Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00331 * 2 1 4 4 O 1.20825 * 119.99730 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00238 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.00906 * 187.54936 * 5 3 2 7 7 C 1.54323 * 109.88620 * 308.66428 * 5 3 2 8 8 C 1.55138 * 103.01892 * 141.69088 * 7 5 3 9 9 C 1.54914 * 101.64960 * 324.34465 * 8 7 5 10 10 N 1.47443 * 109.88813 * 66.43012 * 5 3 2 11 11 C 1.46894 * 111.00170 * 3.85583 * 10 5 3 12 12 C 1.50701 * 109.47615 * 172.37078 * 11 10 5 13 13 O 1.21297 * 119.99113 * 353.73657 * 12 11 10 14 14 N 1.34772 * 120.00739 * 173.74082 * 12 11 10 15 15 C 1.37089 * 120.00246 * 180.27304 * 14 12 11 16 16 H 1.07999 * 120.00056 * 359.72875 * 15 14 12 17 17 C 1.38954 * 119.99736 * 179.72148 * 15 14 12 18 18 N 1.31406 * 120.00405 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99738 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46995 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46972 * 120.00573 * 19 17 15 22 22 H 1.48505 * 109.46951 * 240.00048 * 19 17 15 23 23 H 1.08996 * 109.47118 * 60.00519 * 1 2 3 24 24 H 1.09005 * 109.47311 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47317 * 300.00545 * 1 2 3 26 26 H 1.09005 * 109.47085 * 298.88301 * 6 5 3 27 27 H 1.08997 * 109.47503 * 58.88594 * 6 5 3 28 28 H 1.09001 * 109.46885 * 178.88670 * 6 5 3 29 29 H 1.08999 * 110.70329 * 23.30675 * 7 5 3 30 30 H 1.08996 * 110.85337 * 260.14177 * 7 5 3 31 31 H 1.08996 * 110.99173 * 206.25273 * 8 7 5 32 32 H 1.08998 * 110.99317 * 82.43562 * 8 7 5 33 33 H 1.08997 * 110.37293 * 278.23685 * 9 8 7 34 34 H 1.09004 * 110.36682 * 155.89919 * 9 8 7 35 35 H 1.09008 * 109.47513 * 52.36783 * 11 10 5 36 36 H 1.09001 * 109.47469 * 292.37082 * 11 10 5 37 37 H 0.97005 * 119.99660 * 0.02562 * 14 12 11 38 38 H 0.97004 * 120.00393 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0145 2.7254 0.1893 7 6 4.1376 0.3970 1.1341 8 6 5.4062 -0.2225 0.4910 9 6 4.9464 -0.4261 -0.9743 10 7 4.0968 0.7471 -1.2699 11 6 3.0068 0.3898 -2.1875 12 6 3.5805 0.0338 -3.5348 13 8 4.7654 0.1824 -3.7477 14 7 2.7773 -0.4494 -4.5032 15 6 3.3003 -0.7784 -5.7269 16 1 4.3553 -0.6463 -5.9165 17 6 2.4730 -1.2821 -6.7233 18 7 1.1893 -1.4425 -6.4928 19 14 3.1859 -1.7311 -8.3906 20 1 4.6457 -1.4590 -8.3943 21 1 2.9508 -3.1729 -8.6574 22 1 2.5277 -0.9189 -9.4453 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.6405 3.3315 -0.6358 27 1 3.6189 3.1085 1.1300 28 1 5.1035 2.7697 0.2082 29 1 3.4277 -0.3815 1.4136 30 1 4.4018 1.0046 1.9996 31 1 5.6552 -1.1753 0.9581 32 1 6.2477 0.4682 0.5438 33 1 4.3689 -1.3459 -1.0665 34 1 5.8074 -0.4490 -1.6424 35 1 2.3287 1.2367 -2.2937 36 1 2.4607 -0.4648 -1.7880 37 1 1.8296 -0.5677 -4.3330 38 1 0.6118 -1.7937 -7.1885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186384664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -132.282178 kcal Electronic energy + Delta-G solvation = -21952.169741 eV Core-core repulsion = 18601.159392 eV Total energy + Delta-G solvation = -3351.010349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37691 -40.34185 -39.20915 -37.68386 -36.00136 -33.61987 -33.13412 -32.40051 -29.02798 -28.41400 -26.90225 -25.92661 -23.98274 -22.48789 -21.20985 -20.66257 -19.95125 -18.78558 -18.01079 -17.88111 -17.10518 -16.54922 -16.37895 -16.15066 -15.92863 -15.55787 -15.03924 -14.58246 -14.37306 -14.11880 -13.79471 -13.56581 -13.47291 -13.32600 -13.05298 -12.94773 -12.84240 -12.70937 -12.42624 -12.25356 -12.11790 -12.02072 -11.81034 -11.60057 -11.50511 -11.43419 -10.40222 -10.04993 -9.47634 -8.49092 -5.98382 0.92613 1.35447 1.41080 1.55776 1.58777 1.97421 2.24948 2.60356 3.15588 3.23885 3.44621 3.54543 3.69577 4.03793 4.15947 4.20172 4.24139 4.26553 4.28251 4.36505 4.47566 4.66764 4.70407 4.74560 4.89776 4.91341 5.06249 5.13543 5.18622 5.25395 5.34753 5.38927 5.70269 5.86726 5.99191 6.54821 6.55529 7.08740 7.49464 8.04416 8.68814 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.005388 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.451923 B = 5195.320168 C = 5837.905560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.362 6.362 3 C 0.454 3.546 4 O -0.527 6.527 5 C 0.100 3.900 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.043 3.957 10 N -0.496 5.496 11 C 0.045 3.955 12 C 0.445 3.555 13 O -0.607 6.607 14 N -0.572 5.572 15 C -0.332 4.332 16 H 0.082 0.918 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.996 3.004 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.393 0.607 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 0.782 17.285 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.297 3.703 4 O -0.415 6.415 5 C 0.010 3.990 6 C -0.170 4.170 7 C -0.161 4.161 8 C -0.149 4.149 9 C -0.084 4.084 10 N -0.222 5.222 11 C -0.086 4.086 12 C 0.232 3.768 13 O -0.492 6.492 14 N -0.209 5.209 15 C -0.461 4.461 16 H 0.100 0.900 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.819 3.181 20 H -0.196 1.196 21 H -0.194 1.194 22 H -0.197 1.197 23 H 0.073 0.927 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.194 1.487 16.773 16.881 hybrid contribution -1.359 -0.676 -0.908 1.769 sum -0.165 0.810 15.865 15.887 Atomic orbital electron populations 1.23572 0.74930 1.05761 1.02613 1.86585 1.25025 1.32791 1.83387 1.24599 0.92955 0.81485 0.71270 1.90633 1.67691 1.37118 1.46056 1.22317 0.84011 1.00435 0.92269 1.21637 1.02793 0.90508 1.02097 1.22951 0.97892 0.98835 0.96431 1.22721 0.97408 1.02858 0.91918 1.23137 0.96794 0.90190 0.98288 1.63555 1.17421 1.32486 1.08775 1.22135 0.93519 1.00930 0.92041 1.20373 0.87050 0.82723 0.86670 1.90483 1.17195 1.58911 1.82613 1.41913 1.10512 1.56957 1.11547 1.19728 0.95426 1.41360 0.89635 0.90013 1.26091 0.95479 0.96515 1.03217 1.69684 1.04571 1.45668 1.36306 0.84829 0.78213 0.78261 0.76769 1.19624 1.19401 1.19683 0.92735 0.85228 0.90857 0.93795 0.90088 0.89244 0.89654 0.86821 0.87829 0.89190 0.94143 0.91113 0.90379 0.90125 0.77319 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.71 7.83 -51.35 -0.40 -10.11 16 3 C 0.45 13.48 4.51 71.24 0.32 13.80 16 4 O -0.53 -17.89 15.80 21.97 0.35 -17.55 16 5 C 0.10 2.71 1.10 3.13 0.00 2.71 16 6 C -0.11 -2.78 8.03 71.98 0.58 -2.21 16 7 C -0.12 -2.34 5.97 31.78 0.19 -2.15 16 8 C -0.11 -2.21 7.08 31.98 0.23 -1.98 16 9 C 0.04 1.34 5.71 86.78 0.50 1.83 16 10 N -0.50 -17.08 4.49 -845.19 -3.80 -20.88 16 11 C 0.04 1.77 4.12 85.56 0.35 2.12 16 12 C 0.45 22.33 7.47 87.66 0.66 22.98 16 13 O -0.61 -34.22 14.71 -3.08 -0.05 -34.27 16 14 N -0.57 -30.56 5.29 -306.99 -1.62 -32.18 16 15 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 16 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 17 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 18 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 19 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 24 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 26 H 0.04 1.30 8.07 -2.38 -0.02 1.28 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.57 7.33 -2.39 -0.02 1.56 16 30 H 0.11 1.52 7.84 -2.39 -0.02 1.50 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.30 7.66 -2.39 -0.02 1.28 16 34 H 0.07 2.61 7.41 -2.39 -0.02 2.59 16 35 H 0.08 3.13 7.10 -2.38 -0.02 3.12 16 36 H 0.08 2.95 6.02 -2.39 -0.01 2.94 16 37 H 0.39 20.22 7.90 -92.70 -0.73 19.49 16 38 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -70.88 313.55 2.43 -68.45 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.34 Total: 31.19 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.30 Total: 20.19 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -5.14 Total: -103.19 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.10 Total: -61.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -70.88 2.43 -68.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186384664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.828 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds