Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00331 * 2 1 4 4 O 1.20825 * 119.99730 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00238 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.00906 * 187.54936 * 5 3 2 7 7 C 1.54323 * 109.88620 * 308.66428 * 5 3 2 8 8 C 1.55138 * 103.01892 * 141.69088 * 7 5 3 9 9 C 1.54914 * 101.64960 * 324.34465 * 8 7 5 10 10 N 1.47443 * 109.88813 * 66.43012 * 5 3 2 11 11 C 1.46894 * 111.00170 * 3.85583 * 10 5 3 12 12 C 1.50701 * 109.47615 * 172.37078 * 11 10 5 13 13 O 1.21297 * 119.99113 * 353.73657 * 12 11 10 14 14 N 1.34772 * 120.00739 * 173.74082 * 12 11 10 15 15 C 1.37089 * 120.00246 * 180.27304 * 14 12 11 16 16 H 1.07999 * 120.00056 * 359.72875 * 15 14 12 17 17 C 1.38954 * 119.99736 * 179.72148 * 15 14 12 18 18 N 1.31406 * 120.00405 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99738 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46995 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46972 * 120.00573 * 19 17 15 22 22 H 1.48505 * 109.46951 * 240.00048 * 19 17 15 23 23 H 1.08996 * 109.47118 * 60.00519 * 1 2 3 24 24 H 1.09005 * 109.47311 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47317 * 300.00545 * 1 2 3 26 26 H 1.09005 * 109.47085 * 298.88301 * 6 5 3 27 27 H 1.08997 * 109.47503 * 58.88594 * 6 5 3 28 28 H 1.09001 * 109.46885 * 178.88670 * 6 5 3 29 29 H 1.08999 * 110.70329 * 23.30675 * 7 5 3 30 30 H 1.08996 * 110.85337 * 260.14177 * 7 5 3 31 31 H 1.08996 * 110.99173 * 206.25273 * 8 7 5 32 32 H 1.08998 * 110.99317 * 82.43562 * 8 7 5 33 33 H 1.08997 * 110.37293 * 278.23685 * 9 8 7 34 34 H 1.09004 * 110.36682 * 155.89919 * 9 8 7 35 35 H 1.09008 * 109.47513 * 52.36783 * 11 10 5 36 36 H 1.09001 * 109.47469 * 292.37082 * 11 10 5 37 37 H 0.97005 * 119.99660 * 0.02562 * 14 12 11 38 38 H 0.97004 * 120.00393 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0145 2.7254 0.1893 7 6 4.1376 0.3970 1.1341 8 6 5.4062 -0.2225 0.4910 9 6 4.9464 -0.4261 -0.9743 10 7 4.0968 0.7471 -1.2699 11 6 3.0068 0.3898 -2.1875 12 6 3.5805 0.0338 -3.5348 13 8 4.7654 0.1824 -3.7477 14 7 2.7773 -0.4494 -4.5032 15 6 3.3003 -0.7784 -5.7269 16 1 4.3553 -0.6463 -5.9165 17 6 2.4730 -1.2821 -6.7233 18 7 1.1893 -1.4425 -6.4928 19 14 3.1859 -1.7311 -8.3906 20 1 4.6457 -1.4590 -8.3943 21 1 2.9508 -3.1729 -8.6574 22 1 2.5277 -0.9189 -9.4453 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.6405 3.3315 -0.6358 27 1 3.6189 3.1085 1.1300 28 1 5.1035 2.7697 0.2082 29 1 3.4277 -0.3815 1.4136 30 1 4.4018 1.0046 1.9996 31 1 5.6552 -1.1753 0.9581 32 1 6.2477 0.4682 0.5438 33 1 4.3689 -1.3459 -1.0665 34 1 5.8074 -0.4490 -1.6424 35 1 2.3287 1.2367 -2.2937 36 1 2.4607 -0.4648 -1.7880 37 1 1.8296 -0.5677 -4.3330 38 1 0.6118 -1.7937 -7.1885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186384664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -109.065771 kcal Electronic energy + Delta-G solvation = -21951.163002 eV Core-core repulsion = 18601.159392 eV Total energy + Delta-G solvation = -3350.003610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18092 -38.81159 -37.61398 -36.50338 -33.94732 -32.15654 -31.35191 -31.12044 -28.05104 -26.80984 -25.70606 -24.12898 -22.83562 -21.35875 -19.67250 -19.18771 -17.92965 -17.53171 -16.78225 -16.46984 -15.57663 -15.15679 -14.93357 -14.51958 -14.36114 -13.83978 -13.73019 -13.33089 -13.06794 -12.74219 -12.51647 -12.18235 -12.15257 -12.09510 -11.77267 -11.57554 -11.42480 -11.15104 -10.99476 -10.93975 -10.76412 -10.54046 -10.33672 -10.30476 -10.21805 -9.49837 -8.52017 -8.03359 -7.94512 -6.41063 -3.81751 2.12162 2.65165 3.16865 3.27334 3.34574 3.88310 3.90914 4.22885 4.46257 4.54489 4.68695 5.05418 5.10358 5.11846 5.17750 5.23264 5.26143 5.45143 5.52243 5.64015 5.71274 5.72714 5.80316 5.88268 5.91767 5.96656 6.20115 6.25682 6.29848 6.36646 6.43987 7.09598 7.10090 7.56022 7.70841 8.06450 8.61970 9.18564 9.54522 10.06148 10.76888 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.005388 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.451923 B = 5195.320168 C = 5837.905560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.456 3.544 4 O -0.503 6.503 5 C 0.106 3.894 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.126 4.126 9 C 0.048 3.952 10 N -0.477 5.477 11 C 0.025 3.975 12 C 0.448 3.552 13 O -0.574 6.574 14 N -0.564 5.564 15 C -0.297 4.297 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 1.337 15.925 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.274 6.274 3 C 0.297 3.703 4 O -0.389 6.389 5 C 0.015 3.985 6 C -0.173 4.173 7 C -0.171 4.171 8 C -0.164 4.164 9 C -0.079 4.079 10 N -0.203 5.203 11 C -0.106 4.106 12 C 0.233 3.767 13 O -0.458 6.458 14 N -0.201 5.201 15 C -0.427 4.427 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.085 0.915 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.224 0.776 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.211 2.050 15.390 15.573 hybrid contribution -1.317 -0.855 -0.501 1.649 sum -0.106 1.195 14.888 14.936 Atomic orbital electron populations 1.23297 0.76483 1.03871 1.02560 1.86608 1.23452 1.33452 1.83848 1.24370 0.92498 0.81517 0.71928 1.90646 1.67076 1.36332 1.44848 1.22124 0.84440 0.99304 0.92594 1.21616 1.01939 0.91603 1.02120 1.22917 0.98353 0.98970 0.96857 1.22747 0.97083 1.01152 0.95436 1.23156 0.98151 0.91008 0.95578 1.63631 1.17783 1.31698 1.07225 1.22420 0.93125 1.00816 0.94278 1.19534 0.87518 0.84267 0.85381 1.90513 1.15689 1.57953 1.81640 1.41844 1.10312 1.56395 1.11529 1.19753 0.95954 1.39007 0.87950 0.87791 1.25266 0.95191 0.97444 1.00087 1.69621 1.03778 1.45975 1.34997 0.85796 0.79268 0.77957 0.81299 1.19189 1.20780 1.20757 0.91548 0.87975 0.92097 0.91226 0.92127 0.90595 0.90192 0.89941 0.90392 0.90297 0.93298 0.88141 0.89953 0.91351 0.77585 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.05 7.83 -39.24 -0.31 -5.35 16 3 C 0.46 7.02 4.51 36.01 0.16 7.18 16 4 O -0.50 -8.70 15.80 -18.75 -0.30 -9.00 16 5 C 0.11 1.52 1.10 -131.76 -0.14 1.38 16 6 C -0.12 -1.51 8.03 37.16 0.30 -1.21 16 7 C -0.13 -1.48 5.97 -24.91 -0.15 -1.63 16 8 C -0.13 -1.43 7.08 -24.59 -0.17 -1.60 16 9 C 0.05 0.76 5.71 -2.30 -0.01 0.75 16 10 N -0.48 -8.27 4.49 -218.50 -0.98 -9.25 16 11 C 0.02 0.48 4.12 -4.98 -0.02 0.46 16 12 C 0.45 10.88 7.47 -10.99 -0.08 10.80 16 13 O -0.57 -15.60 14.71 5.54 0.08 -15.52 16 14 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 15 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 16 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 19 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.88 7.33 -51.93 -0.38 0.50 16 30 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 34 H 0.10 1.80 7.41 -51.93 -0.38 1.41 16 35 H 0.08 1.62 7.10 -51.92 -0.37 1.25 16 36 H 0.07 1.25 6.02 -51.93 -0.31 0.94 16 37 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -32.28 313.55 -5.89 -38.17 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.46 Total: 9.27 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.70 Total: 9.52 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.32 Total: -47.94 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.52 Total: -29.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.28 -5.89 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186384664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.892 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds