Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.52993 * 109.47221 * 240.00036 * 2 1 3 5 5 O 1.45205 * 109.47027 * 119.99665 * 2 1 3 6 6 C 1.34635 * 116.99702 * 60.00155 * 5 2 1 7 7 O 1.21518 * 120.00125 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00086 * 179.97438 * 6 5 2 9 9 C 1.47575 * 134.49436 * 179.97438 * 8 6 5 10 10 C 1.53944 * 86.11731 * 155.35763 * 9 8 6 11 11 N 1.46506 * 113.74274 * 137.95197 * 10 9 8 12 12 C 1.34773 * 119.99969 * 156.64909 * 11 10 9 13 13 O 1.21689 * 120.00158 * 0.02562 * 12 11 10 14 14 C 1.46376 * 120.00038 * 179.97438 * 12 11 10 15 15 H 1.08004 * 119.99999 * 0.02562 * 14 12 11 16 16 C 1.40047 * 120.00289 * 180.02562 * 14 12 11 17 17 N 1.30676 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99995 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47004 * 60.00489 * 18 16 14 20 20 H 1.48505 * 109.46859 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47453 * 299.99780 * 18 16 14 22 22 C 1.47812 * 134.45416 * 359.86767 * 8 6 5 23 23 H 1.08999 * 109.47252 * 300.00129 * 1 2 3 24 24 H 1.08994 * 109.46960 * 60.00013 * 1 2 3 25 25 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46908 * 300.00358 * 3 2 1 28 28 H 1.09005 * 109.46776 * 60.00076 * 3 2 1 29 29 H 1.09003 * 109.47153 * 299.99999 * 4 2 1 30 30 H 1.08994 * 109.47194 * 60.00094 * 4 2 1 31 31 H 1.09006 * 109.47211 * 180.02562 * 4 2 1 32 32 H 1.09004 * 113.77027 * 41.06404 * 9 8 6 33 33 H 1.08996 * 113.77596 * 269.66188 * 9 8 6 34 34 H 1.09003 * 113.74626 * 269.15563 * 10 9 8 35 35 H 0.97005 * 119.99811 * 336.92962 * 11 10 9 36 36 H 0.97000 * 119.99487 * 179.97438 * 17 16 14 37 37 H 1.09000 * 113.77162 * 90.38101 * 22 8 6 38 38 H 1.09003 * 113.83503 * 318.91526 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4168 9 6 1.8725 -4.0476 2.8961 10 6 3.1943 -3.8576 3.6620 11 7 3.1711 -4.4007 5.0225 12 6 4.3242 -4.7382 5.6331 13 8 5.3847 -4.5914 5.0546 14 6 4.3010 -5.2803 6.9926 15 1 3.3599 -5.4103 7.5062 16 6 5.4993 -5.6306 7.6273 17 7 6.6381 -5.4729 7.0061 18 14 5.4696 -6.3231 9.3620 19 1 4.6740 -7.5767 9.3809 20 1 6.8578 -6.6118 9.8035 21 1 4.8537 -5.3319 10.2803 22 6 2.9046 -2.3470 3.5929 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1391 31 1 3.1301 -0.7216 -1.2489 32 1 1.9260 -4.7980 2.1073 33 1 1.0037 -4.1697 3.5428 34 1 4.0761 -4.1619 3.0981 35 1 2.3255 -4.5212 5.4823 36 1 7.4680 -5.7152 7.4460 37 1 2.3394 -1.9687 4.4447 38 1 3.7806 -1.7418 3.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186554611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -109.591270 kcal Electronic energy + Delta-G solvation = -20770.612029 eV Core-core repulsion = 17420.585632 eV Total energy + Delta-G solvation = -3350.026398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94196 -40.55788 -38.76855 -37.57137 -35.12506 -34.69847 -33.90074 -30.11264 -28.37404 -28.31362 -28.08791 -27.31498 -23.93042 -22.23614 -21.40797 -20.34854 -19.12306 -18.85501 -17.76141 -17.74113 -17.36744 -16.55892 -16.32951 -15.89597 -15.36516 -15.18568 -14.73237 -14.59436 -14.22818 -14.02459 -13.64170 -13.36624 -13.31333 -13.01331 -12.97505 -12.91951 -12.88325 -12.71975 -12.57796 -12.46334 -12.31052 -12.15702 -12.01718 -11.41572 -11.15107 -10.88230 -9.92846 -9.85030 -9.51047 -8.25928 -6.81895 0.90223 1.45182 1.47447 1.59157 1.68121 2.28094 2.48220 2.65055 3.12422 3.40860 3.73124 3.77993 3.78940 3.86786 3.93530 4.14332 4.20700 4.40922 4.51227 4.59399 4.60799 4.63206 4.74954 4.80524 4.86112 4.87055 5.03215 5.10400 5.27094 5.31822 5.36714 5.44458 5.91402 6.19491 6.28765 6.53039 6.91129 7.17899 7.56181 8.51707 8.70113 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.003304 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.563019 B = 8473.817205 C = 8625.245609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.671 3.329 7 O -0.592 6.592 8 N -0.633 5.633 9 C 0.134 3.866 10 C 0.125 3.875 11 N -0.736 5.736 12 C 0.541 3.459 13 O -0.629 6.629 14 C -0.570 4.570 15 H 0.092 0.908 16 C 0.029 3.971 17 N -0.821 5.821 18 Si 0.996 3.004 19 H -0.255 1.255 20 H -0.279 1.279 21 H -0.254 1.254 22 C 0.099 3.901 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.402 0.598 36 H 0.274 0.726 37 H 0.106 0.894 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.143 10.258 -9.002 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.083 3.917 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.428 3.572 7 O -0.484 6.484 8 N -0.376 5.376 9 C 0.013 3.987 10 C 0.016 3.984 11 N -0.390 5.390 12 C 0.346 3.654 13 O -0.516 6.516 14 C -0.606 4.606 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.450 5.450 18 Si 0.815 3.185 19 H -0.179 1.179 20 H -0.204 1.204 21 H -0.178 1.178 22 C -0.025 4.025 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.481 10.380 -9.920 18.383 hybrid contribution -0.043 -0.408 0.670 0.786 sum -11.524 9.972 -9.249 17.827 Atomic orbital electron populations 1.22450 0.93521 1.03644 1.03752 1.22522 0.95012 0.92762 0.81407 1.21886 1.02230 0.90590 1.04476 1.22476 1.01414 1.02214 0.97554 1.86348 1.71801 1.22773 1.47591 1.17549 0.77907 0.80595 0.81141 1.90865 1.42589 1.71071 1.43826 1.48541 1.53548 1.14936 1.20550 1.23632 0.97875 0.80702 0.96470 1.22411 0.97752 0.92611 0.85595 1.45632 1.09481 1.69496 1.14392 1.18581 0.82073 0.77394 0.87345 1.90578 1.32130 1.60542 1.68318 1.21414 0.95022 1.45173 0.99027 0.89010 1.26937 0.94195 0.93452 1.04013 1.70178 0.99238 1.36610 1.39022 0.85094 0.78047 0.79478 0.75837 1.17908 1.20375 1.17806 1.23920 0.93596 0.98580 0.86387 0.91988 0.88581 0.92083 0.91674 0.87392 0.91264 0.92125 0.88491 0.92460 0.89013 0.86490 0.89550 0.76252 0.91641 0.87650 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 2 C 0.12 2.66 1.13 -10.79 -0.01 2.65 16 3 C -0.13 -2.11 8.85 71.98 0.64 -1.47 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.33 16 5 O -0.37 -10.94 9.87 -55.44 -0.55 -11.49 16 6 C 0.67 21.94 8.22 129.79 1.07 23.01 16 7 O -0.59 -20.93 12.61 19.78 0.25 -20.68 16 8 N -0.63 -19.57 3.61 -966.96 -3.49 -23.06 16 9 C 0.13 3.73 8.59 86.49 0.74 4.47 16 10 C 0.12 4.38 4.40 46.75 0.21 4.58 16 11 N -0.74 -29.28 5.37 -451.67 -2.42 -31.71 16 12 C 0.54 29.27 7.75 86.36 0.67 29.94 16 13 O -0.63 -40.10 14.64 -4.31 -0.06 -40.17 16 14 C -0.57 -30.38 9.54 24.83 0.24 -30.15 16 15 H 0.09 4.30 7.85 -2.91 -0.02 4.27 16 16 C 0.03 1.57 5.50 85.30 0.47 2.04 16 17 N -0.82 -48.80 11.83 21.84 0.26 -48.54 16 18 Si 1.00 39.31 29.56 68.60 2.03 41.34 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 22 C 0.10 3.07 8.69 86.45 0.75 3.82 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.69 5.88 -2.39 -0.01 1.67 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.12 2.60 8.11 -2.39 -0.02 2.58 16 34 H 0.09 3.62 7.50 -2.39 -0.02 3.61 16 35 H 0.40 13.14 8.69 -92.70 -0.81 12.34 16 36 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 37 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -75.15 321.85 2.24 -72.91 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.26 Total: 28.87 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 5.97 Total: 32.54 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.66 Total: -103.32 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -0.36 Total: -72.34 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -75.15 2.24 -72.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186554611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.686 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds