Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.57454 * 2 1 4 4 C 1.53122 * 109.52503 * 120.15553 * 2 1 3 5 5 C 1.53035 * 109.27910 * 177.56260 * 4 2 1 6 6 N 1.46850 * 109.52281 * 300.81790 * 5 4 2 7 7 C 1.46895 * 111.00276 * 185.83973 * 6 5 4 8 8 C 1.50703 * 109.46950 * 65.79002 * 7 6 5 9 9 O 1.21296 * 119.99740 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00016 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99622 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00188 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99627 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99888 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47007 * 120.00177 * 15 13 11 18 18 H 1.48503 * 109.47239 * 239.99669 * 15 13 11 19 19 C 1.46849 * 111.19503 * 61.74303 * 6 5 4 20 20 H 1.09007 * 109.45995 * 58.26756 * 19 6 5 21 21 C 1.50700 * 109.46207 * 178.23989 * 19 6 5 22 22 O 1.20822 * 119.99958 * 20.00156 * 21 19 6 23 23 O 1.34234 * 120.00068 * 200.00348 * 21 19 6 24 24 C 1.53035 * 109.52623 * 298.25744 * 19 6 5 25 25 H 1.08998 * 109.46867 * 299.84201 * 1 2 3 26 26 H 1.09007 * 109.46923 * 59.84320 * 1 2 3 27 27 H 1.08997 * 109.47081 * 179.84093 * 1 2 3 28 28 H 1.08997 * 109.50062 * 57.61763 * 4 2 1 29 29 H 1.08999 * 109.53317 * 297.52113 * 4 2 1 30 30 H 1.08996 * 109.46099 * 180.80792 * 5 4 2 31 31 H 1.08998 * 109.46243 * 60.83560 * 5 4 2 32 32 H 1.09000 * 109.47267 * 185.79319 * 7 6 5 33 33 H 1.08999 * 109.47121 * 305.79794 * 7 6 5 34 34 H 0.96997 * 119.99968 * 0.02562 * 10 8 7 35 35 H 0.97003 * 120.00241 * 180.02562 * 14 13 11 36 36 H 0.96698 * 117.00153 * 179.97438 * 23 21 19 37 37 H 1.09007 * 109.50064 * 179.11483 * 24 19 6 38 38 H 1.08991 * 109.50592 * 299.23838 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0418 -0.7250 1.2479 5 6 3.5709 -0.7750 1.2117 6 7 4.0104 -1.4788 0.0001 7 6 5.4671 -1.6677 0.0000 8 6 5.8531 -2.5976 1.1213 9 8 4.9986 -3.0581 1.8486 10 7 7.1477 -2.9184 1.3154 11 6 7.4987 -3.7648 2.3352 12 1 6.7380 -4.1742 2.9832 13 6 8.8335 -4.0951 2.5355 14 7 9.7592 -3.5966 1.7473 15 14 9.3119 -5.2478 3.9254 16 1 8.0927 -5.6683 4.6616 17 1 9.9886 -6.4450 3.3649 18 1 10.2347 -4.5471 4.8542 19 6 3.5709 -0.7751 -1.2116 20 1 3.9674 0.2402 -1.2059 21 6 4.0783 -1.5054 -2.4283 22 8 4.4121 -2.6634 -2.3423 23 8 4.1594 -0.8693 -3.6076 24 6 2.0418 -0.7251 -1.2478 25 1 -0.3633 0.5114 0.8914 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0029 28 1 1.6448 -1.7399 1.2675 29 1 1.7162 -0.1895 2.1397 30 1 3.9379 -1.3032 2.0917 31 1 3.9674 0.2403 1.2060 32 1 5.7777 -2.0979 -0.9521 33 1 5.9583 -0.7049 0.1412 34 1 7.8310 -2.5504 0.7335 35 1 10.6909 -3.8274 1.8869 36 1 4.4912 -1.3790 -4.3594 37 1 1.7163 -0.1889 -2.1393 38 1 1.6448 -1.7399 -1.2674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229307615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -125.686740 kcal Electronic energy + Delta-G solvation = -21516.196572 eV Core-core repulsion = 18165.472223 eV Total energy + Delta-G solvation = -3350.724350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70682 -38.81691 -37.67171 -36.09378 -34.45465 -33.67591 -31.27277 -31.17483 -29.09964 -26.12461 -24.81814 -24.02711 -22.56637 -20.75459 -19.67984 -19.17310 -17.99848 -17.81992 -16.63167 -16.10902 -15.53440 -15.35060 -14.90927 -14.61799 -14.08669 -13.92808 -13.70385 -13.66379 -13.44549 -12.78564 -12.69542 -12.23538 -12.09592 -11.79111 -11.58554 -11.46683 -11.27551 -11.22054 -11.00550 -10.86520 -10.64211 -10.31298 -10.20400 -10.17234 -10.00216 -9.42240 -8.42166 -7.94862 -7.85364 -6.36691 -3.77143 2.23769 2.88870 3.19823 3.29872 3.37351 3.88924 3.97350 4.26372 4.66860 4.72356 4.80498 5.03560 5.09938 5.27153 5.29586 5.31772 5.47975 5.55790 5.59992 5.65496 5.70380 5.83696 5.89851 5.94408 6.04973 6.09740 6.17366 6.32291 6.47011 6.50581 6.52170 7.18620 7.29577 7.60211 7.96699 8.11783 8.67213 9.23238 9.59990 10.11830 10.81425 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004826 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.215121 B = 5800.297244 C = 6630.477862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.495 5.495 7 C 0.034 3.966 8 C 0.452 3.548 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.296 4.296 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.097 3.903 20 H 0.071 0.929 21 C 0.474 3.526 22 O -0.482 6.482 23 O -0.522 6.522 24 C -0.099 4.099 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.025 0.975 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 10.340 -8.184 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.222 5.222 7 C -0.097 4.097 8 C 0.238 3.762 9 O -0.460 6.460 10 N -0.202 5.202 11 C -0.425 4.425 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.545 5.545 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.013 4.013 20 H 0.088 0.912 21 C 0.314 3.686 22 O -0.367 6.367 23 O -0.334 6.334 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.395 9.420 -7.319 17.937 hybrid contribution 1.553 0.079 -0.365 1.597 sum -11.842 9.500 -7.685 17.016 Atomic orbital electron populations 1.21791 0.94800 1.02067 1.01495 1.21201 0.95808 0.99173 0.94877 0.91258 1.21669 0.95109 1.01479 0.96614 1.22337 0.95322 0.95678 0.93854 1.61327 1.12435 1.48634 0.99789 1.22082 0.87408 0.98793 1.01452 1.19540 0.83443 0.86106 0.87156 1.90474 1.49163 1.57158 1.49171 1.41844 1.05774 1.42648 1.29917 1.19751 0.92776 1.22087 1.07935 0.87832 1.25254 0.95413 0.98560 0.98793 1.69625 1.01341 1.44902 1.38605 0.85802 0.78639 0.79517 0.80389 1.19220 1.20787 1.20824 1.21201 0.97585 0.95577 0.86917 0.91172 1.23395 0.74958 0.86030 0.84167 1.90782 1.43397 1.17713 1.84820 1.84517 1.79636 1.49000 1.20235 1.21613 0.90843 1.02546 0.98701 0.92525 0.92851 0.92415 0.90554 0.91431 0.87061 0.95669 0.88434 0.93647 0.77571 0.91997 0.73272 0.90689 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 2 C -0.09 -0.96 2.79 -90.49 -0.25 -1.21 16 3 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 4 C -0.11 -1.43 5.38 -26.65 -0.14 -1.57 16 5 C 0.05 0.88 5.11 -3.83 -0.02 0.86 16 6 N -0.50 -8.68 3.99 -229.51 -0.92 -9.59 16 7 C 0.03 0.66 5.04 -4.98 -0.03 0.63 16 8 C 0.45 11.20 7.46 -10.98 -0.08 11.12 16 9 O -0.58 -15.86 13.90 5.54 0.08 -15.78 16 10 N -0.57 -14.94 5.29 -10.96 -0.06 -14.99 16 11 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 12 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -25.18 13.05 55.50 0.72 -24.46 16 15 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.10 1.33 2.35 -68.87 -0.16 1.17 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 21 C 0.47 6.80 6.64 36.01 0.24 7.04 16 22 O -0.48 -8.90 15.38 -18.75 -0.29 -9.19 16 23 O -0.52 -5.47 13.42 -39.27 -0.53 -6.00 16 24 C -0.10 -1.13 4.64 -26.65 -0.12 -1.25 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 2.19 5.78 -51.93 -0.30 1.89 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 1.93 5.42 -51.93 -0.28 1.65 16 33 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.39 9.97 7.90 -40.82 -0.32 9.65 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.41 2.62 9.10 45.56 0.41 3.04 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -33.79 312.90 -6.41 -40.20 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.65 Total: 10.88 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.47 Total: 7.76 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.25 Total: -49.04 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.74 Total: -30.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.79 -6.41 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229307615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.486 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds