Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50168 * 2 1 4 4 C 1.53114 * 109.50200 * 120.10996 * 2 1 3 5 5 C 1.53118 * 109.16270 * 177.59822 * 4 2 1 6 6 C 1.53040 * 109.27941 * 302.35145 * 5 4 2 7 7 N 1.46846 * 109.52239 * 59.17627 * 6 5 4 8 8 C 1.46901 * 111.00097 * 174.16170 * 7 6 5 9 9 C 1.50700 * 109.47290 * 59.61588 * 8 7 6 10 10 O 1.21297 * 119.99469 * 5.52284 * 9 8 7 11 11 N 1.34768 * 120.00483 * 185.52467 * 9 8 7 12 12 C 1.37098 * 120.00461 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99728 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00095 * 179.97438 * 12 11 9 15 15 N 1.31404 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99753 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47337 * 60.00638 * 16 14 12 18 18 H 1.48501 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47486 * 300.00235 * 16 14 12 20 20 C 1.46844 * 111.20073 * 298.25912 * 7 6 5 21 21 H 1.09005 * 109.46219 * 301.72768 * 20 7 6 22 22 C 1.50699 * 109.46120 * 181.75276 * 20 7 6 23 23 O 1.20829 * 119.99841 * 339.95545 * 22 20 7 24 24 O 1.34225 * 120.00555 * 159.94902 * 22 20 7 25 25 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47683 * 300.08006 * 1 2 3 27 27 H 1.09000 * 109.47105 * 60.08700 * 1 2 3 28 28 H 1.08994 * 109.53119 * 297.50597 * 4 2 1 29 29 H 1.09007 * 109.52134 * 57.69920 * 4 2 1 30 30 H 1.08991 * 109.50910 * 182.41027 * 5 4 2 31 31 H 1.09001 * 109.53770 * 62.30841 * 5 4 2 32 32 H 1.08996 * 109.46310 * 299.16222 * 6 5 4 33 33 H 1.09004 * 109.45912 * 179.18630 * 6 5 4 34 34 H 1.09005 * 109.47457 * 179.61548 * 8 7 6 35 35 H 1.08993 * 109.47276 * 299.61591 * 8 7 6 36 36 H 0.97003 * 119.99811 * 359.97438 * 11 9 8 37 37 H 0.97003 * 120.00598 * 179.97438 * 15 14 12 38 38 H 0.96697 * 117.00421 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7240 1.2485 5 6 3.5711 -0.7721 1.2107 6 6 4.0230 -1.4728 -0.0727 7 7 3.5094 -0.7416 -1.2380 8 6 4.0374 -1.3049 -2.4877 9 6 3.6308 -2.7518 -2.5978 10 8 2.8841 -3.2363 -1.7737 11 7 4.0967 -3.5075 -3.6118 12 6 3.7271 -4.8239 -3.7117 13 1 3.0629 -5.2556 -2.9775 14 6 4.2071 -5.6029 -4.7575 15 7 5.0156 -5.0779 -5.6504 16 14 3.7041 -7.3967 -4.8931 17 1 2.2279 -7.4883 -5.0259 18 1 4.3474 -8.0023 -6.0867 19 1 4.1376 -8.1260 -3.6743 20 6 2.0411 -0.7229 -1.2482 21 1 1.6649 -1.7460 -1.2549 22 6 1.5567 -0.0019 -2.4797 23 8 2.2961 0.7501 -3.0695 24 8 0.3041 -0.1950 -2.9215 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5151 0.8892 27 1 -0.3633 0.5125 -0.8908 28 1 1.7156 -0.1876 2.1398 29 1 1.6453 -1.7395 1.2685 30 1 3.9395 -1.3239 2.0754 31 1 3.9683 0.2427 1.2303 32 1 3.6376 -2.4923 -0.0849 33 1 5.1122 -1.4958 -0.1096 34 1 3.6358 -0.7491 -3.3351 35 1 5.1249 -1.2321 -2.4881 36 1 4.6935 -3.1199 -4.2710 37 1 5.3510 -5.6217 -6.3803 38 1 0.0390 0.2891 -3.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235594294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -126.832821 kcal Electronic energy + Delta-G solvation = -22166.368033 eV Core-core repulsion = 18815.593985 eV Total energy + Delta-G solvation = -3350.774048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70770 -38.84406 -37.45258 -35.89211 -34.33325 -33.45371 -31.90075 -31.33581 -27.91155 -26.57807 -24.98923 -23.91055 -21.68462 -21.14554 -19.58240 -19.19429 -17.94883 -17.82591 -16.56423 -15.90714 -15.81722 -15.02687 -14.67760 -14.61591 -14.05822 -13.95616 -13.73189 -13.38929 -13.26985 -12.70909 -12.54109 -12.21268 -12.00985 -11.82883 -11.57486 -11.26040 -11.16772 -11.00039 -10.72654 -10.54447 -10.49498 -10.46496 -10.29079 -10.18745 -9.82966 -9.50533 -9.27187 -8.04442 -7.48286 -6.48687 -3.90486 2.46813 3.13950 3.18418 3.21227 3.25149 3.77794 4.11183 4.24113 4.81106 4.96030 5.03740 5.04742 5.18771 5.32443 5.51637 5.61008 5.63359 5.73134 5.79365 5.88012 5.99506 6.04381 6.07726 6.14765 6.17132 6.25002 6.29132 6.36713 6.44349 6.69213 6.73546 7.21070 7.33813 7.47402 7.96292 8.19887 8.50838 9.08226 9.44623 9.94324 10.67588 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.005580 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.904957 B = 5016.869890 C = 5318.912951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.039 3.961 7 N -0.495 5.495 8 C 0.027 3.973 9 C 0.402 3.598 10 O -0.598 6.598 11 N -0.551 5.551 12 C -0.305 4.305 13 H 0.103 0.897 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.932 3.068 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.083 3.917 21 H 0.117 0.883 22 C 0.487 3.513 23 O -0.506 6.506 24 O -0.514 6.514 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.394 0.606 37 H 0.274 0.726 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 9.507 8.703 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.094 4.094 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.088 4.088 7 N -0.220 5.220 8 C -0.104 4.104 9 C 0.188 3.812 10 O -0.486 6.486 11 N -0.186 5.186 12 C -0.435 4.435 13 H 0.121 0.879 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.758 3.242 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.026 4.026 21 H 0.134 0.866 22 C 0.329 3.671 23 O -0.394 6.394 24 O -0.325 6.325 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.248 9.577 9.285 14.334 hybrid contribution -0.140 -1.180 -1.376 1.818 sum -5.388 8.397 7.909 12.731 Atomic orbital electron populations 1.21911 0.94371 1.02744 1.01840 1.21072 0.95608 0.99762 0.92982 0.90468 1.21600 0.96000 1.00852 0.96384 1.21591 0.95484 1.01121 0.97132 1.22358 0.99500 0.98403 0.88509 1.62212 1.04942 1.52416 1.02381 1.22315 1.01744 0.92466 0.93922 1.21112 0.86449 0.88994 0.84687 1.90378 1.40947 1.74298 1.42980 1.42037 1.42097 1.10633 1.23820 1.19684 1.27487 0.85586 1.10697 0.87907 1.25309 0.96316 1.00644 0.95470 1.69604 1.32148 1.37689 1.14222 0.85908 0.78868 0.81657 0.77742 1.19846 1.20860 1.19832 1.21538 0.90346 1.01347 0.89358 0.86561 1.23509 0.78865 0.79231 0.85540 1.90651 1.55665 1.35468 1.57571 1.84605 1.32404 1.68257 1.47197 0.91973 0.92428 0.92049 0.91721 0.91389 0.91555 0.91640 0.90294 0.91072 0.88098 0.88868 0.77303 0.91623 0.73877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.77 37.16 0.33 -1.45 16 2 C -0.08 -1.02 2.39 -90.54 -0.22 -1.24 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.11 -1.38 5.29 -26.61 -0.14 -1.52 16 5 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 6 C 0.04 0.65 5.00 -3.83 -0.02 0.63 16 7 N -0.50 -8.73 4.46 -229.52 -1.02 -9.76 16 8 C 0.03 0.52 5.41 -4.98 -0.03 0.50 16 9 C 0.40 9.36 7.18 -10.99 -0.08 9.28 16 10 O -0.60 -15.03 11.22 5.54 0.06 -14.96 16 11 N -0.55 -13.98 5.29 -10.96 -0.06 -14.04 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 16 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.08 1.42 1.49 -68.88 -0.10 1.32 16 21 H 0.12 2.32 5.69 -51.93 -0.30 2.03 16 22 C 0.49 8.25 6.15 36.00 0.22 8.47 16 23 O -0.51 -9.54 15.32 -18.75 -0.29 -9.83 16 24 O -0.51 -7.20 11.74 -39.24 -0.46 -7.66 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.73 6.21 -51.93 -0.32 0.41 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.53 5.67 -51.93 -0.29 1.24 16 33 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.10 2.02 5.51 -51.93 -0.29 1.73 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.40 3.79 9.10 45.56 0.41 4.20 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -31.10 303.71 -6.35 -37.45 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -4.42 Total: 15.63 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.44 Total: 6.36 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.36 Total: -47.39 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.69 Total: -32.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.10 -6.35 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235594294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.379 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds