972 -10.72145 -10.61194 -10.42515 -10.21626 -9.52999 -9.36764 -9.27206 -8.86373 -7.59107 -6.82057 -6.31406 -4.73459 2.56671 3.07605 3.16522 3.20400 3.58322 3.87505 4.16526 4.49594 4.87029 5.01870 5.13884 5.36009 5.40044 5.41748 5.56014 5.65160 5.78595 5.94117 5.97941 6.01304 6.03212 6.20467 6.23240 6.31483 6.35971 6.40830 6.42307 6.59040 6.80970 6.89675 7.05375 7.31231 7.33901 7.58128 8.06397 8.60041 8.91591 9.19082 9.34684 10.49461 10.67655 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008459 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.962387 B = 3309.182094 C = 4676.313548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 C -0.128 4.128 4 C -0.179 4.179 5 O -0.280 6.280 6 C 0.661 3.339 7 O -0.598 6.598 8 N -0.415 5.415 9 C 0.138 3.862 10 C -0.144 4.144 11 C 0.124 3.876 12 N -0.457 5.457 13 C 0.559 3.441 14 O -0.518 6.518 15 C -0.528 4.528 16 H 0.073 0.927 17 C 0.089 3.911 18 N -0.764 5.764 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -6.946 -2.604 7.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.087 3.913 3 C -0.185 4.185 4 C -0.236 4.236 5 O -0.191 6.191 6 C 0.418 3.582 7 O -0.490 6.490 8 N -0.241 5.241 9 C 0.017 3.983 10 C -0.183 4.183 11 C 0.000 4.000 12 N -0.292 5.292 13 C 0.365 3.635 14 O -0.394 6.394 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.392 5.392 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.431 -6.165 -3.376 7.172 hybrid contribution 0.615 0.126 0.550 0.835 sum -0.816 -6.038 -2.826 6.716 Atomic orbital electron populations 1.22425 0.95138 1.04003 1.01677 1.21942 0.93736 0.92318 0.83281 1.21652 1.02369 0.92867 1.01582 1.22500 1.01194 1.03084 0.96819 1.87313 1.68217 1.21184 1.42410 1.17626 0.78784 0.81875 0.79962 1.90815 1.45216 1.70885 1.42077 1.46345 1.48717 1.13128 1.15948 1.21819 0.99348 0.80190 0.96975 1.22861 0.98887 0.99684 0.96831 1.22068 0.94700 0.85668 0.97559 1.49558 1.46351 1.06161 1.27112 1.18628 0.83901 0.76622 0.84354 1.90717 1.52523 1.45487 1.50664 1.20698 1.19890 0.92719 1.23358 0.90916 1.25666 0.95909 0.96088 0.95477 1.69995 1.32486 1.01539 1.35194 0.86246 0.81025 0.79190 0.79936 1.18664 1.20139 1.20102 0.92218 0.92308 0.90191 0.91854 0.91911 0.91019 0.89874 0.92189 0.92733 0.90858 0.91139 0.90077 0.89414 0.88791 0.92482 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.36 37.16 0.31 -2.99 16 2 C 0.13 2.56 1.13 -90.62 -0.10 2.45 16 3 C -0.13 -2.43 8.85 37.16 0.33 -2.10 16 4 C -0.18 -3.20 8.39 37.16 0.31 -2.88 16 5 O -0.28 -7.00 5.62 -48.73 -0.27 -7.27 16 6 C 0.66 15.74 7.81 54.05 0.42 16.16 16 7 O -0.60 -13.78 12.19 -19.28 -0.23 -14.01 16 8 N -0.41 -9.17 3.83 -64.35 -0.25 -9.42 16 9 C 0.14 2.25 6.99 -3.19 -0.02 2.23 16 10 C -0.14 -1.90 7.11 -25.33 -0.18 -2.08 16 11 C 0.12 2.13 6.72 -2.56 -0.02 2.11 16 12 N -0.46 -10.64 3.82 -60.03 -0.23 -10.87 16 13 C 0.56 15.55 7.60 -12.99 -0.10 15.45 16 14 O -0.52 -15.88 11.60 -20.17 -0.23 -16.11 16 15 C -0.53 -14.12 8.91 -35.63 -0.32 -14.44 16 16 H 0.07 1.76 6.83 -52.49 -0.36 1.40 16 17 C 0.09 2.35 5.49 -17.37 -0.10 2.25 16 18 N -0.76 -21.68 11.88 55.55 0.66 -21.02 16 19 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.61 5.90 -51.93 -0.31 1.30 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.60 5.86 -51.93 -0.30 1.30 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.55 7.27 -51.93 -0.38 1.18 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -34.01 309.05 -5.94 -39.95 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.55 Total: 3.72 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 0.54 Total: 16.18 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.18 Total: -41.31 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.74 Total: -37.40 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.01 -5.94 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136523456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.920 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds