Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46917 * 2 1 4 4 N 1.46503 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99846 * 264.54857 * 4 3 2 6 6 H 1.07994 * 119.99944 * 143.61877 * 5 4 3 7 7 C 1.38943 * 119.99958 * 323.60949 * 5 4 3 8 8 N 1.31409 * 120.00440 * 340.00515 * 7 5 4 9 9 Si 1.86801 * 120.00042 * 160.00245 * 7 5 4 10 10 H 1.48500 * 109.47041 * 90.00159 * 9 7 5 11 11 H 1.48498 * 109.47355 * 210.00219 * 9 7 5 12 12 H 1.48500 * 109.46955 * 330.00343 * 9 7 5 13 13 C 1.34773 * 120.00152 * 84.54615 * 4 3 2 14 14 O 1.21300 * 119.99861 * 0.02562 * 13 4 3 15 15 C 1.50703 * 120.00130 * 180.02562 * 13 4 3 16 16 H 1.08995 * 110.33008 * 302.74887 * 15 13 4 17 17 C 1.54475 * 110.37313 * 65.00152 * 15 13 4 18 18 C 1.54508 * 104.06668 * 142.80720 * 17 15 13 19 19 C 1.54480 * 104.05904 * 0.02562 * 18 17 15 20 20 H 1.08995 * 110.37443 * 94.96239 * 19 18 17 21 21 C 1.50698 * 110.36881 * 217.18752 * 19 18 17 22 22 N 1.34781 * 120.00039 * 294.99975 * 21 19 18 23 23 O 1.21287 * 120.00036 * 115.27794 * 21 19 18 24 24 O 1.44420 * 104.80402 * 336.01943 * 19 18 17 25 25 H 1.08994 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46844 * 300.00011 * 1 2 3 27 27 H 1.09001 * 109.46989 * 59.99499 * 1 2 3 28 28 H 1.08998 * 109.47075 * 240.00363 * 2 1 3 29 29 H 1.09000 * 109.47136 * 119.99971 * 2 1 3 30 30 H 1.09004 * 109.47373 * 60.00313 * 3 2 1 31 31 H 1.09001 * 109.47700 * 300.00065 * 3 2 1 32 32 H 0.96999 * 120.00369 * 179.97438 * 8 7 5 33 33 H 1.09007 * 110.50851 * 24.15992 * 17 15 13 34 34 H 1.09003 * 110.51145 * 261.45904 * 17 15 13 35 35 H 1.08992 * 110.51213 * 241.35622 * 18 17 15 36 36 H 1.08998 * 110.62222 * 118.69965 * 18 17 15 37 37 H 0.96993 * 119.99748 * 359.97438 * 22 21 19 38 38 H 0.97006 * 119.99468 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5551 1.1811 6 1 5.1131 1.0116 1.3241 7 6 3.6999 2.3688 2.1946 8 7 2.8314 3.3146 1.9153 9 14 4.2740 2.1182 3.9544 10 1 5.4763 2.9527 4.2064 11 1 3.1911 2.5152 4.8898 12 1 4.6113 0.6876 4.1661 13 6 4.1784 1.3318 -1.1628 14 8 3.5715 1.2325 -2.2083 15 6 5.6855 1.3312 -1.1634 16 1 6.0647 2.2391 -0.6945 17 6 6.2231 0.0824 -0.4301 18 6 7.4726 -0.3221 -1.2440 19 6 7.5424 0.7306 -2.3723 20 1 8.2096 1.5451 -2.0906 21 6 8.0074 0.0932 -3.6563 22 7 9.2518 -0.4170 -3.7433 23 8 7.2635 0.0439 -4.6130 24 8 6.1881 1.2125 -2.5118 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.4882 3.8824 2.6230 33 1 5.4824 -0.7173 -0.4445 34 1 6.4986 0.3304 0.5949 35 1 7.3497 -1.3217 -1.6608 36 1 8.3670 -0.2756 -0.6228 37 1 9.8482 -0.3737 -2.9797 38 1 9.5511 -0.8270 -4.5700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276645808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = -143.984632 kcal Electronic energy + Delta-G solvation = -21709.460526 eV Core-core repulsion = 18357.942720 eV Total energy + Delta-G solvation = -3351.517806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52683 -40.39059 -38.93052 -36.94904 -34.85195 -34.60192 -33.48425 -32.73636 -30.82612 -27.64584 -26.80994 -25.00723 -22.92342 -22.45052 -21.55693 -20.95682 -19.30966 -18.44865 -18.10664 -17.46401 -17.30053 -16.72531 -16.27186 -15.97405 -15.64322 -15.37959 -15.32499 -15.10905 -14.65330 -14.45269 -14.05445 -13.44519 -13.30948 -13.05881 -12.97600 -12.69445 -12.61526 -12.49963 -12.22903 -12.02903 -11.96020 -11.72344 -11.52434 -11.23162 -10.94770 -10.75743 -10.69756 -10.24745 -9.47268 -8.26928 -6.04653 1.45748 1.52526 1.54545 1.65495 1.93344 2.08749 2.36245 2.75880 3.08017 3.32389 3.62005 3.88236 3.92215 4.07424 4.12340 4.17310 4.30721 4.36126 4.49350 4.56528 4.68401 4.78965 4.85665 4.95065 5.02488 5.06619 5.11732 5.19511 5.33246 5.48722 5.55263 5.71992 5.91247 6.00797 6.44594 6.46875 7.14296 7.33379 7.56903 8.02295 8.76433 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.006111 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.005594 B = 4580.926239 C = 5522.264005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.118 3.882 4 N -0.440 5.440 5 C -0.365 4.365 6 H 0.120 0.880 7 C 0.001 3.999 8 N -0.895 5.895 9 Si 0.985 3.015 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.451 3.549 14 O -0.635 6.635 15 C 0.078 3.922 16 H 0.099 0.901 17 C -0.129 4.129 18 C -0.127 4.127 19 C 0.040 3.960 20 H 0.131 0.869 21 C 0.520 3.480 22 N -0.820 5.820 23 O -0.588 6.588 24 O -0.370 6.370 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.021 0.979 32 H 0.272 0.728 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.423 0.577 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.366 -7.436 3.274 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.006 4.006 4 N -0.158 5.158 5 C -0.491 4.491 6 H 0.137 0.863 7 C -0.202 4.202 8 N -0.532 5.532 9 Si 0.808 3.192 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.241 3.759 14 O -0.523 6.523 15 C 0.017 3.983 16 H 0.117 0.883 17 C -0.167 4.167 18 C -0.165 4.165 19 C -0.021 4.021 20 H 0.149 0.851 21 C 0.305 3.695 22 N -0.387 5.387 23 O -0.467 6.467 24 O -0.288 6.288 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 12.233 -7.223 2.186 14.373 hybrid contribution 0.038 0.293 0.498 0.579 sum 12.270 -6.930 2.684 14.345 Atomic orbital electron populations 1.21612 0.93619 1.02408 1.01704 1.21727 0.97334 0.96797 1.00443 1.21407 0.81451 0.96292 1.01423 1.43631 1.05042 1.61996 1.05119 1.20225 1.10420 1.27618 0.90852 0.86290 1.26341 0.96746 0.92696 1.04396 1.70064 1.31715 1.16512 1.34923 0.85059 0.77932 0.79622 0.76571 1.19272 1.21374 1.17698 1.20871 0.90298 0.81223 0.83538 1.90527 1.71173 1.57143 1.33461 1.22613 0.91571 1.01165 0.82923 0.88318 1.22866 0.97352 0.95232 1.01211 1.22984 1.00128 0.98058 0.95295 1.23297 0.86454 0.98692 0.93666 0.85142 1.20541 0.82615 0.77635 0.88730 1.43415 1.13407 1.61552 1.20333 1.90776 1.56324 1.58805 1.40765 1.89344 1.26874 1.86864 1.25748 0.90780 0.92143 0.93392 0.94825 0.91823 0.88451 0.96050 0.91844 0.92528 0.86508 0.90430 0.84011 0.74435 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.91 71.98 0.71 -3.93 16 2 C -0.12 -5.33 6.22 30.59 0.19 -5.13 16 3 C 0.12 5.97 4.89 86.38 0.42 6.39 16 4 N -0.44 -22.69 2.54 -635.53 -1.62 -24.31 16 5 C -0.36 -17.28 8.44 84.04 0.71 -16.57 16 6 H 0.12 4.93 4.73 -2.91 -0.01 4.92 16 7 C 0.00 0.06 4.95 84.93 0.42 0.48 16 8 N -0.90 -46.45 11.37 21.66 0.25 -46.20 16 9 Si 0.99 36.13 29.60 68.60 2.03 38.16 16 10 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 11 H -0.29 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 13 C 0.45 24.12 6.93 87.66 0.61 24.73 16 14 O -0.64 -39.52 16.22 15.27 0.25 -39.27 16 15 C 0.08 3.28 2.93 30.35 0.09 3.37 16 16 H 0.10 3.96 8.05 -2.39 -0.02 3.94 16 17 C -0.13 -4.02 5.35 31.61 0.17 -3.85 16 18 C -0.13 -2.76 6.61 31.61 0.21 -2.55 16 19 C 0.04 1.12 3.71 30.35 0.11 1.23 16 20 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 21 C 0.52 15.02 7.35 87.66 0.64 15.67 16 22 N -0.82 -11.93 8.86 -173.52 -1.54 -13.47 16 23 O -0.59 -25.10 17.39 15.32 0.27 -24.83 16 24 O -0.37 -16.43 10.17 -121.26 -1.23 -17.67 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.10 5.09 5.45 -2.39 -0.01 5.07 16 31 H 0.02 1.17 7.59 -2.39 -0.02 1.15 16 32 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.06 2.01 7.87 -2.38 -0.02 1.99 16 34 H 0.12 3.07 6.47 -2.39 -0.02 3.05 16 35 H 0.08 1.70 7.86 -2.39 -0.02 1.68 16 36 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.42 2.41 8.83 -92.71 -0.82 1.59 16 38 H 0.41 5.10 8.93 -92.70 -0.83 4.27 16 Total: -1.00 -82.62 315.85 2.14 -80.47 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.55 Total: 27.30 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 4.29 Total: 19.82 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.91 Total: -83.98 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -0.72 Total: -81.77 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -82.62 2.14 -80.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.513 kcal (2) G-P(sol) polarization free energy of solvation -82.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds