Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 N 1.46497 * 109.47073 * 184.85058 * 3 2 1 5 5 C 1.37102 * 120.00169 * 96.02609 * 4 3 2 6 6 H 1.07995 * 120.00679 * 175.05878 * 5 4 3 7 7 C 1.38954 * 119.99535 * 355.06036 * 5 4 3 8 8 N 1.31405 * 120.00508 * 326.64531 * 7 5 4 9 9 Si 1.86800 * 119.99718 * 146.64856 * 7 5 4 10 10 H 1.48500 * 109.47191 * 94.98631 * 9 7 5 11 11 H 1.48504 * 109.47244 * 214.98002 * 9 7 5 12 12 H 1.48495 * 109.47319 * 334.98208 * 9 7 5 13 13 C 1.34780 * 120.00304 * 276.02755 * 4 3 2 14 14 O 1.21293 * 119.99907 * 185.12061 * 13 4 3 15 15 C 1.50702 * 119.99531 * 5.12096 * 13 4 3 16 16 H 1.08996 * 110.33067 * 44.12787 * 15 13 4 17 17 C 1.54480 * 110.46542 * 281.81249 * 15 13 4 18 18 C 1.54506 * 104.06228 * 217.14682 * 17 15 13 19 19 C 1.54479 * 104.06426 * 359.97438 * 18 17 15 20 20 H 1.08998 * 110.47021 * 265.10444 * 19 18 17 21 21 C 1.50696 * 110.37406 * 142.80947 * 19 18 17 22 22 N 1.34779 * 119.99953 * 68.17053 * 21 19 18 23 23 O 1.21284 * 120.00568 * 247.89192 * 21 19 18 24 24 O 1.44425 * 110.36513 * 166.37987 * 15 13 4 25 25 H 1.09000 * 109.47075 * 59.99172 * 1 2 3 26 26 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46629 * 299.99891 * 1 2 3 28 28 H 1.09003 * 109.46629 * 240.00109 * 2 1 3 29 29 H 1.08992 * 109.47042 * 120.00487 * 2 1 3 30 30 H 1.09000 * 109.47102 * 64.85357 * 3 2 1 31 31 H 1.09000 * 109.47366 * 304.84983 * 3 2 1 32 32 H 0.96996 * 120.00823 * 180.02562 * 8 7 5 33 33 H 1.08995 * 110.51093 * 335.78972 * 17 15 13 34 34 H 1.08998 * 110.50760 * 98.50231 * 17 15 13 35 35 H 1.09001 * 110.50818 * 241.35878 * 18 17 15 36 36 H 1.08994 * 110.51305 * 118.64649 * 18 17 15 37 37 H 0.96992 * 120.00331 * 179.72909 * 22 21 19 38 38 H 0.97008 * 119.99864 * 359.72001 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4441 -0.1168 5 6 4.0897 1.6027 -1.3445 6 1 5.1639 1.6840 -1.4214 7 6 3.3049 1.6590 -2.4898 8 7 2.1948 0.9594 -2.5606 9 14 3.8280 2.7290 -3.9288 10 1 4.5778 1.9055 -4.9111 11 1 2.6244 3.3040 -4.5814 12 1 4.6977 3.8281 -3.4380 13 6 4.2646 1.2896 0.9826 14 8 5.4711 1.3836 0.9006 15 6 3.6199 1.0001 2.3137 16 1 2.8421 0.2449 2.2014 17 6 3.0310 2.2926 2.9211 18 6 3.2992 2.1515 4.4362 19 6 4.0179 0.7901 4.5650 20 1 3.3023 0.0019 4.7989 21 6 5.0862 0.8591 5.6255 22 7 4.7416 0.9952 6.9214 23 8 6.2561 0.7870 5.3136 24 8 4.6118 0.5625 3.2679 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7494 1.9306 0.9303 31 1 1.6075 1.9808 -0.8433 32 1 1.6471 0.9984 -3.3602 33 1 3.5420 3.1691 2.5228 34 1 1.9601 2.3524 2.7268 35 1 2.3609 2.1415 4.9908 36 1 3.9428 2.9582 4.7869 37 1 5.4290 1.0357 7.6044 38 1 3.8059 1.0529 7.1709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276645806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -105.007713 kcal Electronic energy + Delta-G solvation = -21828.787865 eV Core-core repulsion = 18478.960225 eV Total energy + Delta-G solvation = -3349.827640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23795 -38.85263 -37.40736 -35.22892 -33.81884 -32.52060 -31.89311 -31.25647 -29.58931 -25.97572 -25.07279 -23.61424 -21.88614 -20.65355 -20.49968 -19.17884 -17.74910 -17.08139 -16.84959 -16.25584 -15.94525 -14.95688 -14.74133 -14.34896 -14.05215 -13.89149 -13.70686 -13.63806 -13.41647 -12.97619 -12.32541 -11.90788 -11.84698 -11.58661 -11.42026 -11.32060 -11.00737 -10.80093 -10.74413 -10.45945 -10.37251 -10.12541 -9.99898 -9.78214 -9.64007 -9.40893 -8.83113 -8.24381 -7.77466 -6.43666 -3.70874 2.60519 3.08715 3.17834 3.28294 3.37215 3.75460 4.07047 4.31267 4.54089 4.67857 4.85566 4.92254 5.08294 5.22612 5.28216 5.45312 5.58618 5.68072 5.77279 5.89777 5.94350 5.98625 6.21181 6.27350 6.28739 6.54132 6.64807 6.72350 6.80020 6.91469 7.19402 7.25156 7.44009 7.68025 8.10892 8.23955 8.51840 9.20318 9.43462 10.01214 10.59538 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.005414 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.373817 B = 5170.414052 C = 5830.776804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.119 3.881 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.106 0.894 7 C 0.040 3.960 8 N -0.850 5.850 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.447 3.553 14 O -0.567 6.567 15 C 0.062 3.938 16 H 0.087 0.913 17 C -0.142 4.142 18 C -0.140 4.140 19 C 0.051 3.949 20 H 0.093 0.907 21 C 0.521 3.479 22 N -0.857 5.857 23 O -0.513 6.513 24 O -0.314 6.314 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.098 0.902 32 H 0.267 0.733 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 1.111 14.181 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C -0.004 4.004 4 N -0.157 5.157 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.165 4.165 8 N -0.488 5.488 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.234 3.766 14 O -0.450 6.450 15 C 0.001 3.999 16 H 0.104 0.896 17 C -0.180 4.180 18 C -0.178 4.178 19 C -0.012 4.012 20 H 0.111 0.889 21 C 0.305 3.695 22 N -0.423 5.423 23 O -0.385 6.385 24 O -0.231 6.231 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.226 0.969 13.506 15.348 hybrid contribution -0.496 0.479 -0.255 0.736 sum -7.722 1.448 13.251 15.405 Atomic orbital electron populations 1.21596 0.97002 1.00194 1.00652 1.21919 0.94350 0.98255 1.02210 1.21622 0.81451 0.97044 1.00325 1.43696 1.04731 1.61647 1.05666 1.19614 0.94356 1.48573 0.81721 0.87664 1.25072 0.96125 0.96839 0.98428 1.70211 1.15931 1.33606 1.29080 0.86288 0.78323 0.81403 0.80975 1.20521 1.20812 1.19376 1.19358 0.87415 0.85377 0.84462 1.90566 1.14125 1.54937 1.85366 1.23065 0.90538 0.95610 0.90665 0.89557 1.22954 1.02030 0.99322 0.93691 1.22900 1.00670 0.96421 0.97832 1.22854 0.93278 0.98342 0.86684 0.88931 1.20323 0.90034 0.75751 0.83429 1.43739 1.12139 1.78695 1.07739 1.90812 1.19460 1.46841 1.81435 1.89424 1.37885 1.84035 1.11759 0.92476 0.93975 0.94490 0.88202 0.94926 0.94476 0.88353 0.92269 0.89842 0.89499 0.89658 0.90249 0.76636 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.13 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.12 2.50 4.30 -4.05 -0.02 2.49 16 4 N -0.44 -11.04 2.64 -114.81 -0.30 -11.34 16 5 C -0.32 -8.75 9.39 -14.93 -0.14 -8.89 16 6 H 0.11 3.16 7.35 -52.49 -0.39 2.77 16 7 C 0.04 1.01 4.71 -17.47 -0.08 0.93 16 8 N -0.85 -20.99 9.19 55.50 0.51 -20.48 16 9 Si 0.90 20.14 29.66 -169.99 -5.04 15.10 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.45 11.44 6.80 -10.98 -0.07 11.36 16 14 O -0.57 -17.27 16.20 -13.24 -0.21 -17.48 16 15 C 0.06 1.23 2.82 -27.11 -0.08 1.16 16 16 H 0.09 1.55 5.62 -51.93 -0.29 1.26 16 17 C -0.14 -2.16 5.74 -25.16 -0.14 -2.30 16 18 C -0.14 -1.65 6.62 -25.16 -0.17 -1.82 16 19 C 0.05 0.72 3.71 -27.11 -0.10 0.62 16 20 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 21 C 0.52 7.61 7.34 -10.99 -0.08 7.53 16 22 N -0.86 -7.13 8.87 31.22 0.28 -6.86 16 23 O -0.51 -10.55 17.39 -13.65 -0.24 -10.79 16 24 O -0.31 -6.65 10.21 -64.06 -0.65 -7.31 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.10 2.31 6.60 -51.93 -0.34 1.97 16 29 H 0.03 0.60 6.07 -51.93 -0.32 0.29 16 30 H 0.04 0.66 5.14 -51.93 -0.27 0.39 16 31 H 0.10 2.23 5.90 -51.93 -0.31 1.92 16 32 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 33 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 34 H 0.09 1.08 6.82 -51.93 -0.35 0.73 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 37 H 0.40 2.88 8.93 -40.82 -0.36 2.51 16 38 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -36.11 308.40 -6.73 -42.84 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.05 Total: 5.03 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.66 Total: 6.64 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.48 Total: -38.68 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.11 Total: -35.57 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.04 Total: 15.10 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.11 -6.73 -42.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.168 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds