Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.58029 * 2 1 4 4 C 1.53120 * 109.52723 * 239.83587 * 2 1 3 5 5 C 1.53037 * 109.27588 * 297.75411 * 4 2 1 6 6 N 1.46847 * 109.52191 * 300.81788 * 5 4 2 7 7 C 1.46909 * 110.99982 * 185.84198 * 6 5 4 8 8 C 1.50701 * 109.46848 * 300.47356 * 7 6 5 9 9 O 1.21295 * 120.00297 * 354.26437 * 8 7 6 10 10 N 1.34776 * 119.99979 * 174.26507 * 8 7 6 11 11 C 1.37099 * 120.00184 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99475 * 0.02562 * 11 10 8 13 13 C 1.38946 * 119.99847 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99840 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47158 * 60.00359 * 15 13 11 17 17 H 1.48499 * 109.47289 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47449 * 300.00482 * 15 13 11 19 19 C 1.46848 * 111.20111 * 61.74475 * 6 5 4 20 20 H 1.08995 * 109.45085 * 58.26397 * 19 6 5 21 21 C 1.50697 * 109.46307 * 178.24154 * 19 6 5 22 22 O 1.20830 * 120.00117 * 20.05442 * 21 19 6 23 23 O 1.34225 * 119.99869 * 200.32816 * 21 19 6 24 24 C 1.53039 * 109.52084 * 298.25710 * 19 6 5 25 25 H 1.09000 * 109.47317 * 299.84693 * 1 2 3 26 26 H 1.09000 * 109.46902 * 59.84588 * 1 2 3 27 27 H 1.09000 * 109.47633 * 179.84455 * 1 2 3 28 28 H 1.09005 * 109.50049 * 57.68920 * 4 2 1 29 29 H 1.08997 * 109.50808 * 177.77316 * 4 2 1 30 30 H 1.08999 * 109.46322 * 60.83076 * 5 4 2 31 31 H 1.08997 * 109.46339 * 180.81203 * 5 4 2 32 32 H 1.09003 * 109.47194 * 60.47027 * 7 6 5 33 33 H 1.08997 * 109.46922 * 180.47057 * 7 6 5 34 34 H 0.96998 * 119.99515 * 359.97438 * 10 8 7 35 35 H 0.96999 * 120.00156 * 179.97438 * 14 13 11 36 36 H 0.96700 * 117.00147 * 179.72963 * 23 21 19 37 37 H 1.08996 * 109.49961 * 179.11916 * 24 19 6 38 38 H 1.09000 * 109.50264 * 299.24128 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2477 5 6 1.5766 -2.1827 -1.2114 6 7 2.0923 -2.8323 0.0003 7 6 1.7822 -4.2683 0.0004 8 6 0.2888 -4.4596 -0.0636 9 8 -0.4490 -3.4990 -0.0002 10 7 -0.2271 -5.6982 -0.1912 11 6 -1.5858 -5.8723 -0.2489 12 1 -2.2426 -5.0169 -0.1925 13 6 -2.1175 -7.1492 -0.3809 14 7 -1.3182 -8.1899 -0.4501 15 14 -3.9687 -7.3864 -0.4603 16 1 -4.5127 -6.6486 -1.6287 17 1 -4.2770 -8.8323 -0.6000 18 1 -4.5882 -6.8668 0.7853 19 6 1.5765 -2.1825 1.2119 20 1 0.4870 -2.2160 1.2059 21 6 2.0945 -2.9051 2.4286 22 8 3.0744 -3.6069 2.3430 23 8 1.4641 -2.7735 3.6063 24 6 2.0416 -0.7249 1.2480 25 1 -0.3634 0.5114 0.8913 26 1 -0.3633 0.5162 -0.8886 27 1 -0.3634 -1.0276 -0.0028 28 1 1.6457 -0.2389 -2.1393 29 1 3.1310 -0.6906 -1.2677 30 1 0.4871 -2.2162 -1.2057 31 1 1.9514 -2.7055 -2.0913 32 1 2.2464 -4.7404 -0.8655 33 1 2.1681 -4.7232 0.9126 34 1 0.3629 -6.4664 -0.2422 35 1 -1.6895 -9.0813 -0.5419 36 1 1.8312 -3.2595 4.3575 37 1 1.6456 -0.2386 2.1394 38 1 3.1309 -0.6909 1.2676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229307600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -147.935566 kcal Electronic energy + Delta-G solvation = -22240.513784 eV Core-core repulsion = 18888.824653 eV Total energy + Delta-G solvation = -3351.689131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06756 -40.43719 -39.12082 -37.16171 -36.13263 -34.95933 -33.33790 -32.32245 -29.83965 -27.73250 -26.33359 -25.63090 -23.92433 -22.26834 -21.16694 -20.07552 -19.46622 -19.11011 -18.10871 -17.60577 -16.98512 -16.49539 -16.42377 -15.97299 -15.71918 -15.64407 -15.10776 -14.91272 -14.72238 -14.24952 -13.75766 -13.58091 -13.35337 -13.10020 -12.85176 -12.68455 -12.56895 -12.45755 -12.36605 -12.15693 -11.99267 -11.91481 -11.55950 -11.39950 -11.18459 -11.12986 -10.85848 -10.03735 -9.04402 -8.48916 -5.99568 1.12179 1.35956 1.38953 1.49940 1.94907 1.98370 2.26177 2.91403 3.16522 3.17593 3.80198 3.87526 3.99864 4.17723 4.27813 4.35927 4.40629 4.49365 4.59082 4.62429 4.68107 4.83085 4.86528 4.98837 5.08004 5.14004 5.23406 5.28904 5.36036 5.41119 5.54237 5.65944 5.80477 5.95531 6.01142 6.52807 6.98565 7.06504 7.48665 8.01607 8.66424 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.005864 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.139956 B = 4773.831323 C = 5209.597450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.105 4.105 5 C 0.035 3.965 6 N -0.488 5.488 7 C 0.036 3.964 8 C 0.407 3.593 9 O -0.610 6.610 10 N -0.567 5.567 11 C -0.334 4.334 12 H 0.084 0.916 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.271 1.271 19 C 0.073 3.927 20 H 0.094 0.906 21 C 0.483 3.517 22 O -0.528 6.528 23 O -0.513 6.513 24 C -0.094 4.094 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.393 0.607 35 H 0.278 0.722 36 H 0.425 0.575 37 H 0.087 0.913 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 13.001 2.413 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.101 4.101 3 H 0.121 0.879 4 C -0.142 4.142 5 C -0.092 4.092 6 N -0.212 5.212 7 C -0.096 4.096 8 C 0.194 3.806 9 O -0.498 6.498 10 N -0.203 5.203 11 C -0.463 4.463 12 H 0.102 0.898 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.817 3.183 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.037 4.037 20 H 0.111 0.889 21 C 0.326 3.674 22 O -0.417 6.417 23 O -0.326 6.326 24 C -0.131 4.131 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.287 0.713 37 H 0.105 0.895 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.853 13.502 2.094 15.286 hybrid contribution -1.221 -1.682 0.481 2.134 sum 5.632 11.820 2.575 13.344 Atomic orbital electron populations 1.22006 0.95781 1.01909 1.01950 1.21127 0.95366 1.00015 0.93550 0.87896 1.21628 1.01603 0.92642 0.98339 1.22453 0.99974 0.96188 0.90620 1.62340 1.56760 1.00343 1.01739 1.22291 0.90283 0.91676 1.05355 1.21906 0.92265 0.83352 0.83111 1.90371 1.62447 1.39684 1.57331 1.42119 1.07447 1.07451 1.63246 1.19674 0.83282 0.93973 1.49415 0.89833 1.26090 1.04799 0.94295 0.96101 1.69678 1.37386 0.99478 1.49492 0.84981 0.76792 0.77542 0.78989 1.19516 1.19600 1.19665 1.21579 1.01115 0.95505 0.85467 0.88882 1.23650 0.80301 0.78511 0.84931 1.90640 1.27087 1.38417 1.85601 1.84517 1.58229 1.69416 1.20453 1.21613 1.01801 0.89589 1.00141 0.92233 0.91999 0.93725 0.89876 0.90385 0.92835 0.90921 0.87323 0.88477 0.77327 0.91234 0.71299 0.89498 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 8.61 71.98 0.62 -3.45 16 2 C -0.08 -1.81 3.22 -10.71 -0.03 -1.85 16 3 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.10 -2.43 5.60 30.65 0.17 -2.26 16 5 C 0.03 1.09 4.75 86.33 0.41 1.50 16 6 N -0.49 -16.64 4.46 -880.04 -3.92 -20.56 16 7 C 0.04 1.37 5.41 85.56 0.46 1.84 16 8 C 0.41 19.10 7.18 87.66 0.63 19.73 16 9 O -0.61 -30.74 10.50 -3.07 -0.03 -30.77 16 10 N -0.57 -29.28 5.29 -306.99 -1.62 -30.91 16 11 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 12 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 14 N -0.92 -50.09 13.05 21.66 0.28 -49.80 16 15 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 C 0.07 2.40 1.72 44.19 0.08 2.48 16 20 H 0.09 3.67 4.16 -2.39 -0.01 3.66 16 21 C 0.48 16.05 6.71 71.23 0.48 16.53 16 22 O -0.53 -19.46 15.32 21.95 0.34 -19.12 16 23 O -0.51 -14.10 13.42 -51.37 -0.69 -14.79 16 24 C -0.09 -2.31 4.86 30.65 0.15 -2.16 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.52 4.19 -2.39 -0.01 1.51 16 28 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.05 2.05 4.14 -2.39 -0.01 2.04 16 31 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.10 3.86 5.51 -2.39 -0.01 3.85 16 34 H 0.39 19.90 7.90 -92.71 -0.73 19.17 16 35 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.43 7.51 9.10 -74.06 -0.67 6.84 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.38 299.88 0.33 -66.05 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.29 Total: 40.99 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 4.24 Total: 14.19 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -5.26 Total: -101.27 kcal Atomic # 8 Polarization: -64.30 SS G_CDS: -0.39 Total: -64.69 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -66.38 0.33 -66.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229307600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.883 kcal (2) G-P(sol) polarization free energy of solvation -66.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds