Wall clock time and date at job start Mon Mar 30 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00077 * 2 1 4 4 C 1.53001 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.52997 * 110.53717 * 62.16475 * 4 3 2 6 6 N 1.47314 * 110.59525 * 299.16852 * 4 3 2 7 7 C 1.34524 * 106.61872 * 241.25046 * 6 4 3 8 8 O 1.21541 * 123.77203 * 180.21097 * 7 6 4 9 9 N 1.33787 * 112.45722 * 0.38486 * 7 6 4 10 10 C 1.46505 * 124.17896 * 179.86294 * 9 7 6 11 11 C 1.52997 * 109.47212 * 269.69956 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47306 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47019 * 120.00329 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00104 * 17 15 13 21 21 C 1.34766 * 111.64454 * 359.59650 * 9 7 6 22 22 O 1.21235 * 127.15761 * 180.26908 * 21 9 7 23 23 H 1.08999 * 109.47604 * 300.00299 * 1 2 3 24 24 H 1.09002 * 109.47202 * 60.00532 * 1 2 3 25 25 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47358 * 59.99541 * 3 2 1 27 27 H 1.09005 * 109.46748 * 299.99329 * 3 2 1 28 28 H 1.08997 * 109.47055 * 182.83278 * 5 4 3 29 29 H 1.09005 * 109.46976 * 302.82943 * 5 4 3 30 30 H 1.08996 * 109.47263 * 62.83072 * 5 4 3 31 31 H 0.97001 * 126.68904 * 61.51189 * 6 4 3 32 32 H 1.09002 * 109.47068 * 29.70016 * 10 9 7 33 33 H 1.09001 * 109.47372 * 149.70103 * 10 9 7 34 34 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 36 36 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 37 37 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 38 38 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0171 0.4756 -1.2679 6 7 3.9994 0.4735 1.2032 7 6 4.7856 1.3316 1.8778 8 8 5.3393 1.0601 2.9252 9 7 4.8869 2.5187 1.2690 10 6 5.6755 3.6419 1.7817 11 6 4.7983 4.5104 2.6856 12 6 5.6219 5.6831 3.2216 13 6 4.7577 6.5388 4.1114 14 1 3.7244 6.2727 4.2784 15 6 5.2863 7.6610 4.7132 16 7 6.5448 7.9849 4.5103 17 14 4.2149 8.7222 5.8157 18 1 2.8475 8.1464 5.8797 19 1 4.7982 8.7643 7.1807 20 1 4.1473 10.0990 5.2635 21 6 4.1787 2.5516 0.1230 22 8 4.0777 3.4809 -0.6490 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 5.0995 0.3541 -1.2271 29 1 3.5440 -0.5039 -1.3384 30 1 3.7510 1.0713 -2.1410 31 1 3.7835 -0.4373 1.4576 32 1 6.5214 3.2608 2.3538 33 1 6.0412 4.2401 0.9471 34 1 3.9523 4.8915 2.1135 35 1 4.4325 3.9124 3.5203 36 1 6.4676 5.3016 3.7938 37 1 5.9879 6.2813 2.3872 38 1 6.9166 8.7746 4.9334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278001122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:16 Heat of formation + Delta-G solvation = -99.579469 kcal Electronic energy + Delta-G solvation = -21136.463828 eV Core-core repulsion = 17786.871574 eV Total energy + Delta-G solvation = -3349.592254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52949 -38.65628 -38.31843 -36.22239 -35.66721 -33.55709 -31.67838 -30.95978 -27.94356 -27.35815 -26.19042 -24.25681 -23.58195 -21.58931 -20.67153 -20.07540 -17.99927 -16.97542 -16.79033 -16.52472 -16.32790 -15.89386 -15.41481 -15.16688 -15.10212 -14.40980 -14.07737 -13.97908 -13.93496 -13.30445 -12.72012 -12.58871 -12.49685 -12.18230 -12.04389 -11.71529 -11.49816 -11.02581 -10.86568 -10.81743 -10.51802 -10.22896 -10.07186 -9.81752 -9.77176 -9.57590 -9.29954 -8.99973 -8.34748 -5.99626 -4.01799 1.55365 2.24578 2.95605 3.09712 3.32406 3.35179 3.39638 3.44071 3.89074 4.25206 4.43517 4.47125 4.92164 4.96569 5.03473 5.11361 5.15396 5.30218 5.33340 5.34350 5.36809 5.62666 5.72539 5.74345 5.76500 6.00548 6.51120 6.62026 6.73707 6.77801 7.00593 7.15563 7.38532 7.64795 7.77851 7.98899 8.19408 8.41428 9.04150 9.62099 11.11884 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004117 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.056797 B = 6800.259909 C = 7158.694373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.069 3.931 4 C 0.123 3.877 5 C -0.142 4.142 6 N -0.717 5.717 7 C 0.699 3.301 8 O -0.535 6.535 9 N -0.569 5.569 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.025 3.975 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.530 3.470 22 O -0.459 6.459 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.440 0.560 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -17.686 -12.741 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.009 4.009 4 C 0.031 3.969 5 C -0.200 4.200 6 N -0.382 5.382 7 C 0.400 3.600 8 O -0.408 6.408 9 N -0.315 5.315 10 C -0.005 4.005 11 C -0.162 4.162 12 C -0.013 4.013 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.315 3.685 22 O -0.328 6.328 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.285 0.715 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.716 -17.245 -12.512 23.020 hybrid contribution -0.867 0.505 0.791 1.278 sum -9.583 -16.740 -11.720 22.571 Atomic orbital electron populations 1.22790 0.80091 1.03062 1.00495 1.87792 1.20358 1.26575 1.95571 1.22574 0.89860 0.85913 1.02561 1.21427 0.94759 0.91369 0.89331 1.21930 1.02205 1.01811 0.94099 1.45591 1.51984 1.16776 1.23896 1.15967 0.80013 0.80570 0.83440 1.91028 1.50255 1.78341 1.21192 1.46614 1.46857 1.15048 1.22932 1.22137 0.94397 0.84573 0.99378 1.22008 0.98829 0.97844 0.97478 1.19037 0.95144 0.91015 0.96077 1.21219 0.97224 1.09007 1.28279 0.92669 1.25013 0.95028 0.97650 0.96729 1.69970 1.12893 1.26344 1.44183 0.86522 0.80663 0.80291 0.80445 1.19788 1.20968 1.20981 1.20465 0.78713 0.88483 0.80863 1.90810 1.59367 1.38237 1.44391 0.93692 0.93682 0.89243 0.91831 0.90523 0.91304 0.89615 0.89973 0.71548 0.88701 0.88970 0.92890 0.92557 0.96088 0.96186 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.25 10.06 -35.23 -0.35 -3.61 16 3 C 0.07 0.65 5.14 37.16 0.19 0.84 16 4 C 0.12 1.29 1.12 -132.10 -0.15 1.14 16 5 C -0.14 -1.15 8.89 37.16 0.33 -0.82 16 6 N -0.72 -8.08 5.82 -52.94 -0.31 -8.39 16 7 C 0.70 10.86 8.62 -88.03 -0.76 10.10 16 8 O -0.54 -10.23 17.48 5.33 0.09 -10.13 16 9 N -0.57 -9.04 2.60 -120.73 -0.31 -9.36 16 10 C 0.11 2.05 5.70 -4.04 -0.02 2.03 16 11 C -0.12 -2.64 5.48 -26.74 -0.15 -2.78 16 12 C 0.02 0.65 4.97 -27.89 -0.14 0.51 16 13 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.53 7.56 6.98 -10.56 -0.07 7.48 16 22 O -0.46 -7.55 17.76 5.60 0.10 -7.45 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.44 4.03 8.96 -40.82 -0.37 3.67 16 32 H 0.09 1.70 7.85 -51.93 -0.41 1.29 16 33 H 0.09 1.59 8.00 -51.93 -0.42 1.17 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -33.75 328.52 -5.97 -39.71 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.78 Total: -2.40 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.07 Total: 6.09 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.11 Total: -44.12 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.16 Total: -21.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.75 -5.97 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278001122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.867 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds