Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 N 1.46504 * 109.47238 * 183.18922 * 3 2 1 5 5 C 1.37106 * 119.99595 * 263.45169 * 4 3 2 6 6 H 1.07998 * 119.99831 * 193.01809 * 5 4 3 7 7 C 1.38948 * 119.99804 * 13.01605 * 5 4 3 8 8 N 1.31411 * 120.00466 * 13.79472 * 7 5 4 9 9 Si 1.86802 * 119.99675 * 193.79719 * 7 5 4 10 10 H 1.48500 * 109.47147 * 89.99936 * 9 7 5 11 11 H 1.48503 * 109.47042 * 209.99757 * 9 7 5 12 12 H 1.48499 * 109.47306 * 330.00123 * 9 7 5 13 13 C 1.34777 * 120.00274 * 83.45077 * 4 3 2 14 14 O 1.21289 * 120.00122 * 4.75625 * 13 4 3 15 15 C 1.50699 * 119.99789 * 184.75513 * 13 4 3 16 16 H 1.09003 * 109.82390 * 47.53215 * 15 13 4 17 17 C 1.54380 * 109.90633 * 286.59350 * 15 13 4 18 18 C 1.55310 * 102.25102 * 219.08658 * 17 15 13 19 19 C 1.54939 * 100.94298 * 34.13635 * 18 17 15 20 20 H 1.09001 * 110.31342 * 82.46304 * 19 18 17 21 21 C 1.50699 * 110.31056 * 204.64056 * 19 18 17 22 22 N 1.34777 * 119.99952 * 292.16082 * 21 19 18 23 23 O 1.21280 * 120.00319 * 112.16237 * 21 19 18 24 24 O 1.43237 * 109.82834 * 168.41433 * 15 13 4 25 25 H 1.08999 * 109.47446 * 59.99752 * 1 2 3 26 26 H 1.09000 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47089 * 299.99626 * 1 2 3 28 28 H 1.09006 * 109.47089 * 240.00374 * 2 1 3 29 29 H 1.08999 * 109.47446 * 120.00248 * 2 1 3 30 30 H 1.08994 * 109.47350 * 63.18387 * 3 2 1 31 31 H 1.08998 * 109.47289 * 303.18316 * 3 2 1 32 32 H 0.96993 * 120.00006 * 179.97438 * 8 7 5 33 33 H 1.08991 * 110.85206 * 337.27938 * 17 15 13 34 34 H 1.09002 * 110.84554 * 100.89858 * 17 15 13 35 35 H 1.09002 * 111.12658 * 276.21151 * 18 17 15 36 36 H 1.08997 * 111.15706 * 152.06869 * 18 17 15 37 37 H 0.97004 * 119.99880 * 0.02562 * 22 21 19 38 38 H 0.96990 * 120.00074 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5030 1.4432 -0.0768 5 6 4.2494 1.5571 1.0676 6 1 5.3066 1.7685 1.0039 7 6 3.6457 1.4005 2.3092 8 7 2.4409 0.8825 2.3935 9 14 4.5467 1.9264 3.8587 10 1 4.2277 3.3453 4.1594 11 1 4.1184 1.0713 4.9948 12 1 6.0103 1.7810 3.6539 13 6 4.1151 1.3320 -1.2724 14 8 3.4575 1.3181 -2.2915 15 6 5.6166 1.2248 -1.3430 16 1 5.9684 0.4827 -0.6263 17 6 6.2565 2.5955 -1.0345 18 6 7.4368 2.6427 -2.0429 19 6 6.8251 1.8837 -3.2473 20 1 6.2091 2.5557 -3.8448 21 6 7.9160 1.2805 -4.0941 22 7 8.7484 2.0798 -4.7903 23 8 8.0449 0.0759 -4.1493 24 8 6.0152 0.8491 -2.6665 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7240 1.9396 0.9171 31 1 1.6308 1.9725 -0.8600 32 1 2.0197 0.7729 3.2603 33 1 5.5513 3.4045 -1.2246 34 1 6.6216 2.6309 -0.0081 35 1 8.3093 2.1199 -1.6512 36 1 7.6846 3.6698 -2.3107 37 1 8.6456 3.0434 -4.7460 38 1 9.4508 1.6917 -5.3350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276645811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -133.952700 kcal Electronic energy + Delta-G solvation = -21761.496186 eV Core-core repulsion = 18410.413397 eV Total energy + Delta-G solvation = -3351.082789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57857 -40.37125 -38.92417 -36.97129 -34.84089 -34.21651 -33.52209 -32.82974 -30.90210 -27.65916 -26.69316 -24.87817 -23.01892 -22.28253 -21.56022 -20.92938 -19.05377 -18.82530 -18.46091 -17.71852 -16.82487 -16.56547 -16.24754 -15.94744 -15.67749 -15.40292 -15.35686 -14.97127 -14.41228 -14.18323 -13.84341 -13.58312 -13.19820 -13.04627 -12.86930 -12.61002 -12.59059 -12.48300 -12.19509 -12.11558 -11.97729 -11.82888 -11.44314 -11.35852 -10.81603 -10.74316 -10.70839 -9.96574 -9.65949 -8.16800 -5.84281 1.45456 1.50827 1.53776 1.63732 1.90926 2.17475 2.34813 2.85203 3.13176 3.21863 3.47859 3.84572 3.95391 4.07541 4.14028 4.34282 4.36585 4.47324 4.57958 4.68317 4.75406 4.78692 4.90132 4.93653 5.10404 5.13706 5.23623 5.30230 5.44457 5.58597 5.79282 5.83709 5.90589 5.96300 6.44328 6.55152 7.16439 7.31695 7.61863 8.02801 8.77693 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.005995 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.088456 B = 4669.789088 C = 5688.058762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.142 3.858 4 N -0.444 5.444 5 C -0.356 4.356 6 H 0.119 0.881 7 C -0.007 4.007 8 N -0.881 5.881 9 Si 0.992 3.008 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.257 1.257 13 C 0.426 3.574 14 O -0.638 6.638 15 C 0.081 3.919 16 H 0.091 0.909 17 C -0.127 4.127 18 C -0.124 4.124 19 C 0.047 3.953 20 H 0.106 0.894 21 C 0.521 3.479 22 N -0.821 5.821 23 O -0.584 6.584 24 O -0.370 6.370 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.004 0.996 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.018 0.982 32 H 0.270 0.730 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.422 0.578 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 8.774 -3.373 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.019 3.981 4 N -0.162 5.162 5 C -0.483 4.483 6 H 0.136 0.864 7 C -0.209 4.209 8 N -0.519 5.519 9 Si 0.816 3.184 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.181 1.181 13 C 0.215 3.785 14 O -0.528 6.528 15 C 0.020 3.980 16 H 0.109 0.891 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.014 4.014 20 H 0.123 0.877 21 C 0.306 3.694 22 N -0.388 5.388 23 O -0.463 6.463 24 O -0.288 6.288 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.023 0.977 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.254 0.746 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.674 7.760 -3.707 12.944 hybrid contribution 0.037 0.105 0.521 0.533 sum 9.710 7.865 -3.186 12.896 Atomic orbital electron populations 1.21498 0.94547 1.01295 1.01031 1.21652 0.96414 0.97350 0.99362 1.21312 0.80076 0.97156 0.99571 1.44022 1.06085 1.60678 1.05414 1.20285 0.95389 1.49287 0.83358 0.86384 1.26142 0.97283 0.95505 1.01939 1.70188 1.15632 1.40219 1.25887 0.84933 0.78943 0.77900 0.76648 1.19893 1.21483 1.18088 1.20989 0.91121 0.82924 0.83465 1.90480 1.67819 1.58548 1.35913 1.22441 0.91411 0.99819 0.84291 0.89129 1.23028 0.97155 0.93931 1.02379 1.23301 0.97691 1.03385 0.91762 1.23163 0.91401 0.89883 0.96930 0.87661 1.20575 0.82612 0.86600 0.79663 1.43425 1.34541 1.11397 1.49406 1.90738 1.73013 1.17217 1.65347 1.88547 1.68926 1.41999 1.29335 0.93667 0.92372 0.92318 0.97714 0.90483 0.88215 0.96315 0.91977 0.90391 0.87113 0.88911 0.84287 0.74610 0.75418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.91 71.98 0.71 -4.21 16 2 C -0.11 -5.30 5.73 30.59 0.18 -5.13 16 3 C 0.14 7.19 4.55 86.38 0.39 7.58 16 4 N -0.44 -22.75 2.64 -635.54 -1.68 -24.43 16 5 C -0.36 -17.02 8.89 84.04 0.75 -16.27 16 6 H 0.12 5.04 4.80 -2.91 -0.01 5.03 16 7 C -0.01 -0.31 5.13 84.93 0.44 0.13 16 8 N -0.88 -43.01 8.10 21.66 0.18 -42.83 16 9 Si 0.99 36.62 29.57 68.60 2.03 38.65 16 10 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 11 H -0.29 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 13 C 0.43 21.98 6.80 87.66 0.60 22.58 16 14 O -0.64 -37.45 16.22 15.48 0.25 -37.19 16 15 C 0.08 3.43 3.05 30.32 0.09 3.53 16 16 H 0.09 3.93 7.65 -2.39 -0.02 3.91 16 17 C -0.13 -3.82 5.59 31.86 0.18 -3.65 16 18 C -0.12 -2.66 6.56 32.05 0.21 -2.45 16 19 C 0.05 1.42 3.86 30.51 0.12 1.53 16 20 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 21 C 0.52 14.91 7.45 87.66 0.65 15.56 16 22 N -0.82 -12.19 8.87 -173.53 -1.54 -13.73 16 23 O -0.58 -23.64 17.39 15.45 0.27 -23.37 16 24 O -0.37 -16.37 9.84 -121.16 -1.19 -17.57 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.08 4.00 6.25 -2.39 -0.01 3.98 16 30 H 0.10 5.12 5.76 -2.39 -0.01 5.11 16 31 H 0.02 0.97 7.56 -2.39 -0.02 0.95 16 32 H 0.27 12.50 8.31 -92.71 -0.77 11.73 16 33 H 0.08 2.43 7.85 -2.39 -0.02 2.41 16 34 H 0.11 2.98 6.87 -2.39 -0.02 2.96 16 35 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 36 H 0.14 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.42 2.86 8.83 -92.71 -0.82 2.05 16 38 H 0.41 5.02 8.93 -92.72 -0.83 4.19 16 Total: -1.00 -76.24 311.18 2.08 -74.16 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.55 Total: 27.10 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 4.31 Total: 19.21 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.04 Total: -80.99 kcal Atomic # 8 Polarization: -77.46 SS G_CDS: -0.67 Total: -78.13 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -76.24 2.08 -74.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.789 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds