Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.58029 * 2 1 4 4 C 1.53120 * 109.52723 * 239.83587 * 2 1 3 5 5 C 1.53037 * 109.27588 * 297.75411 * 4 2 1 6 6 N 1.46847 * 109.52191 * 300.81788 * 5 4 2 7 7 C 1.46909 * 110.99982 * 185.84198 * 6 5 4 8 8 C 1.50701 * 109.46848 * 300.47356 * 7 6 5 9 9 O 1.21295 * 120.00297 * 354.26437 * 8 7 6 10 10 N 1.34776 * 119.99979 * 174.26507 * 8 7 6 11 11 C 1.37099 * 120.00184 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99475 * 0.02562 * 11 10 8 13 13 C 1.38946 * 119.99847 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99840 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47158 * 60.00359 * 15 13 11 17 17 H 1.48499 * 109.47289 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47449 * 300.00482 * 15 13 11 19 19 C 1.46848 * 111.20111 * 61.74475 * 6 5 4 20 20 H 1.08995 * 109.45085 * 58.26397 * 19 6 5 21 21 C 1.50697 * 109.46307 * 178.24154 * 19 6 5 22 22 O 1.20830 * 120.00117 * 20.05442 * 21 19 6 23 23 O 1.34225 * 119.99869 * 200.32816 * 21 19 6 24 24 C 1.53039 * 109.52084 * 298.25710 * 19 6 5 25 25 H 1.09000 * 109.47317 * 299.84693 * 1 2 3 26 26 H 1.09000 * 109.46902 * 59.84588 * 1 2 3 27 27 H 1.09000 * 109.47633 * 179.84455 * 1 2 3 28 28 H 1.09005 * 109.50049 * 57.68920 * 4 2 1 29 29 H 1.08997 * 109.50808 * 177.77316 * 4 2 1 30 30 H 1.08999 * 109.46322 * 60.83076 * 5 4 2 31 31 H 1.08997 * 109.46339 * 180.81203 * 5 4 2 32 32 H 1.09003 * 109.47194 * 60.47027 * 7 6 5 33 33 H 1.08997 * 109.46922 * 180.47057 * 7 6 5 34 34 H 0.96998 * 119.99515 * 359.97438 * 10 8 7 35 35 H 0.96999 * 120.00156 * 179.97438 * 14 13 11 36 36 H 0.96700 * 117.00147 * 179.72963 * 23 21 19 37 37 H 1.08996 * 109.49961 * 179.11916 * 24 19 6 38 38 H 1.09000 * 109.50264 * 299.24128 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2477 5 6 1.5766 -2.1827 -1.2114 6 7 2.0923 -2.8323 0.0003 7 6 1.7822 -4.2683 0.0004 8 6 0.2888 -4.4596 -0.0636 9 8 -0.4490 -3.4990 -0.0002 10 7 -0.2271 -5.6982 -0.1912 11 6 -1.5858 -5.8723 -0.2489 12 1 -2.2426 -5.0169 -0.1925 13 6 -2.1175 -7.1492 -0.3809 14 7 -1.3182 -8.1899 -0.4501 15 14 -3.9687 -7.3864 -0.4603 16 1 -4.5127 -6.6486 -1.6287 17 1 -4.2770 -8.8323 -0.6000 18 1 -4.5882 -6.8668 0.7853 19 6 1.5765 -2.1825 1.2119 20 1 0.4870 -2.2160 1.2059 21 6 2.0945 -2.9051 2.4286 22 8 3.0744 -3.6069 2.3430 23 8 1.4641 -2.7735 3.6063 24 6 2.0416 -0.7249 1.2480 25 1 -0.3634 0.5114 0.8913 26 1 -0.3633 0.5162 -0.8886 27 1 -0.3634 -1.0276 -0.0028 28 1 1.6457 -0.2389 -2.1393 29 1 3.1310 -0.6906 -1.2677 30 1 0.4871 -2.2162 -1.2057 31 1 1.9514 -2.7055 -2.0913 32 1 2.2464 -4.7404 -0.8655 33 1 2.1681 -4.7232 0.9126 34 1 0.3629 -6.4664 -0.2422 35 1 -1.6895 -9.0813 -0.5419 36 1 1.8312 -3.2595 4.3575 37 1 1.6456 -0.2386 2.1394 38 1 3.1309 -0.6909 1.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229307600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -124.823149 kcal Electronic energy + Delta-G solvation = -22239.511555 eV Core-core repulsion = 18888.824653 eV Total energy + Delta-G solvation = -3350.686902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70078 -38.94474 -37.59762 -35.88526 -34.34278 -33.45408 -31.35650 -31.10560 -28.44886 -26.27423 -24.83429 -24.14985 -22.62525 -20.96126 -19.40222 -18.50389 -17.86312 -17.82084 -16.68527 -15.92356 -15.61866 -15.09472 -14.68306 -14.56855 -14.18809 -14.06452 -13.77150 -13.43793 -13.37681 -12.97873 -12.43574 -11.97828 -11.67846 -11.59543 -11.45526 -11.32954 -11.16756 -11.12921 -10.81100 -10.53281 -10.49903 -10.45053 -10.28184 -10.09088 -9.83834 -9.50678 -9.20105 -8.04645 -7.45677 -6.48932 -3.90708 2.45712 3.13653 3.18517 3.21065 3.24876 3.77548 4.11024 4.26920 4.85618 4.94973 5.01937 5.08421 5.18326 5.39425 5.54082 5.63476 5.67492 5.76974 5.83580 5.87983 5.97149 6.05824 6.16262 6.17950 6.21779 6.28391 6.31839 6.39642 6.56388 6.72781 6.81939 7.21672 7.34753 7.47244 7.96084 8.18862 8.50706 9.08059 9.44468 9.94083 10.67331 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.005864 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.139956 B = 4773.831323 C = 5209.597450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.111 4.111 5 C 0.037 3.963 6 N -0.494 5.494 7 C 0.026 3.974 8 C 0.402 3.598 9 O -0.598 6.598 10 N -0.551 5.551 11 C -0.304 4.304 12 H 0.103 0.897 13 C 0.025 3.975 14 N -0.896 5.896 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.077 3.923 20 H 0.122 0.878 21 C 0.484 3.516 22 O -0.506 6.506 23 O -0.516 6.516 24 C -0.098 4.098 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.393 0.607 35 H 0.274 0.726 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 11.594 2.371 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.090 4.090 6 N -0.218 5.218 7 C -0.105 4.105 8 C 0.188 3.812 9 O -0.486 6.486 10 N -0.186 5.186 11 C -0.434 4.434 12 H 0.121 0.879 13 C -0.177 4.177 14 N -0.537 5.537 15 Si 0.758 3.242 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.032 4.032 20 H 0.139 0.861 21 C 0.325 3.675 22 O -0.393 6.393 23 O -0.327 6.327 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.227 0.773 35 H 0.084 0.916 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.373 12.075 2.031 13.804 hybrid contribution -1.098 -1.322 0.441 1.774 sum 5.275 10.753 2.471 12.229 Atomic orbital electron populations 1.22070 0.94728 1.04244 1.00964 1.21085 0.96389 0.98529 0.94473 0.91196 1.21631 1.00861 0.95152 0.97206 1.22401 1.01785 0.93703 0.91080 1.62224 1.57308 1.01438 1.00867 1.22322 0.93415 0.89859 1.04905 1.21105 0.90584 0.84268 0.85239 1.90350 1.61311 1.39326 1.57598 1.42038 1.08039 1.06755 1.61722 1.19682 0.82285 0.93976 1.47482 0.87871 1.25307 1.00544 0.94964 0.96929 1.69605 1.35755 0.99138 1.49169 0.85914 0.82058 0.77143 0.79088 1.19833 1.20874 1.19852 1.21509 1.02739 0.93289 0.85668 0.86130 1.23589 0.80617 0.79003 0.84242 1.90652 1.26044 1.37514 1.85078 1.84565 1.58564 1.69273 1.20298 1.21558 1.01314 0.91946 0.98787 0.93131 0.93029 0.89821 0.91605 0.91644 0.89838 0.91179 0.88901 0.88119 0.77313 0.91628 0.73711 0.90940 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.61 37.15 0.32 -1.88 16 2 C -0.09 -1.07 3.22 -90.50 -0.29 -1.36 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.43 5.60 -26.65 -0.15 -1.58 16 5 C 0.04 0.60 4.75 -3.83 -0.02 0.58 16 6 N -0.49 -8.58 4.46 -229.51 -1.02 -9.60 16 7 C 0.03 0.51 5.41 -4.97 -0.03 0.48 16 8 C 0.40 9.21 7.18 -10.99 -0.08 9.13 16 9 O -0.60 -14.57 10.50 5.54 0.06 -14.51 16 10 N -0.55 -13.83 5.29 -10.96 -0.06 -13.88 16 11 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 12 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 15 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.08 1.30 1.72 -68.87 -0.12 1.18 16 20 H 0.12 2.34 4.16 -51.93 -0.22 2.13 16 21 C 0.48 8.21 6.71 36.00 0.24 8.45 16 22 O -0.51 -9.50 15.32 -18.75 -0.29 -9.79 16 23 O -0.52 -7.36 13.42 -39.24 -0.53 -7.89 16 24 C -0.10 -1.32 4.86 -26.65 -0.13 -1.45 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.41 4.19 -51.93 -0.22 1.20 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.58 4.14 -51.93 -0.22 1.36 16 31 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 33 H 0.10 1.99 5.51 -51.93 -0.29 1.71 16 34 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 36 H 0.40 3.85 9.10 45.56 0.41 4.27 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -30.55 299.88 -6.27 -36.81 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -4.16 Total: 16.45 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.49 Total: 5.66 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.36 Total: -46.99 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.76 Total: -32.19 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.55 -6.27 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229307600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.013 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds