Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00363 * 2 1 4 4 O 1.20830 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00251 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.27595 * 60.63255 * 5 3 2 7 7 C 1.53991 * 110.30555 * 298.54541 * 5 3 2 8 8 N 1.47902 * 107.05702 * 242.30805 * 7 5 3 9 9 C 1.46902 * 111.00151 * 214.15747 * 8 7 5 10 10 C 1.50697 * 109.47354 * 176.63738 * 9 8 7 11 11 O 1.21292 * 120.00157 * 6.13306 * 10 9 8 12 12 N 1.34783 * 119.99957 * 186.13847 * 10 9 8 13 13 C 1.37102 * 119.99828 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00040 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99993 * 180.27518 * 13 12 10 16 16 N 1.31407 * 120.00103 * 179.72890 * 15 13 12 17 17 Si 1.86801 * 119.99747 * 359.72243 * 15 13 12 18 18 H 1.48494 * 109.47141 * 90.00487 * 17 15 13 19 19 H 1.48505 * 109.46869 * 210.00313 * 17 15 13 20 20 H 1.48499 * 109.47293 * 330.00016 * 17 15 13 21 21 C 1.48537 * 105.81964 * 334.67101 * 8 7 5 22 22 C 1.54601 * 110.31036 * 182.82828 * 5 3 2 23 23 H 1.09005 * 110.72305 * 22.33423 * 22 5 3 24 24 C 1.53001 * 110.72404 * 259.23228 * 22 5 3 25 25 H 1.08999 * 109.47049 * 60.00066 * 1 2 3 26 26 H 1.08995 * 109.47676 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46941 * 300.00546 * 1 2 3 28 28 H 1.09002 * 109.91919 * 122.95738 * 7 5 3 29 29 H 1.08993 * 110.08606 * 1.75169 * 7 5 3 30 30 H 1.09003 * 109.46711 * 56.64024 * 9 8 7 31 31 H 1.08995 * 109.47222 * 296.64290 * 9 8 7 32 32 H 0.96991 * 119.99799 * 359.97438 * 12 10 9 33 33 H 0.97002 * 119.99927 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.66653 * 157.64652 * 21 8 7 35 35 H 1.09002 * 110.66332 * 280.77146 * 21 8 7 36 36 H 1.09006 * 109.47073 * 59.99812 * 24 22 5 37 37 H 1.08993 * 109.47031 * 179.97438 * 24 22 5 38 38 H 1.09001 * 109.46718 * 299.99726 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9694 0.7940 -0.8919 7 6 4.1366 0.6133 1.2677 8 7 4.8496 1.6662 2.0230 9 6 6.0241 1.1157 2.7126 10 6 6.7698 2.2293 3.4018 11 8 6.3052 3.3496 3.4204 12 7 7.9530 1.9804 3.9974 13 6 8.6315 2.9937 4.6239 14 1 8.2182 3.9914 4.6398 15 6 9.8540 2.7384 5.2330 16 7 10.5070 3.7107 5.8289 17 14 10.5692 1.0129 5.2049 18 1 11.4178 0.8485 3.9975 19 1 11.3929 0.7987 6.4218 20 1 9.4654 0.0200 5.1732 21 6 5.2508 2.6840 1.0183 22 6 4.0265 2.7489 0.0711 23 1 3.2422 3.3778 0.4925 24 6 4.4387 3.2553 -1.3126 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.8308 -0.1808 0.9924 29 1 3.3274 0.2053 1.8733 30 1 6.6794 0.6347 1.9864 31 1 5.7010 0.3828 3.4519 32 1 8.3243 1.0845 3.9828 33 1 11.3602 3.5323 6.2544 34 1 5.4199 3.6494 1.4952 35 1 6.1396 2.3604 0.4767 36 1 3.5902 3.1840 -1.9932 37 1 4.7584 4.2947 -1.2387 38 1 5.2607 2.6480 -1.6917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251898401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -135.461274 kcal Electronic energy + Delta-G solvation = -21003.630457 eV Core-core repulsion = 17652.482252 eV Total energy + Delta-G solvation = -3351.148205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87931 -40.60540 -39.22510 -37.49191 -36.00522 -34.39193 -33.70670 -31.59667 -29.29016 -28.24925 -26.95840 -25.75373 -23.29597 -22.22433 -21.25478 -20.83430 -20.18520 -18.65754 -18.12196 -17.66058 -17.36570 -16.86437 -16.28730 -16.19168 -15.81438 -15.11366 -14.92435 -14.61786 -14.45179 -14.36307 -14.18891 -13.84654 -13.44830 -13.32189 -13.17469 -13.00869 -12.83101 -12.54615 -12.39738 -12.08242 -11.96598 -11.81370 -11.77857 -11.68115 -11.48204 -11.41479 -10.34498 -10.22528 -9.33241 -8.39952 -6.00958 1.12806 1.31794 1.37071 1.46303 1.70698 1.96878 2.24671 2.64427 3.16274 3.17886 3.36294 3.51812 3.82476 4.11311 4.17344 4.19959 4.30620 4.33394 4.35606 4.39284 4.50769 4.52421 4.66684 4.73140 4.78401 4.86341 4.90325 5.13440 5.23918 5.30933 5.38387 5.54050 5.86938 5.91304 6.03701 6.61234 6.69845 6.90036 7.41145 7.98968 8.77869 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.003879 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.542476 B = 7216.430817 C = 7562.379201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.083 4.083 6 H 0.150 0.850 7 C 0.050 3.950 8 N -0.525 5.525 9 C 0.046 3.954 10 C 0.449 3.551 11 O -0.608 6.608 12 N -0.590 5.590 13 C -0.327 4.327 14 H 0.053 0.947 15 C -0.016 4.016 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.256 1.256 19 H -0.277 1.277 20 H -0.229 1.229 21 C 0.046 3.954 22 C -0.082 4.082 23 H 0.070 0.930 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.390 0.610 33 H 0.279 0.721 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 -16.120 -15.608 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.318 3.682 4 O -0.425 6.425 5 C -0.103 4.103 6 H 0.167 0.833 7 C -0.077 4.077 8 N -0.250 5.250 9 C -0.085 4.085 10 C 0.237 3.763 11 O -0.492 6.492 12 N -0.232 5.232 13 C -0.457 4.457 14 H 0.072 0.928 15 C -0.215 4.215 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.180 1.180 19 H -0.202 1.202 20 H -0.152 1.152 21 C -0.081 4.081 22 C -0.101 4.101 23 H 0.089 0.911 24 C -0.194 4.194 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.226 0.774 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.137 -14.797 -15.064 25.411 hybrid contribution 0.936 -0.225 0.102 0.968 sum -13.201 -15.021 -14.962 24.975 Atomic orbital electron populations 1.23546 0.74946 1.05752 1.02321 1.86495 1.24819 1.32373 1.83631 1.23804 0.92267 0.81216 0.70920 1.90657 1.67752 1.37592 1.46545 1.22101 0.86750 0.98761 1.02639 0.83256 1.22879 0.99336 0.93637 0.91890 1.64472 1.22480 1.11439 1.26617 1.22085 0.91977 0.94657 0.99794 1.20879 0.81944 0.90668 0.82851 1.90541 1.68663 1.26357 1.63595 1.42010 1.19637 1.10587 1.51004 1.18991 1.02775 0.91338 1.32563 0.92840 1.26134 0.95999 1.03910 0.95412 1.69811 1.16165 1.35080 1.36659 0.85354 0.79723 0.77187 0.79184 1.18010 1.20202 1.15248 1.23272 0.96229 0.97162 0.91481 1.22048 0.96957 0.94013 0.97066 0.91135 1.21740 1.01966 1.01779 0.93921 0.91850 0.84768 0.92609 0.88820 0.89572 0.89200 0.86021 0.77421 0.91176 0.91869 0.92560 0.91668 0.92468 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.70 10.49 -51.35 -0.54 -7.24 16 3 C 0.47 11.00 7.05 71.24 0.50 11.51 16 4 O -0.54 -16.17 15.19 21.95 0.33 -15.84 16 5 C -0.08 -1.66 3.07 -10.66 -0.03 -1.70 16 6 H 0.15 1.93 7.85 -2.39 -0.02 1.91 16 7 C 0.05 1.03 6.32 86.45 0.55 1.58 16 8 N -0.53 -16.04 5.11 -887.59 -4.54 -20.58 16 9 C 0.05 1.38 5.30 85.56 0.45 1.83 16 10 C 0.45 20.17 7.42 87.66 0.65 20.82 16 11 O -0.61 -33.83 13.87 -3.07 -0.04 -33.87 16 12 N -0.59 -27.56 5.09 -306.98 -1.56 -29.12 16 13 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 14 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 15 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 16 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 17 Si 0.97 38.30 27.73 68.60 1.90 40.20 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 21 C 0.05 1.45 5.03 86.65 0.44 1.88 16 22 C -0.08 -2.10 2.99 -9.59 -0.03 -2.13 16 23 H 0.07 2.27 6.91 -2.38 -0.02 2.25 16 24 C -0.14 -2.75 9.16 71.98 0.66 -2.09 16 25 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 26 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.09 1.32 7.68 -2.39 -0.02 1.31 16 29 H 0.09 1.77 7.64 -2.39 -0.02 1.76 16 30 H 0.09 2.04 7.98 -2.39 -0.02 2.03 16 31 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.39 14.86 5.77 -92.72 -0.53 14.32 16 33 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.06 2.62 6.43 -2.39 -0.02 2.61 16 35 H 0.06 1.58 7.88 -2.39 -0.02 1.57 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -81.09 315.52 2.04 -79.05 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.48 Total: 29.23 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.70 Total: 14.52 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -5.80 Total: -106.05 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.25 Total: -56.95 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.20 kcal Total: -81.09 2.04 -79.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251898401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.412 kcal (2) G-P(sol) polarization free energy of solvation -81.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds