Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 N 1.46504 * 109.47238 * 183.18922 * 3 2 1 5 5 C 1.37106 * 119.99595 * 263.45169 * 4 3 2 6 6 H 1.07998 * 119.99831 * 193.01809 * 5 4 3 7 7 C 1.38948 * 119.99804 * 13.01605 * 5 4 3 8 8 N 1.31411 * 120.00466 * 13.79472 * 7 5 4 9 9 Si 1.86802 * 119.99675 * 193.79719 * 7 5 4 10 10 H 1.48500 * 109.47147 * 89.99936 * 9 7 5 11 11 H 1.48503 * 109.47042 * 209.99757 * 9 7 5 12 12 H 1.48499 * 109.47306 * 330.00123 * 9 7 5 13 13 C 1.34777 * 120.00274 * 83.45077 * 4 3 2 14 14 O 1.21289 * 120.00122 * 4.75625 * 13 4 3 15 15 C 1.50699 * 119.99789 * 184.75513 * 13 4 3 16 16 H 1.09003 * 109.82390 * 47.53215 * 15 13 4 17 17 C 1.54380 * 109.90633 * 286.59350 * 15 13 4 18 18 C 1.55310 * 102.25102 * 219.08658 * 17 15 13 19 19 C 1.54939 * 100.94298 * 34.13635 * 18 17 15 20 20 H 1.09001 * 110.31342 * 82.46304 * 19 18 17 21 21 C 1.50699 * 110.31056 * 204.64056 * 19 18 17 22 22 N 1.34777 * 119.99952 * 292.16082 * 21 19 18 23 23 O 1.21280 * 120.00319 * 112.16237 * 21 19 18 24 24 O 1.43237 * 109.82834 * 168.41433 * 15 13 4 25 25 H 1.08999 * 109.47446 * 59.99752 * 1 2 3 26 26 H 1.09000 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47089 * 299.99626 * 1 2 3 28 28 H 1.09006 * 109.47089 * 240.00374 * 2 1 3 29 29 H 1.08999 * 109.47446 * 120.00248 * 2 1 3 30 30 H 1.08994 * 109.47350 * 63.18387 * 3 2 1 31 31 H 1.08998 * 109.47289 * 303.18316 * 3 2 1 32 32 H 0.96993 * 120.00006 * 179.97438 * 8 7 5 33 33 H 1.08991 * 110.85206 * 337.27938 * 17 15 13 34 34 H 1.09002 * 110.84554 * 100.89858 * 17 15 13 35 35 H 1.09002 * 111.12658 * 276.21151 * 18 17 15 36 36 H 1.08997 * 111.15706 * 152.06869 * 18 17 15 37 37 H 0.97004 * 119.99880 * 0.02562 * 22 21 19 38 38 H 0.96990 * 120.00074 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5030 1.4432 -0.0768 5 6 4.2494 1.5571 1.0676 6 1 5.3066 1.7685 1.0039 7 6 3.6457 1.4005 2.3092 8 7 2.4409 0.8825 2.3935 9 14 4.5467 1.9264 3.8587 10 1 4.2277 3.3453 4.1594 11 1 4.1184 1.0713 4.9948 12 1 6.0103 1.7810 3.6539 13 6 4.1151 1.3320 -1.2724 14 8 3.4575 1.3181 -2.2915 15 6 5.6166 1.2248 -1.3430 16 1 5.9684 0.4827 -0.6263 17 6 6.2565 2.5955 -1.0345 18 6 7.4368 2.6427 -2.0429 19 6 6.8251 1.8837 -3.2473 20 1 6.2091 2.5557 -3.8448 21 6 7.9160 1.2805 -4.0941 22 7 8.7484 2.0798 -4.7903 23 8 8.0449 0.0759 -4.1493 24 8 6.0152 0.8491 -2.6665 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7240 1.9396 0.9171 31 1 1.6308 1.9725 -0.8600 32 1 2.0197 0.7729 3.2603 33 1 5.5513 3.4045 -1.2246 34 1 6.6216 2.6309 -0.0081 35 1 8.3093 2.1199 -1.6512 36 1 7.6846 3.6698 -2.3107 37 1 8.6456 3.0434 -4.7460 38 1 9.4508 1.6917 -5.3350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276645811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -109.903642 kcal Electronic energy + Delta-G solvation = -21760.453340 eV Core-core repulsion = 18410.413397 eV Total energy + Delta-G solvation = -3350.039943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16739 -38.79962 -37.37063 -35.03243 -33.76459 -32.42986 -31.86187 -31.27770 -29.49134 -25.90536 -24.95449 -23.37385 -21.71410 -20.59344 -20.22176 -19.09723 -17.66421 -17.38109 -17.17290 -16.14131 -15.47532 -15.00294 -14.53059 -14.43980 -14.27376 -13.71122 -13.61473 -13.34910 -12.95425 -12.74218 -12.14348 -11.89095 -11.87203 -11.54460 -11.35340 -11.05633 -10.97444 -10.75527 -10.69681 -10.41946 -10.35971 -10.19666 -9.90464 -9.73662 -9.56074 -9.41417 -8.83250 -8.10945 -7.72702 -6.34054 -3.94462 2.65491 3.05322 3.15534 3.17691 3.22917 3.78258 4.01530 4.30371 4.57222 4.74914 4.83995 5.03355 5.14942 5.37935 5.51912 5.61817 5.74711 5.98659 6.06263 6.16804 6.21005 6.28718 6.45094 6.48276 6.70308 6.75423 6.93047 7.05844 7.12552 7.14354 7.27684 7.42408 7.53904 7.75824 7.84306 8.28505 8.43838 9.03878 9.52240 9.92731 10.59605 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.005995 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.088456 B = 4669.789088 C = 5688.058762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.140 3.860 4 N -0.438 5.438 5 C -0.335 4.335 6 H 0.100 0.900 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.444 3.556 14 O -0.594 6.594 15 C 0.079 3.921 16 H 0.101 0.899 17 C -0.133 4.133 18 C -0.145 4.145 19 C 0.062 3.938 20 H 0.095 0.905 21 C 0.519 3.481 22 N -0.856 5.856 23 O -0.522 6.522 24 O -0.328 6.328 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.400 0.600 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 6.830 -4.177 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.017 3.983 4 N -0.157 5.157 5 C -0.463 4.463 6 H 0.118 0.882 7 C -0.170 4.170 8 N -0.498 5.498 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.232 3.768 14 O -0.480 6.480 15 C 0.018 3.982 16 H 0.119 0.881 17 C -0.171 4.171 18 C -0.183 4.183 19 C 0.000 4.000 20 H 0.113 0.887 21 C 0.303 3.697 22 N -0.422 5.422 23 O -0.396 6.396 24 O -0.245 6.245 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.228 0.772 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.734 5.748 -4.494 10.632 hybrid contribution 0.672 0.700 0.809 1.263 sum 8.406 6.448 -3.685 11.217 Atomic orbital electron populations 1.21584 0.97667 0.99743 1.00339 1.21788 0.93646 0.98585 1.01748 1.21350 0.79501 0.96784 1.00637 1.43766 1.05887 1.61368 1.04724 1.19804 0.94413 1.48554 0.83520 0.88235 1.25254 0.96481 0.96066 0.99232 1.70085 1.14427 1.40180 1.25089 0.86014 0.79479 0.78606 0.81080 1.20361 1.20872 1.19549 1.20180 0.89134 0.83391 0.84141 1.90537 1.66392 1.56415 1.34617 1.22547 0.94238 0.97217 0.84201 0.88102 1.23046 0.96237 0.97369 1.00452 1.23272 0.99317 1.00883 0.94858 1.22779 0.91250 0.90481 0.95446 0.88730 1.20633 0.82351 0.87179 0.79549 1.43757 1.36200 1.10647 1.51622 1.90758 1.71232 1.14664 1.62971 1.88596 1.67693 1.39290 1.28944 0.94421 0.94326 0.93044 0.94970 0.88804 0.87798 0.95006 0.92136 0.89883 0.88632 0.89943 0.89348 0.77153 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 37.15 0.37 -2.29 16 2 C -0.12 -2.80 5.73 -26.73 -0.15 -2.96 16 3 C 0.14 3.44 4.55 -4.04 -0.02 3.42 16 4 N -0.44 -10.94 2.64 -114.81 -0.30 -11.24 16 5 C -0.34 -8.02 8.89 -14.93 -0.13 -8.15 16 6 H 0.10 2.18 4.80 -52.49 -0.25 1.93 16 7 C 0.03 0.80 5.13 -17.47 -0.09 0.71 16 8 N -0.86 -20.93 8.10 55.50 0.45 -20.48 16 9 Si 0.92 18.42 29.57 -169.99 -5.03 13.39 16 10 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 C 0.44 11.08 6.80 -10.99 -0.07 11.00 16 14 O -0.59 -16.63 16.22 -13.84 -0.22 -16.86 16 15 C 0.08 1.64 3.05 -27.16 -0.08 1.56 16 16 H 0.10 2.13 7.65 -51.93 -0.40 1.73 16 17 C -0.13 -2.13 5.59 -24.78 -0.14 -2.27 16 18 C -0.15 -1.81 6.56 -24.48 -0.16 -1.97 16 19 C 0.06 0.98 3.86 -26.86 -0.10 0.87 16 20 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 21 C 0.52 7.78 7.45 -10.99 -0.08 7.70 16 22 N -0.86 -7.67 8.87 31.22 0.28 -7.39 16 23 O -0.52 -10.49 17.39 -13.77 -0.24 -10.73 16 24 O -0.33 -7.10 9.84 -64.33 -0.63 -7.74 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 2.36 6.25 -51.93 -0.32 2.04 16 30 H 0.10 2.61 5.76 -51.93 -0.30 2.31 16 31 H 0.03 0.79 7.56 -51.93 -0.39 0.40 16 32 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 33 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 34 H 0.10 1.42 6.87 -51.93 -0.36 1.06 16 35 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 2.22 8.83 -40.82 -0.36 1.86 16 38 H 0.40 3.03 8.93 -40.82 -0.36 2.66 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -33.03 311.18 -6.92 -39.95 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.24 Total: 8.78 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.67 Total: 7.62 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.42 Total: -39.12 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.10 Total: -35.32 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.03 -6.92 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.949 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds