Wall clock time and date at job start Mon Mar 30 2020 00:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00077 * 2 1 4 4 C 1.53001 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.52997 * 110.53717 * 62.16475 * 4 3 2 6 6 N 1.47314 * 110.59525 * 299.16852 * 4 3 2 7 7 C 1.34524 * 106.61872 * 241.25046 * 6 4 3 8 8 O 1.21541 * 123.77203 * 180.21097 * 7 6 4 9 9 N 1.33787 * 112.45722 * 0.38486 * 7 6 4 10 10 C 1.46505 * 124.17896 * 179.86294 * 9 7 6 11 11 C 1.52997 * 109.47212 * 269.69956 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47306 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47019 * 120.00329 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00104 * 17 15 13 21 21 C 1.34766 * 111.64454 * 359.59650 * 9 7 6 22 22 O 1.21235 * 127.15761 * 180.26908 * 21 9 7 23 23 H 1.08999 * 109.47604 * 300.00299 * 1 2 3 24 24 H 1.09002 * 109.47202 * 60.00532 * 1 2 3 25 25 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47358 * 59.99541 * 3 2 1 27 27 H 1.09005 * 109.46748 * 299.99329 * 3 2 1 28 28 H 1.08997 * 109.47055 * 182.83278 * 5 4 3 29 29 H 1.09005 * 109.46976 * 302.82943 * 5 4 3 30 30 H 1.08996 * 109.47263 * 62.83072 * 5 4 3 31 31 H 0.97001 * 126.68904 * 61.51189 * 6 4 3 32 32 H 1.09002 * 109.47068 * 29.70016 * 10 9 7 33 33 H 1.09001 * 109.47372 * 149.70103 * 10 9 7 34 34 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 36 36 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 37 37 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 38 38 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0171 0.4756 -1.2679 6 7 3.9994 0.4735 1.2032 7 6 4.7856 1.3316 1.8778 8 8 5.3393 1.0601 2.9252 9 7 4.8869 2.5187 1.2690 10 6 5.6755 3.6419 1.7817 11 6 4.7983 4.5104 2.6856 12 6 5.6219 5.6831 3.2216 13 6 4.7577 6.5388 4.1114 14 1 3.7244 6.2727 4.2784 15 6 5.2863 7.6610 4.7132 16 7 6.5448 7.9849 4.5103 17 14 4.2149 8.7222 5.8157 18 1 2.8475 8.1464 5.8797 19 1 4.7982 8.7643 7.1807 20 1 4.1473 10.0990 5.2635 21 6 4.1787 2.5516 0.1230 22 8 4.0777 3.4809 -0.6490 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 5.0995 0.3541 -1.2271 29 1 3.5440 -0.5039 -1.3384 30 1 3.7510 1.0713 -2.1410 31 1 3.7835 -0.4373 1.4576 32 1 6.5214 3.2608 2.3538 33 1 6.0412 4.2401 0.9471 34 1 3.9523 4.8915 2.1135 35 1 4.4325 3.9124 3.5203 36 1 6.4676 5.3016 3.7938 37 1 5.9879 6.2813 2.3872 38 1 6.9166 8.7746 4.9334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278001122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:15 Heat of formation + Delta-G solvation = -124.145943 kcal Electronic energy + Delta-G solvation = -21137.529110 eV Core-core repulsion = 17786.871574 eV Total energy + Delta-G solvation = -3350.657536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.68943 -39.84762 -39.12585 -37.32628 -37.13902 -35.42280 -33.41057 -32.05709 -29.14993 -28.54257 -26.91629 -25.80331 -24.95521 -22.92763 -22.19178 -21.41955 -19.17022 -18.49649 -18.04940 -17.65175 -17.35262 -16.85711 -16.72786 -16.38332 -16.21943 -16.05430 -15.74370 -15.29749 -14.77188 -14.46405 -14.15324 -13.84068 -13.43454 -13.36015 -13.26370 -12.94081 -12.74074 -12.70715 -12.56071 -12.35514 -12.03980 -11.73210 -11.60979 -11.38300 -11.28747 -10.83217 -10.73176 -10.58216 -10.51964 -8.22436 -6.33570 0.40659 1.05866 1.38951 1.39464 1.52693 1.85384 1.98833 2.39556 2.50988 2.95821 3.10965 3.45048 3.67756 3.83241 4.09521 4.21643 4.28677 4.30751 4.35196 4.40625 4.57979 4.59422 4.67591 4.71522 4.85432 4.91859 4.97552 5.05637 5.14204 5.44574 5.63247 5.76262 5.79081 5.95810 6.02760 6.18730 6.24824 6.81108 7.02994 7.35359 8.89708 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004117 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.056797 B = 6800.259909 C = 7158.694373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.073 3.927 4 C 0.131 3.869 5 C -0.137 4.137 6 N -0.694 5.694 7 C 0.698 3.302 8 O -0.577 6.577 9 N -0.576 5.576 10 C 0.124 3.876 11 C -0.105 4.105 12 C 0.029 3.971 13 C -0.545 4.545 14 H 0.056 0.944 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.527 3.473 22 O -0.482 6.482 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.452 0.548 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.047 0.953 36 H -0.001 1.001 37 H 0.003 0.997 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -18.691 -13.563 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C -0.006 4.006 4 C 0.041 3.959 5 C -0.195 4.195 6 N -0.359 5.359 7 C 0.399 3.601 8 O -0.453 6.453 9 N -0.321 5.321 10 C 0.003 3.997 11 C -0.144 4.144 12 C -0.009 4.009 13 C -0.583 4.583 14 H 0.074 0.926 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.314 3.686 22 O -0.352 6.352 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.300 0.700 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.021 0.979 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.562 -18.299 -13.374 25.005 hybrid contribution -0.331 0.789 0.998 1.315 sum -10.893 -17.510 -12.375 24.050 Atomic orbital electron populations 1.22987 0.78711 1.04379 1.00962 1.87774 1.21753 1.25635 1.95642 1.22491 0.88620 0.86639 1.02804 1.21530 0.95578 0.88867 0.89955 1.21975 1.02359 1.02542 0.92603 1.45498 1.50270 1.16709 1.23439 1.16054 0.80201 0.80790 0.83086 1.91001 1.52163 1.79030 1.23072 1.46556 1.47130 1.14707 1.23709 1.21778 0.93794 0.85077 0.99030 1.21702 0.98473 0.96567 0.97642 1.18905 0.94795 0.92200 0.94987 1.21634 0.97660 1.09929 1.29116 0.92567 1.25957 0.96442 0.99047 0.98184 1.70089 1.14666 1.27056 1.45194 0.85386 0.78940 0.78351 0.78292 1.18849 1.20234 1.20047 1.21061 0.78063 0.89685 0.79778 1.90798 1.60018 1.39503 1.44873 0.93933 0.92540 0.87552 0.92971 0.89062 0.91305 0.87598 0.88958 0.70032 0.88966 0.88280 0.92985 0.93464 0.98253 0.97901 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.39 -5.46 10.06 -148.98 -1.50 -6.96 16 3 C 0.07 1.19 5.14 71.98 0.37 1.56 16 4 C 0.13 2.50 1.12 2.98 0.00 2.50 16 5 C -0.14 -1.80 8.89 71.98 0.64 -1.16 16 6 N -0.69 -14.49 5.82 -439.83 -2.56 -17.05 16 7 C 0.70 21.37 8.62 179.44 1.55 22.92 16 8 O -0.58 -22.22 17.48 -3.84 -0.07 -22.29 16 9 N -0.58 -18.19 2.60 -773.13 -2.01 -20.20 16 10 C 0.12 4.54 5.70 86.38 0.49 5.03 16 11 C -0.11 -4.63 5.48 30.59 0.17 -4.46 16 12 C 0.03 1.56 4.97 29.84 0.15 1.71 16 13 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.00 0.10 5.46 84.65 0.46 0.57 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 C 0.53 14.52 6.98 87.94 0.61 15.13 16 22 O -0.48 -15.45 17.76 -2.89 -0.05 -15.50 16 23 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 1.03 7.74 -2.38 -0.02 1.01 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.45 7.33 8.96 -92.71 -0.83 6.50 16 32 H 0.09 3.42 7.85 -2.39 -0.02 3.40 16 33 H 0.10 3.47 8.00 -2.39 -0.02 3.45 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.15 328.52 2.27 -70.88 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.23 Total: 7.38 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.93 Total: 13.53 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -4.29 Total: -94.18 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.62 Total: -44.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.15 2.27 -70.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278001122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.271 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds