Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.52993 * 109.47221 * 240.00036 * 2 1 3 5 5 O 1.45205 * 109.47027 * 119.99665 * 2 1 3 6 6 C 1.34635 * 116.99702 * 60.00155 * 5 2 1 7 7 O 1.21518 * 120.00125 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00086 * 179.97438 * 6 5 2 9 9 C 1.47575 * 134.49436 * 179.97438 * 8 6 5 10 10 C 1.53944 * 86.11731 * 155.35763 * 9 8 6 11 11 N 1.46506 * 113.74274 * 137.95197 * 10 9 8 12 12 C 1.34773 * 119.99969 * 156.64909 * 11 10 9 13 13 O 1.21689 * 120.00158 * 0.02562 * 12 11 10 14 14 C 1.46376 * 120.00038 * 179.97438 * 12 11 10 15 15 H 1.08004 * 119.99999 * 0.02562 * 14 12 11 16 16 C 1.40047 * 120.00289 * 180.02562 * 14 12 11 17 17 N 1.30676 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99995 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47004 * 60.00489 * 18 16 14 20 20 H 1.48505 * 109.46859 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47453 * 299.99780 * 18 16 14 22 22 C 1.47812 * 134.45416 * 359.86767 * 8 6 5 23 23 H 1.08999 * 109.47252 * 300.00129 * 1 2 3 24 24 H 1.08994 * 109.46960 * 60.00013 * 1 2 3 25 25 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46908 * 300.00358 * 3 2 1 28 28 H 1.09005 * 109.46776 * 60.00076 * 3 2 1 29 29 H 1.09003 * 109.47153 * 299.99999 * 4 2 1 30 30 H 1.08994 * 109.47194 * 60.00094 * 4 2 1 31 31 H 1.09006 * 109.47211 * 180.02562 * 4 2 1 32 32 H 1.09004 * 113.77027 * 41.06404 * 9 8 6 33 33 H 1.08996 * 113.77596 * 269.66188 * 9 8 6 34 34 H 1.09003 * 113.74626 * 269.15563 * 10 9 8 35 35 H 0.97005 * 119.99811 * 336.92962 * 11 10 9 36 36 H 0.97000 * 119.99487 * 179.97438 * 17 16 14 37 37 H 1.09000 * 113.77162 * 90.38101 * 22 8 6 38 38 H 1.09003 * 113.83503 * 318.91526 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4168 9 6 1.8725 -4.0476 2.8961 10 6 3.1943 -3.8576 3.6620 11 7 3.1711 -4.4007 5.0225 12 6 4.3242 -4.7382 5.6331 13 8 5.3847 -4.5914 5.0546 14 6 4.3010 -5.2803 6.9926 15 1 3.3599 -5.4103 7.5062 16 6 5.4993 -5.6306 7.6273 17 7 6.6381 -5.4729 7.0061 18 14 5.4696 -6.3231 9.3620 19 1 4.6740 -7.5767 9.3809 20 1 6.8578 -6.6118 9.8035 21 1 4.8537 -5.3319 10.2803 22 6 2.9046 -2.3470 3.5929 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1391 31 1 3.1301 -0.7216 -1.2489 32 1 1.9260 -4.7980 2.1073 33 1 1.0037 -4.1697 3.5428 34 1 4.0761 -4.1619 3.0981 35 1 2.3255 -4.5212 5.4823 36 1 7.4680 -5.7152 7.4460 37 1 2.3394 -1.9687 4.4447 38 1 3.7806 -1.7418 3.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186554611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -84.980475 kcal Electronic energy + Delta-G solvation = -20769.544825 eV Core-core repulsion = 17420.585632 eV Total energy + Delta-G solvation = -3348.959194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72504 -39.21539 -36.99565 -36.22252 -34.06447 -32.79130 -32.04195 -28.61749 -27.53467 -27.48340 -26.19111 -26.03038 -22.55075 -20.84965 -19.71317 -19.17150 -17.63261 -17.22472 -16.65171 -16.36957 -15.51388 -15.21235 -15.12962 -14.30567 -14.24632 -13.98411 -13.35783 -13.01191 -12.73460 -12.61469 -12.41969 -12.32114 -12.23758 -11.99849 -11.95439 -11.70859 -11.42087 -11.28721 -11.16670 -11.04837 -10.74142 -10.52466 -10.39680 -10.31119 -9.95709 -8.91488 -8.65097 -7.75225 -7.70871 -6.26019 -4.72592 2.06505 2.95157 3.12519 3.18067 3.19551 3.80998 4.05848 4.43138 4.60873 4.64556 4.72174 4.78824 4.88986 5.15581 5.30304 5.32683 5.40173 5.44384 5.54876 5.58744 5.62727 5.72485 5.73910 5.76051 5.84404 5.90865 5.96981 6.17352 6.23005 6.47228 6.53647 7.36804 7.77059 7.79090 7.94151 8.22873 8.42492 8.95140 9.38670 10.50453 10.68293 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.003304 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.563019 B = 8473.817205 C = 8625.245609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.134 3.866 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.361 6.361 6 C 0.675 3.325 7 O -0.577 6.577 8 N -0.629 5.629 9 C 0.120 3.880 10 C 0.133 3.867 11 N -0.753 5.753 12 C 0.554 3.446 13 O -0.577 6.577 14 C -0.544 4.544 15 H 0.069 0.931 16 C 0.087 3.913 17 N -0.766 5.766 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.088 3.912 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.385 0.615 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 9.486 -9.685 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.097 3.903 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.431 3.569 7 O -0.467 6.467 8 N -0.372 5.372 9 C -0.002 4.002 10 C 0.025 3.975 11 N -0.407 5.407 12 C 0.359 3.641 13 O -0.460 6.460 14 C -0.581 4.581 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.394 5.394 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.036 4.036 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.565 9.586 -10.582 17.186 hybrid contribution -0.574 -0.225 1.001 1.175 sum -10.139 9.361 -9.581 16.800 Atomic orbital electron populations 1.22506 0.94182 1.05006 1.02246 1.22043 0.94257 0.91554 0.82407 1.21849 1.02367 0.92590 1.02919 1.22515 1.01676 1.03511 0.96336 1.86336 1.71680 1.23557 1.45976 1.17448 0.77981 0.80074 0.81393 1.90867 1.41858 1.70554 1.43433 1.48546 1.53549 1.14494 1.20594 1.23653 0.98963 0.80976 0.96574 1.22436 0.97013 0.91082 0.87016 1.46125 1.10412 1.70584 1.13585 1.18276 0.81366 0.77609 0.86868 1.90616 1.29753 1.58474 1.67108 1.20838 0.93720 1.45047 0.98473 0.91298 1.25712 0.94962 0.93712 0.98907 1.70002 0.98147 1.34871 1.36392 0.86406 0.77845 0.79895 0.82453 1.19257 1.20563 1.19256 1.24038 0.93487 1.00340 0.85721 0.92280 0.91303 0.89407 0.91407 0.90277 0.91523 0.89363 0.91328 0.92111 0.89529 0.89443 0.86389 0.78314 0.91925 0.89514 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.37 37.16 0.31 -1.71 16 2 C 0.13 1.60 1.13 -90.62 -0.10 1.50 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.11 8.37 37.15 0.31 -1.80 16 5 O -0.36 -5.44 9.87 -40.31 -0.40 -5.84 16 6 C 0.67 11.16 8.22 54.06 0.44 11.61 16 7 O -0.58 -10.24 12.61 -19.29 -0.24 -10.48 16 8 N -0.63 -9.95 3.61 -184.16 -0.67 -10.61 16 9 C 0.12 1.74 8.59 -2.97 -0.03 1.71 16 10 C 0.13 2.33 4.40 -70.14 -0.31 2.02 16 11 N -0.75 -15.08 5.37 -56.75 -0.30 -15.38 16 12 C 0.55 14.71 7.75 -12.99 -0.10 14.61 16 13 O -0.58 -17.68 14.64 5.20 0.08 -17.61 16 14 C -0.54 -14.54 9.54 -35.63 -0.34 -14.88 16 15 H 0.07 1.67 7.85 -52.48 -0.41 1.25 16 16 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 17 N -0.77 -22.18 11.83 55.55 0.66 -21.53 16 18 Si 0.91 19.39 29.56 -169.99 -5.02 14.36 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.09 1.39 8.69 -2.83 -0.02 1.37 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.12 2.35 7.50 -51.93 -0.39 1.96 16 35 H 0.38 6.59 8.69 -40.82 -0.35 6.23 16 36 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -33.50 321.85 -6.20 -39.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.55 Total: 6.79 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 0.40 Total: 15.74 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.31 Total: -47.52 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.57 Total: -33.93 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.50 -6.20 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186554611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.281 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds