Wall clock time and date at job start Mon Mar 30 2020 01:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 N 1.46497 * 109.47073 * 184.85058 * 3 2 1 5 5 C 1.37102 * 120.00169 * 96.02609 * 4 3 2 6 6 H 1.07995 * 120.00679 * 175.05878 * 5 4 3 7 7 C 1.38954 * 119.99535 * 355.06036 * 5 4 3 8 8 N 1.31405 * 120.00508 * 326.64531 * 7 5 4 9 9 Si 1.86800 * 119.99718 * 146.64856 * 7 5 4 10 10 H 1.48500 * 109.47191 * 94.98631 * 9 7 5 11 11 H 1.48504 * 109.47244 * 214.98002 * 9 7 5 12 12 H 1.48495 * 109.47319 * 334.98208 * 9 7 5 13 13 C 1.34780 * 120.00304 * 276.02755 * 4 3 2 14 14 O 1.21293 * 119.99907 * 185.12061 * 13 4 3 15 15 C 1.50702 * 119.99531 * 5.12096 * 13 4 3 16 16 H 1.08996 * 110.33067 * 44.12787 * 15 13 4 17 17 C 1.54480 * 110.46542 * 281.81249 * 15 13 4 18 18 C 1.54506 * 104.06228 * 217.14682 * 17 15 13 19 19 C 1.54479 * 104.06426 * 359.97438 * 18 17 15 20 20 H 1.08998 * 110.47021 * 265.10444 * 19 18 17 21 21 C 1.50696 * 110.37406 * 142.80947 * 19 18 17 22 22 N 1.34779 * 119.99953 * 68.17053 * 21 19 18 23 23 O 1.21284 * 120.00568 * 247.89192 * 21 19 18 24 24 O 1.44425 * 110.36513 * 166.37987 * 15 13 4 25 25 H 1.09000 * 109.47075 * 59.99172 * 1 2 3 26 26 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46629 * 299.99891 * 1 2 3 28 28 H 1.09003 * 109.46629 * 240.00109 * 2 1 3 29 29 H 1.08992 * 109.47042 * 120.00487 * 2 1 3 30 30 H 1.09000 * 109.47102 * 64.85357 * 3 2 1 31 31 H 1.09000 * 109.47366 * 304.84983 * 3 2 1 32 32 H 0.96996 * 120.00823 * 180.02562 * 8 7 5 33 33 H 1.08995 * 110.51093 * 335.78972 * 17 15 13 34 34 H 1.08998 * 110.50760 * 98.50231 * 17 15 13 35 35 H 1.09001 * 110.50818 * 241.35878 * 18 17 15 36 36 H 1.08994 * 110.51305 * 118.64649 * 18 17 15 37 37 H 0.96992 * 120.00331 * 179.72909 * 22 21 19 38 38 H 0.97008 * 119.99864 * 359.72001 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4441 -0.1168 5 6 4.0897 1.6027 -1.3445 6 1 5.1639 1.6840 -1.4214 7 6 3.3049 1.6590 -2.4898 8 7 2.1948 0.9594 -2.5606 9 14 3.8280 2.7290 -3.9288 10 1 4.5778 1.9055 -4.9111 11 1 2.6244 3.3040 -4.5814 12 1 4.6977 3.8281 -3.4380 13 6 4.2646 1.2896 0.9826 14 8 5.4711 1.3836 0.9006 15 6 3.6199 1.0001 2.3137 16 1 2.8421 0.2449 2.2014 17 6 3.0310 2.2926 2.9211 18 6 3.2992 2.1515 4.4362 19 6 4.0179 0.7901 4.5650 20 1 3.3023 0.0019 4.7989 21 6 5.0862 0.8591 5.6255 22 7 4.7416 0.9952 6.9214 23 8 6.2561 0.7870 5.3136 24 8 4.6118 0.5625 3.2679 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7494 1.9306 0.9303 31 1 1.6075 1.9808 -0.8433 32 1 1.6471 0.9984 -3.3602 33 1 3.5420 3.1691 2.5228 34 1 1.9601 2.3524 2.7268 35 1 2.3609 2.1415 4.9908 36 1 3.9428 2.9582 4.7869 37 1 5.4290 1.0357 7.6044 38 1 3.8059 1.0529 7.1709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276645806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:18 Heat of formation + Delta-G solvation = -133.766920 kcal Electronic energy + Delta-G solvation = -21830.034958 eV Core-core repulsion = 18478.960225 eV Total energy + Delta-G solvation = -3351.074733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56733 -40.38429 -38.90388 -37.16070 -34.85134 -34.32113 -33.27405 -32.89115 -30.91439 -27.67779 -26.65590 -25.14695 -23.11133 -22.15892 -21.56529 -20.91880 -19.04561 -18.66143 -18.20135 -17.64304 -17.32927 -16.60271 -16.35321 -15.71289 -15.58014 -15.45362 -15.23983 -15.17902 -14.69430 -14.47847 -13.87945 -13.71485 -13.26538 -13.08251 -12.85009 -12.64462 -12.63029 -12.33129 -12.12566 -12.09411 -12.01665 -11.82863 -11.39943 -11.09281 -10.76401 -10.74169 -10.69141 -10.20331 -9.72034 -8.42784 -5.79102 1.31008 1.42410 1.51825 1.54758 1.85166 2.15252 2.32423 2.84407 2.94802 3.30623 3.52731 3.78764 3.84570 4.03320 4.06431 4.12684 4.32481 4.48679 4.49435 4.58582 4.73108 4.84087 4.90255 4.96883 5.07051 5.10438 5.24333 5.40317 5.47776 5.62987 5.64587 5.89326 5.93892 6.09060 6.46314 6.54839 7.19786 7.33872 7.47580 8.07338 8.57840 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.005414 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.373817 B = 5170.414052 C = 5830.776804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.119 3.881 4 N -0.441 5.441 5 C -0.369 4.369 6 H 0.062 0.938 7 C 0.024 3.976 8 N -0.842 5.842 9 Si 0.964 3.036 10 H -0.278 1.278 11 H -0.258 1.258 12 H -0.283 1.283 13 C 0.422 3.578 14 O -0.640 6.640 15 C 0.070 3.930 16 H 0.110 0.890 17 C -0.139 4.139 18 C -0.125 4.125 19 C 0.039 3.961 20 H 0.138 0.862 21 C 0.518 3.482 22 N -0.820 5.820 23 O -0.589 6.589 24 O -0.370 6.370 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.277 0.723 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 1.481 15.998 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C -0.004 4.004 4 N -0.158 5.158 5 C -0.496 4.496 6 H 0.080 0.920 7 C -0.182 4.182 8 N -0.478 5.478 9 Si 0.788 3.212 10 H -0.204 1.204 11 H -0.182 1.182 12 H -0.209 1.209 13 C 0.211 3.789 14 O -0.528 6.528 15 C 0.010 3.990 16 H 0.127 0.873 17 C -0.177 4.177 18 C -0.162 4.162 19 C -0.021 4.021 20 H 0.155 0.845 21 C 0.302 3.698 22 N -0.387 5.387 23 O -0.468 6.468 24 O -0.288 6.288 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.244 0.756 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.504 1.332 15.375 19.248 hybrid contribution 0.746 0.319 -0.835 1.164 sum -10.758 1.651 14.540 18.162 Atomic orbital electron populations 1.21512 0.93558 1.01589 1.01778 1.21786 0.97201 0.96535 1.00655 1.21802 0.78733 0.98376 1.01462 1.43905 1.06564 1.60440 1.04940 1.19360 0.93136 1.53046 0.84072 0.92030 1.25638 0.96192 0.96535 0.99839 1.70250 1.15632 1.32019 1.29902 0.85422 0.78550 0.79202 0.78040 1.20441 1.18210 1.20861 1.20544 0.86976 0.84549 0.86789 1.90498 1.17296 1.58169 1.86852 1.22962 0.89966 0.98530 0.87561 0.87303 1.22996 1.03478 0.95513 0.95740 1.22959 1.03084 0.94475 0.95711 1.23358 0.93720 1.01312 0.83756 0.84471 1.20612 0.89056 0.74943 0.85188 1.43419 1.13956 1.75655 1.05678 1.90789 1.22323 1.50874 1.82841 1.89381 1.40006 1.84648 1.14814 0.93545 0.92500 0.91128 0.92472 0.93901 0.90605 0.90141 0.91232 0.92770 0.85562 0.83386 0.90841 0.75581 0.74369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.91 71.98 0.71 -2.81 16 2 C -0.12 -4.61 5.57 30.59 0.17 -4.44 16 3 C 0.12 4.86 4.30 86.38 0.37 5.23 16 4 N -0.44 -23.09 2.64 -635.54 -1.68 -24.77 16 5 C -0.37 -21.66 9.39 84.04 0.79 -20.87 16 6 H 0.06 4.06 7.35 -2.91 -0.02 4.04 16 7 C 0.02 1.26 4.71 84.93 0.40 1.66 16 8 N -0.84 -41.40 9.19 21.66 0.20 -41.20 16 9 Si 0.96 41.92 29.66 68.60 2.03 43.96 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.42 22.75 6.80 87.66 0.60 23.35 16 14 O -0.64 -42.36 16.20 14.89 0.24 -42.12 16 15 C 0.07 2.75 2.82 30.35 0.09 2.84 16 16 H 0.11 3.65 5.62 -2.39 -0.01 3.64 16 17 C -0.14 -3.87 5.74 31.61 0.18 -3.69 16 18 C -0.12 -2.41 6.62 31.61 0.21 -2.20 16 19 C 0.04 1.02 3.71 30.35 0.11 1.13 16 20 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 21 C 0.52 14.46 7.34 87.66 0.64 15.11 16 22 N -0.82 -11.08 8.87 -173.53 -1.54 -12.62 16 23 O -0.59 -25.13 17.39 15.32 0.27 -24.86 16 24 O -0.37 -15.91 10.21 -121.42 -1.24 -17.15 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 2.64 6.60 -2.39 -0.02 2.62 16 29 H 0.04 1.49 6.07 -2.39 -0.01 1.48 16 30 H 0.08 2.47 5.14 -2.39 -0.01 2.46 16 31 H 0.08 3.57 5.90 -2.39 -0.01 3.56 16 32 H 0.28 12.59 8.31 -92.71 -0.77 11.82 16 33 H 0.05 1.82 7.87 -2.39 -0.02 1.81 16 34 H 0.13 2.45 6.82 -2.39 -0.02 2.44 16 35 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.54 7.87 -2.39 -0.02 1.52 16 37 H 0.41 4.83 8.93 -92.71 -0.83 4.00 16 38 H 0.42 1.77 8.83 -92.70 -0.82 0.95 16 Total: -1.00 -90.67 308.40 2.02 -88.65 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.54 Total: 14.82 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 4.27 Total: 15.30 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.02 Total: -78.58 kcal Atomic # 8 Polarization: -83.40 SS G_CDS: -0.73 Total: -84.14 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.96 kcal Total: -90.67 2.02 -88.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.120 kcal (2) G-P(sol) polarization free energy of solvation -90.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds