Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50168 * 2 1 4 4 C 1.53114 * 109.50200 * 120.10996 * 2 1 3 5 5 C 1.53118 * 109.16270 * 177.59822 * 4 2 1 6 6 C 1.53040 * 109.27941 * 302.35145 * 5 4 2 7 7 N 1.46846 * 109.52239 * 59.17627 * 6 5 4 8 8 C 1.46901 * 111.00097 * 174.16170 * 7 6 5 9 9 C 1.50700 * 109.47290 * 59.61588 * 8 7 6 10 10 O 1.21297 * 119.99469 * 5.52284 * 9 8 7 11 11 N 1.34768 * 120.00483 * 185.52467 * 9 8 7 12 12 C 1.37098 * 120.00461 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99728 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00095 * 179.97438 * 12 11 9 15 15 N 1.31404 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99753 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47337 * 60.00638 * 16 14 12 18 18 H 1.48501 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47486 * 300.00235 * 16 14 12 20 20 C 1.46844 * 111.20073 * 298.25912 * 7 6 5 21 21 H 1.09005 * 109.46219 * 301.72768 * 20 7 6 22 22 C 1.50699 * 109.46120 * 181.75276 * 20 7 6 23 23 O 1.20829 * 119.99841 * 339.95545 * 22 20 7 24 24 O 1.34225 * 120.00555 * 159.94902 * 22 20 7 25 25 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47683 * 300.08006 * 1 2 3 27 27 H 1.09000 * 109.47105 * 60.08700 * 1 2 3 28 28 H 1.08994 * 109.53119 * 297.50597 * 4 2 1 29 29 H 1.09007 * 109.52134 * 57.69920 * 4 2 1 30 30 H 1.08991 * 109.50910 * 182.41027 * 5 4 2 31 31 H 1.09001 * 109.53770 * 62.30841 * 5 4 2 32 32 H 1.08996 * 109.46310 * 299.16222 * 6 5 4 33 33 H 1.09004 * 109.45912 * 179.18630 * 6 5 4 34 34 H 1.09005 * 109.47457 * 179.61548 * 8 7 6 35 35 H 1.08993 * 109.47276 * 299.61591 * 8 7 6 36 36 H 0.97003 * 119.99811 * 359.97438 * 11 9 8 37 37 H 0.97003 * 120.00598 * 179.97438 * 15 14 12 38 38 H 0.96697 * 117.00421 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7240 1.2485 5 6 3.5711 -0.7721 1.2107 6 6 4.0230 -1.4728 -0.0727 7 7 3.5094 -0.7416 -1.2380 8 6 4.0374 -1.3049 -2.4877 9 6 3.6308 -2.7518 -2.5978 10 8 2.8841 -3.2363 -1.7737 11 7 4.0967 -3.5075 -3.6118 12 6 3.7271 -4.8239 -3.7117 13 1 3.0629 -5.2556 -2.9775 14 6 4.2071 -5.6029 -4.7575 15 7 5.0156 -5.0779 -5.6504 16 14 3.7041 -7.3967 -4.8931 17 1 2.2279 -7.4883 -5.0259 18 1 4.3474 -8.0023 -6.0867 19 1 4.1376 -8.1260 -3.6743 20 6 2.0411 -0.7229 -1.2482 21 1 1.6649 -1.7460 -1.2549 22 6 1.5567 -0.0019 -2.4797 23 8 2.2961 0.7501 -3.0695 24 8 0.3041 -0.1950 -2.9215 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5151 0.8892 27 1 -0.3633 0.5125 -0.8908 28 1 1.7156 -0.1876 2.1398 29 1 1.6453 -1.7395 1.2685 30 1 3.9395 -1.3239 2.0754 31 1 3.9683 0.2427 1.2303 32 1 3.6376 -2.4923 -0.0849 33 1 5.1122 -1.4958 -0.1096 34 1 3.6358 -0.7491 -3.3351 35 1 5.1249 -1.2321 -2.4881 36 1 4.6935 -3.1199 -4.2710 37 1 5.3510 -5.6217 -6.3803 38 1 0.0390 0.2891 -3.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235594294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -150.334113 kcal Electronic energy + Delta-G solvation = -22167.387125 eV Core-core repulsion = 18815.593985 eV Total energy + Delta-G solvation = -3351.793140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08358 -40.42193 -38.95046 -37.17408 -36.14596 -34.94611 -33.37812 -33.04490 -29.42371 -27.82765 -26.68144 -25.37597 -22.97532 -22.35502 -21.15977 -20.70794 -19.86890 -19.15119 -18.09011 -17.55351 -17.14081 -16.60483 -16.33203 -15.98497 -15.71503 -15.56461 -15.17411 -14.73786 -14.58395 -14.01603 -13.74158 -13.55781 -13.47259 -13.31793 -13.11732 -12.92161 -12.49266 -12.42791 -12.27131 -12.15972 -11.98473 -11.84781 -11.57727 -11.42089 -11.28323 -11.13403 -10.98515 -10.06018 -9.11997 -8.50463 -6.01416 1.12382 1.35385 1.38553 1.49729 1.92547 1.97219 2.25490 2.87598 3.14501 3.15439 3.74432 3.90665 3.91897 4.17954 4.27510 4.34168 4.35641 4.49219 4.52578 4.57040 4.73168 4.79884 4.90128 4.96714 5.01903 5.12911 5.20957 5.23059 5.35226 5.38563 5.52817 5.55041 5.77681 5.93134 5.97782 6.50573 6.99149 7.04505 7.46184 7.99117 8.64948 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.005580 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.904957 B = 5016.869890 C = 5318.912951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 H 0.083 0.917 4 C -0.109 4.109 5 C -0.109 4.109 6 C 0.037 3.963 7 N -0.490 5.490 8 C 0.036 3.964 9 C 0.406 3.594 10 O -0.616 6.616 11 N -0.565 5.565 12 C -0.336 4.336 13 H 0.083 0.917 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.270 1.270 20 C 0.080 3.920 21 H 0.084 0.916 22 C 0.487 3.513 23 O -0.529 6.529 24 O -0.509 6.509 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.394 0.606 37 H 0.279 0.721 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 10.245 9.737 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 H 0.101 0.899 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.090 4.090 7 N -0.213 5.213 8 C -0.095 4.095 9 C 0.193 3.807 10 O -0.504 6.504 11 N -0.201 5.201 12 C -0.466 4.466 13 H 0.101 0.899 14 C -0.212 4.212 15 N -0.559 5.559 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.030 4.030 21 H 0.102 0.898 22 C 0.330 3.670 23 O -0.418 6.418 24 O -0.322 6.322 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.706 10.334 10.322 15.681 hybrid contribution -0.059 -1.354 -1.670 2.150 sum -5.765 8.980 8.652 13.738 Atomic orbital electron populations 1.21887 0.92970 1.02456 1.03093 1.21139 0.96768 0.99521 0.91620 0.89854 1.21625 0.95528 1.00382 0.97081 1.21587 0.95936 1.01563 0.95560 1.22416 0.99743 0.96940 0.89895 1.62335 1.05554 1.51584 1.01870 1.22293 1.02832 0.89325 0.95098 1.21916 0.85082 0.90332 0.83387 1.90386 1.41389 1.75280 1.43382 1.42118 1.42946 1.10383 1.24663 1.19673 1.28585 0.86995 1.11321 0.89946 1.26106 0.95931 1.04503 0.94668 1.69675 1.32555 1.39138 1.14517 0.84967 0.78522 0.76633 0.78096 1.19645 1.19477 1.19502 1.21616 0.89781 1.00122 0.91480 0.89850 1.23512 0.79355 0.78794 0.85312 1.90638 1.56419 1.36621 1.58149 1.84559 1.30984 1.68325 1.48326 0.93010 0.89675 0.92295 0.88439 0.92838 0.89648 0.90337 0.93792 0.90556 0.88387 0.87144 0.77242 0.91156 0.71462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.77 71.98 0.63 -2.53 16 2 C -0.07 -1.81 2.39 -10.74 -0.03 -1.84 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.11 -2.45 5.29 30.67 0.16 -2.29 16 5 C -0.11 -2.57 6.09 30.65 0.19 -2.38 16 6 C 0.04 1.20 5.00 86.33 0.43 1.63 16 7 N -0.49 -17.07 4.46 -880.05 -3.92 -20.99 16 8 C 0.04 1.41 5.41 85.56 0.46 1.88 16 9 C 0.41 19.42 7.18 87.66 0.63 20.05 16 10 O -0.62 -32.06 11.22 -3.08 -0.03 -32.09 16 11 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 12 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 13 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 14 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 15 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 16 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 C 0.08 2.69 1.49 44.19 0.07 2.75 16 21 H 0.08 3.42 5.69 -2.38 -0.01 3.41 16 22 C 0.49 16.29 6.15 71.24 0.44 16.72 16 23 O -0.53 -19.61 15.32 21.95 0.34 -19.27 16 24 O -0.51 -13.86 11.74 -51.37 -0.60 -14.47 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.29 6.21 -2.39 -0.01 1.27 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.75 5.67 -2.39 -0.01 1.73 16 33 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 34 H 0.10 3.94 5.51 -2.38 -0.01 3.93 16 35 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.39 20.05 7.90 -92.71 -0.73 19.32 16 37 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.42 7.43 9.10 -74.06 -0.67 6.76 16 Total: -1.00 -67.68 303.71 0.42 -67.25 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.31 Total: 40.09 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 4.26 Total: 15.60 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.26 Total: -101.89 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -0.30 Total: -65.83 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.68 0.42 -67.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235594294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.080 kcal (2) G-P(sol) polarization free energy of solvation -67.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds