Wall clock time and date at job start Mon Mar 30 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47081 * 2 1 4 4 C 1.53003 * 109.47248 * 240.00291 * 2 1 3 5 5 O 1.45197 * 109.47152 * 119.99957 * 2 1 3 6 6 C 1.34635 * 116.99823 * 60.00105 * 5 2 1 7 7 O 1.21507 * 119.99760 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00075 * 179.97438 * 6 5 2 9 9 C 1.47264 * 121.35697 * 180.02562 * 8 6 5 10 10 C 1.53180 * 108.06500 * 118.31619 * 9 8 6 11 11 N 1.45649 * 110.66563 * 47.06737 * 10 9 8 12 12 C 1.37093 * 117.70389 * 157.94926 * 11 10 9 13 13 H 1.08009 * 119.99841 * 203.15465 * 12 11 10 14 14 C 1.38954 * 120.00417 * 22.88635 * 12 11 10 15 15 N 1.31407 * 119.99702 * 17.60293 * 14 12 11 16 16 Si 1.86796 * 120.00425 * 197.60096 * 14 12 11 17 17 H 1.48500 * 109.46934 * 89.99736 * 16 14 12 18 18 H 1.48492 * 109.47527 * 210.00008 * 16 14 12 19 19 H 1.48501 * 109.47087 * 330.00138 * 16 14 12 20 20 C 1.33379 * 124.58757 * 337.66895 * 11 10 9 21 21 O 1.21287 * 118.48867 * 184.55962 * 20 11 10 22 22 C 1.47052 * 121.34964 * 0.02562 * 8 6 5 23 23 H 1.09000 * 109.46985 * 300.00080 * 1 2 3 24 24 H 1.09001 * 109.46920 * 59.99749 * 1 2 3 25 25 H 1.08992 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46862 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47238 * 300.00422 * 3 2 1 28 28 H 1.08998 * 109.46570 * 59.99868 * 3 2 1 29 29 H 1.08992 * 109.46847 * 299.99986 * 4 2 1 30 30 H 1.08999 * 109.46894 * 59.99686 * 4 2 1 31 31 H 1.08997 * 109.47094 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.72668 * 238.15391 * 9 8 6 33 33 H 1.09003 * 109.71859 * 358.80649 * 9 8 6 34 34 H 1.08994 * 109.40777 * 286.67473 * 10 9 8 35 35 H 1.09007 * 109.13441 * 167.28143 * 10 9 8 36 36 H 0.97006 * 120.00038 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.56569 * 102.93622 * 22 8 6 38 38 H 1.08995 * 109.56970 * 342.58222 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5035 8 7 2.0680 -2.6657 2.4166 9 6 1.6907 -4.0756 2.6132 10 6 2.9732 -4.9131 2.6263 11 7 3.9752 -4.3053 3.4911 12 6 4.9686 -5.1131 3.9812 13 1 5.4936 -4.8364 4.8837 14 6 5.2962 -6.2906 3.3202 15 7 4.9229 -6.4696 2.0730 16 14 6.2672 -7.6191 4.2043 17 1 5.3290 -8.5513 4.8797 18 1 7.0883 -8.3696 3.2207 19 1 7.1560 -6.9925 5.2155 20 6 3.9972 -3.0169 3.8354 21 8 4.9306 -2.6100 4.4943 22 6 2.9169 -2.0452 3.4445 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 1.1649 -4.1869 3.5615 33 1 1.0482 -4.4019 1.7953 34 1 3.3693 -4.9848 1.6134 35 1 2.7427 -5.9137 2.9922 36 1 5.1513 -7.2917 1.6116 37 1 2.3125 -1.8002 4.3179 38 1 3.3693 -1.1375 3.0453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146603359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:57 Heat of formation + Delta-G solvation = -96.325730 kcal Electronic energy + Delta-G solvation = -21996.846511 eV Core-core repulsion = 18647.395350 eV Total energy + Delta-G solvation = -3349.451161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65141 -39.12829 -37.07076 -35.31246 -34.74734 -33.74284 -31.50908 -29.31907 -27.46470 -27.34806 -27.30165 -24.41424 -23.47467 -21.38315 -19.61658 -18.63894 -17.91784 -16.81270 -16.47995 -15.93351 -15.67243 -15.06852 -14.74892 -14.44996 -14.21596 -14.01406 -13.88666 -13.39042 -12.87281 -12.62166 -12.47434 -12.10470 -11.98310 -11.85385 -11.65566 -11.63046 -11.34193 -11.29895 -11.20456 -10.97411 -10.71377 -10.32107 -10.29687 -10.24317 -9.85034 -9.07061 -9.00462 -8.08464 -7.74986 -6.35275 -3.96652 2.34943 3.09735 3.14056 3.23762 3.29150 3.77341 4.01028 4.12738 4.74516 4.76961 4.79435 4.93364 5.01555 5.31989 5.44980 5.50674 5.54395 5.66304 5.68072 5.70861 5.78599 5.85524 5.89145 5.89496 5.98073 6.19533 6.30888 6.37229 6.43824 6.63521 6.83941 7.19775 7.54273 7.62975 8.12144 8.36632 8.59504 9.11509 9.38529 9.85883 10.64400 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.005120 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.382071 B = 5467.634660 C = 5736.349692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.658 3.342 7 O -0.574 6.574 8 N -0.593 5.593 9 C 0.105 3.895 10 C 0.122 3.878 11 N -0.429 5.429 12 C -0.316 4.316 13 H 0.103 0.897 14 C 0.033 3.967 15 N -0.877 5.877 16 Si 0.927 3.073 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.435 3.565 21 O -0.591 6.591 22 C 0.111 3.889 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 8.889 -4.538 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.413 3.587 7 O -0.464 6.464 8 N -0.334 5.334 9 C -0.016 4.016 10 C -0.003 4.003 11 N -0.147 5.147 12 C -0.444 4.444 13 H 0.120 0.880 14 C -0.171 4.171 15 N -0.516 5.516 16 Si 0.754 3.246 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.193 1.193 20 C 0.222 3.778 21 O -0.476 6.476 22 C -0.014 4.014 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.167 8.833 -4.691 13.567 hybrid contribution 0.389 -0.723 0.178 0.840 sum -8.778 8.111 -4.514 12.775 Atomic orbital electron populations 1.22504 0.94227 1.05037 1.02110 1.22019 0.94171 0.91510 0.82502 1.21850 1.02429 0.92664 1.02798 1.22514 1.01799 1.03575 0.96195 1.86310 1.71547 1.23836 1.45986 1.17848 0.78653 0.80372 0.81788 1.90845 1.42166 1.70446 1.42972 1.47098 1.52418 1.12512 1.21380 1.22418 0.98844 0.77661 1.02683 1.21735 0.85515 0.95208 0.97817 1.43054 1.23598 1.06135 1.41908 1.19767 1.15018 1.00780 1.08863 0.87965 1.25370 0.97490 0.99376 0.94850 1.70001 1.46254 1.26673 1.08642 0.85908 0.79403 0.80229 0.79102 1.20271 1.20968 1.19297 1.19562 0.88460 0.82956 0.86842 1.90573 1.35999 1.76300 1.44694 1.21872 0.91112 0.97342 0.91112 0.92331 0.91431 0.89319 0.91384 0.90386 0.91557 0.89232 0.91463 0.92069 0.90917 0.87837 0.89193 0.90012 0.92039 0.89712 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 2 C 0.13 1.77 1.13 -90.61 -0.10 1.66 16 3 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 4 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 5 O -0.36 -5.93 8.68 -40.31 -0.35 -6.28 16 6 C 0.66 11.95 7.77 54.06 0.42 12.37 16 7 O -0.57 -10.89 11.36 -19.28 -0.22 -11.11 16 8 N -0.59 -10.95 2.98 -179.82 -0.54 -11.49 16 9 C 0.11 1.88 6.54 -3.53 -0.02 1.85 16 10 C 0.12 2.68 4.91 -4.41 -0.02 2.66 16 11 N -0.43 -10.85 2.96 -115.81 -0.34 -11.20 16 12 C -0.32 -8.70 8.98 -14.93 -0.13 -8.84 16 13 H 0.10 2.96 7.27 -52.48 -0.38 2.58 16 14 C 0.03 0.86 4.93 -17.47 -0.09 0.77 16 15 N -0.88 -23.12 10.68 55.50 0.59 -22.53 16 16 Si 0.93 20.40 29.59 -169.99 -5.03 15.37 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C 0.43 10.64 7.54 -11.72 -0.09 10.56 16 21 O -0.59 -16.56 16.37 5.55 0.09 -16.47 16 22 C 0.11 2.11 6.53 -5.01 -0.03 2.08 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.41 5.88 -51.93 -0.31 1.11 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.74 7.06 -51.93 -0.37 1.38 16 34 H 0.09 2.21 6.94 -51.93 -0.36 1.85 16 35 H 0.08 1.81 7.42 -51.93 -0.39 1.43 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.11 1.98 7.17 -51.93 -0.37 1.60 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -31.39 307.05 -5.70 -37.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.42 Total: 3.91 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 0.88 Total: 18.07 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.29 Total: -45.21 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.48 Total: -33.85 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.39 -5.70 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146603359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.241 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds