Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.57454 * 2 1 4 4 C 1.53122 * 109.52503 * 120.15553 * 2 1 3 5 5 C 1.53035 * 109.27910 * 177.56260 * 4 2 1 6 6 N 1.46850 * 109.52281 * 300.81790 * 5 4 2 7 7 C 1.46895 * 111.00276 * 185.83973 * 6 5 4 8 8 C 1.50703 * 109.46950 * 65.79002 * 7 6 5 9 9 O 1.21296 * 119.99740 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00016 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99622 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00188 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99627 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99888 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47007 * 120.00177 * 15 13 11 18 18 H 1.48503 * 109.47239 * 239.99669 * 15 13 11 19 19 C 1.46849 * 111.19503 * 61.74303 * 6 5 4 20 20 H 1.09007 * 109.45995 * 58.26756 * 19 6 5 21 21 C 1.50700 * 109.46207 * 178.23989 * 19 6 5 22 22 O 1.20822 * 119.99958 * 20.00156 * 21 19 6 23 23 O 1.34234 * 120.00068 * 200.00348 * 21 19 6 24 24 C 1.53035 * 109.52623 * 298.25744 * 19 6 5 25 25 H 1.08998 * 109.46867 * 299.84201 * 1 2 3 26 26 H 1.09007 * 109.46923 * 59.84320 * 1 2 3 27 27 H 1.08997 * 109.47081 * 179.84093 * 1 2 3 28 28 H 1.08997 * 109.50062 * 57.61763 * 4 2 1 29 29 H 1.08999 * 109.53317 * 297.52113 * 4 2 1 30 30 H 1.08996 * 109.46099 * 180.80792 * 5 4 2 31 31 H 1.08998 * 109.46243 * 60.83560 * 5 4 2 32 32 H 1.09000 * 109.47267 * 185.79319 * 7 6 5 33 33 H 1.08999 * 109.47121 * 305.79794 * 7 6 5 34 34 H 0.96997 * 119.99968 * 0.02562 * 10 8 7 35 35 H 0.97003 * 120.00241 * 180.02562 * 14 13 11 36 36 H 0.96698 * 117.00153 * 179.97438 * 23 21 19 37 37 H 1.09007 * 109.50064 * 179.11483 * 24 19 6 38 38 H 1.08991 * 109.50592 * 299.23838 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0418 -0.7250 1.2479 5 6 3.5709 -0.7750 1.2117 6 7 4.0104 -1.4788 0.0001 7 6 5.4671 -1.6677 0.0000 8 6 5.8531 -2.5976 1.1213 9 8 4.9986 -3.0581 1.8486 10 7 7.1477 -2.9184 1.3154 11 6 7.4987 -3.7648 2.3352 12 1 6.7380 -4.1742 2.9832 13 6 8.8335 -4.0951 2.5355 14 7 9.7592 -3.5966 1.7473 15 14 9.3119 -5.2478 3.9254 16 1 8.0927 -5.6683 4.6616 17 1 9.9886 -6.4450 3.3649 18 1 10.2347 -4.5471 4.8542 19 6 3.5709 -0.7751 -1.2116 20 1 3.9674 0.2402 -1.2059 21 6 4.0783 -1.5054 -2.4283 22 8 4.4121 -2.6634 -2.3423 23 8 4.1594 -0.8693 -3.6076 24 6 2.0418 -0.7251 -1.2478 25 1 -0.3633 0.5114 0.8914 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0029 28 1 1.6448 -1.7399 1.2675 29 1 1.7162 -0.1895 2.1397 30 1 3.9379 -1.3032 2.0917 31 1 3.9674 0.2403 1.2060 32 1 5.7777 -2.0979 -0.9521 33 1 5.9583 -0.7049 0.1412 34 1 7.8310 -2.5504 0.7335 35 1 10.6909 -3.8274 1.8869 36 1 4.4912 -1.3790 -4.3594 37 1 1.7163 -0.1889 -2.1393 38 1 1.6448 -1.7399 -1.2674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229307615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -151.855787 kcal Electronic energy + Delta-G solvation = -21517.331347 eV Core-core repulsion = 18165.472223 eV Total energy + Delta-G solvation = -3351.859125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86848 -40.29233 -39.20478 -37.14417 -36.09793 -35.28791 -33.29262 -32.35291 -30.35101 -27.67576 -25.95447 -25.67376 -23.71491 -21.78816 -21.07723 -20.68161 -19.90707 -19.05856 -17.97238 -17.55915 -16.88741 -16.67553 -16.44119 -16.16253 -15.68070 -15.39519 -15.09650 -14.81587 -14.70706 -14.07845 -13.91585 -13.66296 -13.46399 -13.23956 -12.91538 -12.74417 -12.55303 -12.42125 -12.36090 -12.31566 -12.11734 -11.99821 -11.57113 -11.53012 -11.19682 -11.09700 -10.28097 -10.01570 -9.29304 -8.47609 -5.96633 1.13678 1.35668 1.40293 1.55269 1.89069 2.02611 2.27238 2.64985 3.18531 3.32939 3.71099 3.86098 3.89476 4.07890 4.11516 4.23814 4.33446 4.40548 4.45984 4.52139 4.74415 4.74611 4.82050 4.88359 5.03134 5.07852 5.24215 5.27686 5.38619 5.40754 5.55258 5.58459 5.80971 6.03081 6.08685 6.58368 7.00284 7.11131 7.53216 8.08996 8.70517 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004826 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.215121 B = 5800.297244 C = 6630.477862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.106 4.106 5 C 0.056 3.944 6 N -0.520 5.520 7 C 0.048 3.952 8 C 0.447 3.553 9 O -0.609 6.609 10 N -0.575 5.575 11 C -0.332 4.332 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.923 5.923 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.268 1.268 19 C 0.093 3.907 20 H 0.098 0.902 21 C 0.482 3.518 22 O -0.534 6.534 23 O -0.504 6.504 24 C -0.095 4.095 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.278 0.722 36 H 0.428 0.572 37 H 0.106 0.894 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 12.138 -9.098 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.071 4.071 6 N -0.247 5.247 7 C -0.083 4.083 8 C 0.234 3.766 9 O -0.495 6.495 10 N -0.213 5.213 11 C -0.461 4.461 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.564 5.564 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.193 1.193 19 C -0.016 4.016 20 H 0.116 0.884 21 C 0.324 3.676 22 O -0.423 6.423 23 O -0.318 6.318 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.290 0.710 37 H 0.124 0.876 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.995 11.258 -8.282 19.779 hybrid contribution 1.708 -0.440 -0.156 1.771 sum -12.287 10.818 -8.438 18.418 Atomic orbital electron populations 1.21758 0.93210 1.01930 1.02872 1.21182 0.97019 0.99451 0.92635 0.89214 1.21641 0.92725 1.00867 0.99153 1.22249 0.97444 0.95689 0.91730 1.61210 1.10827 1.50832 1.01863 1.21857 0.89511 0.98313 0.98587 1.20516 0.82491 0.85872 0.87683 1.90449 1.49937 1.58428 1.50701 1.41925 1.06573 1.42917 1.29859 1.19714 0.93112 1.24063 1.09231 0.90238 1.26076 0.94739 0.99564 1.00971 1.69688 1.01812 1.45343 1.39543 0.84836 0.78126 0.77688 0.77446 1.19754 1.19696 1.19292 1.21399 0.99182 0.96061 0.84938 0.88433 1.23524 0.73651 0.85220 0.85170 1.90777 1.45888 1.19902 1.85702 1.84461 1.78954 1.48492 1.19846 1.21664 0.88878 1.02108 1.00601 0.91640 0.91000 0.93368 0.93038 0.89758 0.91612 0.93562 0.88565 0.91218 0.77287 0.91291 0.70984 0.87596 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 2 C -0.08 -1.51 2.79 -10.71 -0.03 -1.54 16 3 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.11 -2.64 5.38 30.65 0.16 -2.47 16 5 C 0.06 1.78 5.11 86.32 0.44 2.22 16 6 N -0.52 -18.11 3.99 -880.05 -3.52 -21.62 16 7 C 0.05 1.90 5.04 85.56 0.43 2.33 16 8 C 0.45 23.00 7.46 87.66 0.65 23.66 16 9 O -0.61 -35.34 13.90 -3.08 -0.04 -35.39 16 10 N -0.58 -31.52 5.29 -306.98 -1.62 -33.14 16 11 C -0.33 -19.65 9.68 84.04 0.81 -18.84 16 12 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -51.52 13.05 21.66 0.28 -51.24 16 15 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.09 2.36 2.35 44.19 0.10 2.47 16 20 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 21 C 0.48 13.03 6.64 71.24 0.47 13.50 16 22 O -0.53 -19.71 15.38 21.98 0.34 -19.37 16 23 O -0.50 -9.08 13.42 -51.46 -0.69 -9.77 16 24 C -0.09 -1.90 4.64 30.65 0.14 -1.76 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.71 5.78 -2.39 -0.01 2.70 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 3.85 5.42 -2.39 -0.01 3.84 16 33 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 34 H 0.39 20.67 7.90 -92.71 -0.73 19.94 16 35 H 0.28 14.41 8.31 -92.71 -0.77 13.63 16 36 H 0.43 4.34 9.10 -74.06 -0.67 3.67 16 37 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.97 312.90 0.78 -75.18 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.32 Total: 31.15 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 4.32 Total: 17.92 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.86 Total: -106.01 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -0.40 Total: -64.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.97 0.78 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229307615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.671 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds