Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47081 * 2 1 4 4 C 1.53003 * 109.47248 * 240.00291 * 2 1 3 5 5 O 1.45197 * 109.47152 * 119.99957 * 2 1 3 6 6 C 1.34635 * 116.99823 * 60.00105 * 5 2 1 7 7 O 1.21507 * 119.99760 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00075 * 179.97438 * 6 5 2 9 9 C 1.47264 * 121.35697 * 180.02562 * 8 6 5 10 10 C 1.53180 * 108.06500 * 118.31619 * 9 8 6 11 11 N 1.45649 * 110.66563 * 47.06737 * 10 9 8 12 12 C 1.37093 * 117.70389 * 157.94926 * 11 10 9 13 13 H 1.08009 * 119.99841 * 203.15465 * 12 11 10 14 14 C 1.38954 * 120.00417 * 22.88635 * 12 11 10 15 15 N 1.31407 * 119.99702 * 17.60293 * 14 12 11 16 16 Si 1.86796 * 120.00425 * 197.60096 * 14 12 11 17 17 H 1.48500 * 109.46934 * 89.99736 * 16 14 12 18 18 H 1.48492 * 109.47527 * 210.00008 * 16 14 12 19 19 H 1.48501 * 109.47087 * 330.00138 * 16 14 12 20 20 C 1.33379 * 124.58757 * 337.66895 * 11 10 9 21 21 O 1.21287 * 118.48867 * 184.55962 * 20 11 10 22 22 C 1.47052 * 121.34964 * 0.02562 * 8 6 5 23 23 H 1.09000 * 109.46985 * 300.00080 * 1 2 3 24 24 H 1.09001 * 109.46920 * 59.99749 * 1 2 3 25 25 H 1.08992 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46862 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47238 * 300.00422 * 3 2 1 28 28 H 1.08998 * 109.46570 * 59.99868 * 3 2 1 29 29 H 1.08992 * 109.46847 * 299.99986 * 4 2 1 30 30 H 1.08999 * 109.46894 * 59.99686 * 4 2 1 31 31 H 1.08997 * 109.47094 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.72668 * 238.15391 * 9 8 6 33 33 H 1.09003 * 109.71859 * 358.80649 * 9 8 6 34 34 H 1.08994 * 109.40777 * 286.67473 * 10 9 8 35 35 H 1.09007 * 109.13441 * 167.28143 * 10 9 8 36 36 H 0.97006 * 120.00038 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.56569 * 102.93622 * 22 8 6 38 38 H 1.08995 * 109.56970 * 342.58222 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5035 8 7 2.0680 -2.6657 2.4166 9 6 1.6907 -4.0756 2.6132 10 6 2.9732 -4.9131 2.6263 11 7 3.9752 -4.3053 3.4911 12 6 4.9686 -5.1131 3.9812 13 1 5.4936 -4.8364 4.8837 14 6 5.2962 -6.2906 3.3202 15 7 4.9229 -6.4696 2.0730 16 14 6.2672 -7.6191 4.2043 17 1 5.3290 -8.5513 4.8797 18 1 7.0883 -8.3696 3.2207 19 1 7.1560 -6.9925 5.2155 20 6 3.9972 -3.0169 3.8354 21 8 4.9306 -2.6100 4.4943 22 6 2.9169 -2.0452 3.4445 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 1.1649 -4.1869 3.5615 33 1 1.0482 -4.4019 1.7953 34 1 3.3693 -4.9848 1.6134 35 1 2.7427 -5.9137 2.9922 36 1 5.1513 -7.2917 1.6116 37 1 2.3125 -1.8002 4.3179 38 1 3.3693 -1.1375 3.0453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146603359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = -117.007711 kcal Electronic energy + Delta-G solvation = -21997.743349 eV Core-core repulsion = 18647.395350 eV Total energy + Delta-G solvation = -3350.347999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03615 -40.85049 -38.48277 -37.08882 -36.42228 -34.91767 -33.45942 -31.00187 -29.08128 -28.32096 -28.24694 -26.31497 -25.08245 -22.77379 -21.07524 -20.29967 -19.41797 -18.48776 -17.98012 -17.36425 -17.26136 -16.80565 -16.41039 -15.99853 -15.73864 -15.38252 -15.34042 -14.59400 -14.49406 -14.21490 -13.58938 -13.47272 -13.27501 -13.08553 -13.05525 -12.85034 -12.82562 -12.68770 -12.49965 -12.40934 -12.29686 -12.25280 -12.08726 -11.36337 -11.20142 -11.02716 -10.76709 -9.80680 -9.72670 -8.34623 -6.06792 1.03277 1.36088 1.42118 1.54597 1.70181 1.91055 2.25832 2.69992 2.96107 3.02134 3.72298 3.79512 3.84242 3.97762 3.99546 4.17950 4.37070 4.40873 4.48054 4.64582 4.66554 4.75462 4.80553 4.82210 4.88835 4.91836 5.12876 5.23846 5.32863 5.34845 5.38841 5.44873 5.45688 6.07992 6.20285 6.36763 7.08122 7.20693 7.43058 7.89773 8.62410 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.005120 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.382071 B = 5467.634660 C = 5736.349692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.658 3.342 7 O -0.584 6.584 8 N -0.598 5.598 9 C 0.117 3.883 10 C 0.131 3.869 11 N -0.440 5.440 12 C -0.354 4.354 13 H 0.077 0.923 14 C 0.002 3.998 15 N -0.894 5.894 16 Si 0.992 3.008 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.275 1.275 20 C 0.423 3.577 21 O -0.636 6.636 22 C 0.128 3.872 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.275 0.725 37 H 0.119 0.881 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 9.671 -4.991 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.413 3.587 7 O -0.475 6.475 8 N -0.340 5.340 9 C -0.004 4.004 10 C 0.007 3.993 11 N -0.157 5.157 12 C -0.482 4.482 13 H 0.095 0.905 14 C -0.201 4.201 15 N -0.531 5.531 16 Si 0.815 3.185 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.200 1.200 20 C 0.212 3.788 21 O -0.524 6.524 22 C 0.003 3.997 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.455 9.622 -5.178 15.123 hybrid contribution 0.801 -0.926 0.222 1.244 sum -9.654 8.696 -4.956 13.907 Atomic orbital electron populations 1.22443 0.93157 1.03811 1.03849 1.22512 0.95220 0.92672 0.81175 1.21890 1.02109 0.90574 1.04617 1.22485 1.01158 1.02313 0.97869 1.86325 1.71602 1.22802 1.47606 1.17908 0.78488 0.81004 0.81251 1.90851 1.42633 1.70946 1.43060 1.47108 1.52508 1.12742 1.21597 1.22327 0.96549 0.76884 1.04679 1.21595 0.86518 0.95905 0.95264 1.43309 1.23841 1.06598 1.41993 1.19738 1.16825 1.02549 1.09120 0.90508 1.26147 0.98018 1.00575 0.95347 1.70103 1.46394 1.27243 1.09394 0.84951 0.78148 0.77474 0.77884 1.18526 1.20175 1.20008 1.20528 0.89218 0.83308 0.85747 1.90532 1.38165 1.77158 1.46536 1.21691 0.90028 0.95447 0.92525 0.91598 0.88704 0.91919 0.91947 0.87452 0.90842 0.92161 0.88425 0.93007 0.88064 0.86705 0.92266 0.90671 0.91504 0.86334 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.98 0.60 -3.15 16 2 C 0.12 2.90 1.13 -10.79 -0.01 2.89 16 3 C -0.13 -2.31 8.85 71.99 0.64 -1.67 16 4 C -0.18 -4.53 8.37 71.98 0.60 -3.93 16 5 O -0.37 -11.54 8.68 -55.44 -0.48 -12.02 16 6 C 0.66 23.20 7.77 129.79 1.01 24.21 16 7 O -0.58 -21.75 11.36 19.82 0.23 -21.53 16 8 N -0.60 -21.39 2.98 -953.24 -2.84 -24.23 16 9 C 0.12 4.03 6.54 86.29 0.56 4.60 16 10 C 0.13 5.84 4.91 86.60 0.43 6.27 16 11 N -0.44 -22.76 2.96 -639.47 -1.89 -24.65 16 12 C -0.35 -20.09 8.98 84.04 0.76 -19.33 16 13 H 0.08 4.65 7.27 -2.91 -0.02 4.63 16 14 C 0.00 0.09 4.93 84.93 0.42 0.51 16 15 N -0.89 -47.60 10.68 21.66 0.23 -47.37 16 16 Si 0.99 41.98 29.59 68.60 2.03 44.01 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 C 0.42 21.00 7.54 87.80 0.66 21.66 16 21 O -0.64 -36.64 16.37 -3.05 -0.05 -36.69 16 22 C 0.13 4.73 6.53 85.45 0.56 5.29 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.70 5.88 -2.39 -0.01 1.69 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.88 5.88 -2.39 -0.01 1.86 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.11 3.73 7.06 -2.39 -0.02 3.71 16 34 H 0.06 2.99 6.94 -2.39 -0.02 2.98 16 35 H 0.08 3.38 7.42 -2.38 -0.02 3.37 16 36 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 37 H 0.12 3.61 8.14 -2.39 -0.02 3.60 16 38 H 0.12 4.10 7.17 -2.39 -0.02 4.08 16 Total: -1.00 -69.91 307.05 4.50 -65.41 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.06 Total: 19.73 kcal Atomic # 6 Polarization: 31.11 SS G_CDS: 6.22 Total: 37.34 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -4.50 Total: -96.25 kcal Atomic # 8 Polarization: -69.93 SS G_CDS: -0.31 Total: -70.24 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.91 4.50 -65.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146603359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.598 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds