Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00363 * 2 1 4 4 O 1.20830 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00251 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.27595 * 60.63255 * 5 3 2 7 7 C 1.53991 * 110.30555 * 298.54541 * 5 3 2 8 8 N 1.47902 * 107.05702 * 242.30805 * 7 5 3 9 9 C 1.46902 * 111.00151 * 214.15747 * 8 7 5 10 10 C 1.50697 * 109.47354 * 176.63738 * 9 8 7 11 11 O 1.21292 * 120.00157 * 6.13306 * 10 9 8 12 12 N 1.34783 * 119.99957 * 186.13847 * 10 9 8 13 13 C 1.37102 * 119.99828 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00040 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99993 * 180.27518 * 13 12 10 16 16 N 1.31407 * 120.00103 * 179.72890 * 15 13 12 17 17 Si 1.86801 * 119.99747 * 359.72243 * 15 13 12 18 18 H 1.48494 * 109.47141 * 90.00487 * 17 15 13 19 19 H 1.48505 * 109.46869 * 210.00313 * 17 15 13 20 20 H 1.48499 * 109.47293 * 330.00016 * 17 15 13 21 21 C 1.48537 * 105.81964 * 334.67101 * 8 7 5 22 22 C 1.54601 * 110.31036 * 182.82828 * 5 3 2 23 23 H 1.09005 * 110.72305 * 22.33423 * 22 5 3 24 24 C 1.53001 * 110.72404 * 259.23228 * 22 5 3 25 25 H 1.08999 * 109.47049 * 60.00066 * 1 2 3 26 26 H 1.08995 * 109.47676 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46941 * 300.00546 * 1 2 3 28 28 H 1.09002 * 109.91919 * 122.95738 * 7 5 3 29 29 H 1.08993 * 110.08606 * 1.75169 * 7 5 3 30 30 H 1.09003 * 109.46711 * 56.64024 * 9 8 7 31 31 H 1.08995 * 109.47222 * 296.64290 * 9 8 7 32 32 H 0.96991 * 119.99799 * 359.97438 * 12 10 9 33 33 H 0.97002 * 119.99927 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.66653 * 157.64652 * 21 8 7 35 35 H 1.09002 * 110.66332 * 280.77146 * 21 8 7 36 36 H 1.09006 * 109.47073 * 59.99812 * 24 22 5 37 37 H 1.08993 * 109.47031 * 179.97438 * 24 22 5 38 38 H 1.09001 * 109.46718 * 299.99726 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9694 0.7940 -0.8919 7 6 4.1366 0.6133 1.2677 8 7 4.8496 1.6662 2.0230 9 6 6.0241 1.1157 2.7126 10 6 6.7698 2.2293 3.4018 11 8 6.3052 3.3496 3.4204 12 7 7.9530 1.9804 3.9974 13 6 8.6315 2.9937 4.6239 14 1 8.2182 3.9914 4.6398 15 6 9.8540 2.7384 5.2330 16 7 10.5070 3.7107 5.8289 17 14 10.5692 1.0129 5.2049 18 1 11.4178 0.8485 3.9975 19 1 11.3929 0.7987 6.4218 20 1 9.4654 0.0200 5.1732 21 6 5.2508 2.6840 1.0183 22 6 4.0265 2.7489 0.0711 23 1 3.2422 3.3778 0.4925 24 6 4.4387 3.2553 -1.3126 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.8308 -0.1808 0.9924 29 1 3.3274 0.2053 1.8733 30 1 6.6794 0.6347 1.9864 31 1 5.7010 0.3828 3.4519 32 1 8.3243 1.0845 3.9828 33 1 11.3602 3.5323 6.2544 34 1 5.4199 3.6494 1.4952 35 1 6.1396 2.3604 0.4767 36 1 3.5902 3.1840 -1.9932 37 1 4.7584 4.2947 -1.2387 38 1 5.2607 2.6480 -1.6917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251898401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -109.182972 kcal Electronic energy + Delta-G solvation = -21002.490944 eV Core-core repulsion = 17652.482252 eV Total energy + Delta-G solvation = -3350.008693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90676 -39.18938 -37.77898 -36.51888 -34.05999 -33.16721 -31.65944 -30.62347 -28.09219 -27.30101 -25.65085 -24.18849 -22.21024 -21.12201 -19.86280 -19.37204 -18.29859 -17.70898 -17.13682 -16.50126 -15.97273 -15.34428 -14.87001 -14.83296 -14.57084 -13.79520 -13.54767 -13.40454 -13.25663 -13.11273 -12.63846 -12.49044 -12.44424 -12.22788 -11.94813 -11.90396 -11.46515 -11.17486 -11.08324 -10.98269 -10.72273 -10.62899 -10.59745 -10.44776 -9.97821 -9.54998 -8.56229 -8.20713 -8.08926 -6.31403 -3.82858 2.07116 2.52476 3.02334 3.06006 3.14666 3.72694 3.93266 4.09929 4.29432 4.46819 4.66649 4.77609 4.87794 4.95272 5.05471 5.13127 5.20641 5.28102 5.34359 5.43139 5.54686 5.60142 5.67436 5.76763 5.81380 5.84320 5.95666 6.09052 6.19192 6.34935 6.50113 7.05149 7.08809 7.57770 7.60708 8.14039 8.59651 8.94885 9.41892 9.82505 10.81713 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.003879 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.542476 B = 7216.430817 C = 7562.379201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.500 6.500 5 C -0.090 4.090 6 H 0.113 0.887 7 C 0.046 3.954 8 N -0.494 5.494 9 C 0.034 3.966 10 C 0.451 3.549 11 O -0.559 6.559 12 N -0.590 5.590 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.043 3.957 22 C -0.086 4.086 23 H 0.102 0.898 24 C -0.142 4.142 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.370 0.630 33 H 0.273 0.727 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 -11.373 -13.836 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.315 3.685 4 O -0.387 6.387 5 C -0.110 4.110 6 H 0.131 0.869 7 C -0.082 4.082 8 N -0.218 5.218 9 C -0.098 4.098 10 C 0.237 3.763 11 O -0.440 6.440 12 N -0.230 5.230 13 C -0.433 4.433 14 H 0.138 0.862 15 C -0.161 4.161 16 N -0.521 5.521 17 Si 0.706 3.294 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.084 4.084 22 C -0.105 4.105 23 H 0.121 0.879 24 C -0.199 4.199 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.075 -10.015 -13.274 21.785 hybrid contribution 1.063 -1.831 -0.458 2.166 sum -13.012 -11.845 -13.732 22.320 Atomic orbital electron populations 1.23256 0.76476 1.03572 1.02584 1.86508 1.23337 1.33605 1.84237 1.23584 0.91809 0.81233 0.71876 1.90658 1.66912 1.36315 1.44770 1.22082 0.87344 1.00284 1.01267 0.86907 1.22829 0.99043 0.94134 0.92195 1.64580 1.22251 1.09694 1.25257 1.22134 0.91751 0.97201 0.98700 1.19581 0.82603 0.89674 0.84442 1.90540 1.67606 1.23455 1.62428 1.42203 1.19225 1.10781 1.50772 1.19431 1.01383 0.92313 1.30179 0.86237 1.25034 0.96367 0.97787 0.96957 1.69620 1.15395 1.31558 1.35556 0.86678 0.79796 0.84126 0.78834 1.19671 1.20167 1.19459 1.23478 0.94496 0.99201 0.91228 1.22213 0.99023 0.92696 0.96595 0.87932 1.21767 1.00933 1.01959 0.95270 0.92025 0.88176 0.91787 0.92413 0.89734 0.93145 0.88857 0.79720 0.91610 0.86856 0.93858 0.92618 0.91575 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.89 10.49 -39.24 -0.41 -4.30 16 3 C 0.47 5.94 7.05 36.01 0.25 6.19 16 4 O -0.50 -7.62 15.19 -18.75 -0.28 -7.90 16 5 C -0.09 -1.03 3.07 -90.41 -0.28 -1.31 16 6 H 0.11 1.02 7.85 -51.93 -0.41 0.61 16 7 C 0.05 0.57 6.32 -2.76 -0.02 0.55 16 8 N -0.49 -7.99 5.11 -231.90 -1.18 -9.17 16 9 C 0.03 0.56 5.30 -4.98 -0.03 0.54 16 10 C 0.45 10.15 7.42 -10.98 -0.08 10.06 16 11 O -0.56 -14.75 13.87 5.55 0.08 -14.67 16 12 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 13 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 17 Si 0.88 19.20 27.73 -169.99 -4.71 14.49 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 21 C 0.04 0.68 5.03 -1.90 -0.01 0.67 16 22 C -0.09 -1.14 2.99 -88.76 -0.27 -1.40 16 23 H 0.10 1.57 6.91 -51.93 -0.36 1.21 16 24 C -0.14 -1.52 9.16 37.16 0.34 -1.18 16 25 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 29 H 0.08 1.02 7.64 -51.93 -0.40 0.63 16 30 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.37 7.64 5.77 -40.82 -0.24 7.40 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.11 2.19 6.43 -51.93 -0.33 1.86 16 35 H 0.04 0.65 7.88 -51.93 -0.41 0.24 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -33.51 315.52 -5.78 -39.29 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.47 Total: 8.59 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.74 Total: 7.80 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.47 Total: -48.05 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.62 Total: -26.87 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.51 -5.78 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251898401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.892 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds