Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12 18 18 C 1.46093 * 118.72810 * 269.73527 * 17 16 14 19 19 C 1.53213 * 109.82730 * 161.46470 * 18 17 16 20 20 O 1.43244 * 108.51365 * 49.53437 * 19 18 17 21 21 C 1.42967 * 112.98663 * 291.46222 * 20 19 18 22 22 C 1.33875 * 118.73246 * 89.98978 * 17 16 14 23 23 O 1.21283 * 118.83099 * 1.89584 * 22 17 16 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 33 33 H 1.09003 * 109.39352 * 281.77483 * 18 17 16 34 34 H 1.08999 * 109.39406 * 41.49651 * 18 17 16 35 35 H 1.09003 * 109.82088 * 289.74380 * 19 18 17 36 36 H 1.08992 * 109.67217 * 169.23611 * 19 18 17 37 37 H 1.08999 * 109.41422 * 289.49324 * 21 20 19 38 38 H 1.09007 * 109.35660 * 169.66806 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 7 4.1101 0.1747 4.1108 18 6 5.5471 0.2419 3.8560 19 6 6.1173 1.5411 4.4344 20 8 5.6647 1.6739 5.7870 21 6 4.2594 1.9180 5.8840 22 6 3.5095 0.9182 5.0482 23 8 2.3184 0.7799 5.2301 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 2.4483 -1.0888 3.9070 32 1 3.9016 -1.6021 3.0167 33 1 6.0378 -0.6122 4.3227 34 1 5.7256 0.2173 2.7810 35 1 5.7695 2.3910 3.8472 36 1 7.2064 1.5043 4.4152 37 1 4.0410 2.9246 5.5275 38 1 3.9478 1.8266 6.9246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279324206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -123.327020 kcal Electronic energy + Delta-G solvation = -21675.966396 eV Core-core repulsion = 18325.344371 eV Total energy + Delta-G solvation = -3350.622025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92027 -40.43977 -38.72756 -37.28485 -36.27645 -34.83647 -31.97522 -31.15268 -29.85729 -27.66502 -27.34051 -26.96879 -24.91206 -23.07366 -20.50682 -19.88200 -18.78554 -18.58044 -18.27872 -17.88038 -17.21252 -16.80581 -16.57440 -16.13367 -15.98838 -15.45508 -15.23617 -14.66674 -14.50876 -14.24974 -14.16392 -13.95745 -13.50125 -13.16567 -12.98138 -12.93250 -12.79174 -12.71147 -12.65430 -12.29925 -12.20172 -12.10842 -11.61714 -11.22361 -10.99738 -10.56631 -10.52788 -9.81029 -9.36698 -8.15624 -6.33068 1.28844 1.41945 1.42614 1.53189 1.70692 1.73780 2.33209 2.51519 2.74682 3.12364 3.27514 3.66697 3.78400 4.02458 4.12467 4.19273 4.25573 4.39743 4.44533 4.48899 4.65903 4.69887 4.76111 4.79360 4.83289 4.99767 5.02789 5.10222 5.42351 5.57055 5.64486 5.72482 5.99258 6.13056 6.23337 6.74890 6.75754 6.89952 7.28061 7.43835 8.89058 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.004766 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.619769 B = 5874.010378 C = 6164.741867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.535 4.535 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.281 1.281 10 H -0.259 1.259 11 H -0.283 1.283 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.479 3.521 15 O -0.599 6.599 16 C 0.100 3.900 17 N -0.589 5.589 18 C 0.077 3.923 19 C 0.043 3.957 20 O -0.372 6.372 21 C 0.059 3.941 22 C 0.480 3.520 23 O -0.587 6.587 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -5.595 14.063 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.023 0.977 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.207 1.207 10 H -0.183 1.183 11 H -0.208 1.208 12 N -0.331 5.331 13 C -0.063 4.063 14 C 0.267 3.733 15 O -0.481 6.481 16 C -0.026 4.026 17 N -0.320 5.320 18 C -0.045 4.045 19 C -0.034 4.034 20 O -0.290 6.290 21 C -0.020 4.020 22 C 0.269 3.731 23 O -0.468 6.468 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.773 -4.987 14.084 17.853 hybrid contribution -0.394 0.115 -1.570 1.623 sum 9.379 -4.872 12.514 16.380 Atomic orbital electron populations 1.21893 0.97558 1.00147 0.99612 1.18518 0.91379 0.92155 0.81958 0.97733 1.21554 1.31898 1.13073 0.90823 0.91660 1.25805 0.95031 0.95644 1.02239 1.70044 1.37368 1.24118 1.24442 0.85394 0.77711 0.79273 0.78255 1.20692 1.18275 1.20823 1.48258 1.48806 1.13611 1.22391 1.21874 1.02019 0.80245 1.02123 1.21774 0.78791 0.87206 0.85571 1.90596 1.60232 1.19339 1.77935 1.21487 0.98608 0.92790 0.89699 1.47292 1.09635 1.40897 1.34223 1.22497 0.77944 1.01352 1.02717 1.23224 1.02687 0.95327 0.82113 1.88155 1.21159 1.92666 1.26986 1.22832 0.80588 0.96361 1.02200 1.21717 0.88210 0.82126 0.81013 1.90704 1.17205 1.68228 1.70658 0.91327 0.93110 0.96910 0.92678 0.91461 0.89100 0.91199 0.86610 0.83739 0.87246 0.89919 0.92861 0.82998 0.88578 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 8.95 71.98 0.64 -6.08 16 2 C 0.26 13.95 2.64 44.24 0.12 14.07 16 3 H 0.00 0.30 6.90 -2.38 -0.02 0.28 16 4 C -0.54 -28.94 8.37 25.60 0.21 -28.72 16 5 H 0.07 3.36 7.65 -2.91 -0.02 3.34 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.65 11.32 21.45 0.24 -53.40 16 8 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.60 -25.71 2.75 -826.81 -2.28 -27.98 16 13 C 0.08 2.46 9.48 127.77 1.21 3.67 16 14 C 0.48 20.12 7.74 87.66 0.68 20.80 16 15 O -0.60 -30.91 15.76 -3.03 -0.05 -30.96 16 16 C 0.10 2.93 4.35 85.63 0.37 3.30 16 17 N -0.59 -16.58 2.32 -828.58 -1.92 -18.51 16 18 C 0.08 1.52 6.63 86.53 0.57 2.10 16 19 C 0.04 0.75 6.91 72.05 0.50 1.25 16 20 O -0.37 -7.42 10.85 -148.98 -1.62 -9.04 16 21 C 0.06 1.32 6.98 71.12 0.50 1.81 16 22 C 0.48 14.85 7.58 87.69 0.66 15.51 16 23 O -0.59 -22.83 16.36 -3.04 -0.05 -22.88 16 24 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 25 H 0.05 2.29 6.66 -2.39 -0.02 2.28 16 26 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.10 6.44 -2.38 -0.02 2.09 16 30 H 0.07 2.24 6.43 -2.39 -0.02 2.23 16 31 H 0.12 3.32 6.49 -2.38 -0.02 3.31 16 32 H 0.15 2.97 8.00 -2.39 -0.02 2.95 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 35 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.15 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -78.77 313.17 3.34 -75.44 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.06 Total: 13.89 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 5.92 Total: 28.82 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.96 Total: -99.90 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.71 Total: -62.87 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -78.77 3.34 -75.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279324206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.891 kcal (2) G-P(sol) polarization free energy of solvation -78.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds