Wall clock time and date at job start Mon Mar 30 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46902 * 2 1 4 4 C 1.52998 * 109.47478 * 240.00384 * 2 1 3 5 5 O 1.45201 * 109.47303 * 120.00006 * 2 1 3 6 6 C 1.34629 * 116.99824 * 58.98426 * 5 2 1 7 7 O 1.21513 * 120.00089 * 2.72919 * 6 5 2 8 8 N 1.34775 * 120.00002 * 182.73161 * 6 5 2 9 9 C 1.46921 * 125.05871 * 176.63929 * 8 6 5 10 10 C 1.54189 * 106.06349 * 178.35247 * 9 8 6 11 11 C 1.54477 * 103.18208 * 344.11783 * 10 9 8 12 12 N 1.40081 * 125.05584 * 356.63561 * 8 6 5 13 13 C 1.34772 * 125.74412 * 19.80479 * 12 8 6 14 14 O 1.21691 * 119.99486 * 6.44387 * 13 12 8 15 15 C 1.46374 * 120.00395 * 186.44698 * 13 12 8 16 16 H 1.08002 * 119.99293 * 5.39360 * 15 13 12 17 17 C 1.40048 * 120.00235 * 185.38676 * 15 13 12 18 18 N 1.30669 * 119.99630 * 5.33773 * 17 15 13 19 19 Si 1.86793 * 119.99924 * 185.33352 * 17 15 13 20 20 H 1.48497 * 109.47470 * 5.00347 * 19 17 15 21 21 H 1.48498 * 109.46973 * 125.00938 * 19 17 15 22 22 H 1.48507 * 109.47149 * 245.00645 * 19 17 15 23 23 H 1.09002 * 109.47173 * 299.99541 * 1 2 3 24 24 H 1.08998 * 109.46977 * 60.00238 * 1 2 3 25 25 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47178 * 175.04614 * 3 2 1 27 27 H 1.08994 * 109.47177 * 295.05034 * 3 2 1 28 28 H 1.09003 * 109.46764 * 55.05030 * 3 2 1 29 29 H 1.09006 * 109.47051 * 300.00028 * 4 2 1 30 30 H 1.09001 * 109.46800 * 59.99604 * 4 2 1 31 31 H 1.08994 * 109.47421 * 179.97438 * 4 2 1 32 32 H 1.09000 * 110.13893 * 59.20116 * 9 8 6 33 33 H 1.09000 * 110.19163 * 297.53079 * 9 8 6 34 34 H 1.09000 * 110.70846 * 102.59319 * 10 9 8 35 35 H 1.09005 * 110.70238 * 225.64958 * 10 9 8 36 36 H 1.09006 * 110.52646 * 145.50420 * 11 10 9 37 37 H 1.08999 * 110.52825 * 268.24767 * 11 10 9 38 38 H 0.97001 * 119.99731 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6350 -1.9659 1.3490 7 8 0.9605 -2.5131 0.4992 8 7 2.0038 -2.6419 2.4551 9 6 1.5961 -4.0156 2.7798 10 6 2.2954 -4.3652 4.1088 11 6 3.3854 -3.2774 4.2302 12 7 2.8329 -2.1393 3.4662 13 6 3.0850 -0.8367 3.7027 14 8 2.4836 0.0215 3.0840 15 6 4.0821 -0.4541 4.7037 16 1 4.6775 -1.2127 5.1900 17 6 4.2642 0.8955 5.0306 18 7 3.4746 1.8034 4.5208 19 14 5.6355 1.3975 6.1953 20 1 6.4566 0.2079 6.5353 21 1 6.4915 2.4193 5.5407 22 1 5.0484 1.9647 7.4359 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 1.4439 0.0887 27 1 1.7508 1.9301 -0.9309 28 1 1.6060 1.9813 0.8424 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.9198 -4.6987 1.9945 33 1 0.5141 -4.0684 2.9000 34 1 1.5944 -4.3030 4.9412 35 1 2.7447 -5.3571 4.0586 36 1 3.5370 -3.0030 5.2742 37 1 4.3193 -3.6207 3.7850 38 1 3.6005 2.7381 4.7475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136523456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:47 Heat of formation + Delta-G solvation = -88.946140 kcal Electronic energy + Delta-G solvation = -22616.052058 eV Core-core repulsion = 19266.920900 eV Total energy + Delta-G solvation = -3349.131158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72665 -40.10704 -38.17248 -37.22371 -34.95564 -34.53554 -32.75705 -32.28460 -28.35051 -28.32122 -28.25986 -26.12503 -24.23496 -22.74020 -21.79779 -20.07717 -19.31247 -17.91633 -17.79858 -17.56770 -16.89042 -16.49389 -15.98254 -15.60918 -15.46685 -15.19081 -14.64455 -14.51888 -14.30818 -13.77279 -13.56046 -13.20625 -13.17614 -13.14280 -12.90568 -12.79496 -12.71069 -12.63386 -12.50028 -12.34266 -12.12377 -12.08249 -11.90610 -11.19478 -11.05779 -10.93776 -10.71860 -9.64379 -8.59659 -8.28748 -6.79872 0.99276 1.42642 1.44566 1.60990 1.81767 2.18541 2.40467 2.55133 3.56937 3.63894 3.68988 3.82353 3.86738 4.02008 4.03728 4.15914 4.52658 4.56290 4.59878 4.67875 4.74914 4.75930 4.83511 4.85914 4.86315 5.04802 5.06499 5.23364 5.27928 5.33056 5.35744 5.42564 5.62216 5.87990 6.10121 6.74042 6.91345 7.44742 7.46208 8.53117 8.70460 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008459 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.962387 B = 3309.182094 C = 4676.313548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 C -0.118 4.118 4 C -0.166 4.166 5 O -0.315 6.315 6 C 0.646 3.354 7 O -0.601 6.601 8 N -0.423 5.423 9 C 0.124 3.876 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.469 5.469 13 C 0.538 3.462 14 O -0.562 6.562 15 C -0.549 4.549 16 H 0.093 0.907 17 C 0.034 3.966 18 N -0.816 5.816 19 Si 0.996 3.004 20 H -0.244 1.244 21 H -0.275 1.275 22 H -0.268 1.268 23 H 0.037 0.963 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -8.457 -2.212 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.068 3.932 3 C -0.175 4.175 4 C -0.223 4.223 5 O -0.227 6.227 6 C 0.402 3.598 7 O -0.494 6.494 8 N -0.250 5.250 9 C 0.005 3.995 10 C -0.160 4.160 11 C -0.009 4.009 12 N -0.302 5.302 13 C 0.344 3.656 14 O -0.442 6.442 15 C -0.587 4.587 16 H 0.111 0.889 17 C -0.181 4.181 18 N -0.445 5.445 19 Si 0.816 3.184 20 H -0.167 1.167 21 H -0.201 1.201 22 H -0.193 1.193 23 H 0.056 0.944 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.486 -7.765 -2.965 8.326 hybrid contribution 0.264 0.535 0.373 0.704 sum -0.222 -7.230 -2.593 7.684 Atomic orbital electron populations 1.22317 0.94110 1.03198 1.02450 1.22398 0.94777 0.92793 0.83252 1.21624 1.00794 0.92414 1.02634 1.22375 1.00741 1.02240 0.96910 1.87274 1.68917 1.21987 1.44498 1.17929 0.79258 0.81857 0.80805 1.90783 1.45413 1.70905 1.42288 1.46835 1.48497 1.14555 1.15142 1.22290 1.00169 0.77736 0.99346 1.22899 0.97452 1.00413 0.95266 1.22438 0.96467 0.84949 0.97053 1.49379 1.46392 1.06789 1.27628 1.19008 0.84164 0.77920 0.84550 1.90682 1.53774 1.47704 1.52008 1.21187 1.20185 0.93848 1.23497 0.88853 1.26864 0.98452 0.95778 0.97055 1.70166 1.34924 1.02132 1.37271 0.84981 0.77164 0.79146 0.77119 1.16665 1.20075 1.19270 0.94420 0.88433 0.91652 0.93756 0.87323 0.94010 0.91398 0.88470 0.93289 0.88992 0.90636 0.88899 0.84632 0.88300 0.91059 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.20 8.36 71.98 0.60 -5.60 16 2 C 0.10 4.36 1.13 -10.79 -0.01 4.34 16 3 C -0.12 -4.57 8.85 71.98 0.64 -3.93 16 4 C -0.17 -5.80 8.39 71.98 0.60 -5.20 16 5 O -0.32 -16.41 5.62 -47.32 -0.27 -16.68 16 6 C 0.65 31.53 7.81 129.79 1.01 32.54 16 7 O -0.60 -28.07 12.19 19.80 0.24 -27.83 16 8 N -0.42 -18.81 3.83 -587.92 -2.25 -21.06 16 9 C 0.12 3.82 6.99 86.70 0.61 4.43 16 10 C -0.12 -2.81 7.11 31.50 0.22 -2.58 16 11 C 0.11 3.67 6.72 86.63 0.58 4.25 16 12 N -0.47 -21.98 3.82 -462.07 -1.77 -23.74 16 13 C 0.54 30.88 7.60 86.36 0.66 31.54 16 14 O -0.56 -36.27 11.60 19.93 0.23 -36.04 16 15 C -0.55 -29.71 8.91 24.83 0.22 -29.49 16 16 H 0.09 4.46 6.83 -2.91 -0.02 4.44 16 17 C 0.03 1.83 5.49 85.30 0.47 2.29 16 18 N -0.82 -48.06 11.88 21.84 0.26 -47.80 16 19 Si 1.00 39.35 29.56 68.60 2.03 41.38 16 20 H -0.24 -8.78 7.11 99.48 0.71 -8.07 16 21 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.06 2.65 5.90 -2.39 -0.01 2.64 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.60 5.86 -2.38 -0.01 2.58 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.10 3.09 7.27 -2.38 -0.02 3.07 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.27 14.68 8.29 -92.71 -0.77 13.91 16 Total: -1.00 -79.27 309.05 5.13 -74.14 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.05 Total: 25.04 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 5.60 Total: 32.59 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.76 Total: -92.61 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: 0.21 Total: -80.54 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -79.27 5.13 -74.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136523456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.807 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds