Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21276 * 119.99959 * 359.97438 * 14 12 2 16 16 C 1.50704 * 120.00250 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.46995 * 179.97438 * 16 14 12 18 18 C 1.46091 * 118.73031 * 269.73259 * 17 16 14 19 19 C 1.53208 * 109.82115 * 161.46982 * 18 17 16 20 20 O 1.43242 * 108.51565 * 49.54279 * 19 18 17 21 21 C 1.42966 * 112.98570 * 291.45631 * 20 19 18 22 22 C 1.33878 * 118.72733 * 90.00608 * 17 16 14 23 23 O 1.21284 * 118.83111 * 1.88022 * 22 17 16 24 24 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 25 25 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 26 26 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 27 27 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 28 28 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 29 29 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 30 30 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 31 31 H 1.08998 * 109.47200 * 300.00174 * 16 14 12 32 32 H 1.09003 * 109.46884 * 60.00320 * 16 14 12 33 33 H 1.08998 * 109.39912 * 281.77977 * 18 17 16 34 34 H 1.09004 * 109.39101 * 41.50987 * 18 17 16 35 35 H 1.09006 * 109.83020 * 289.74782 * 19 18 17 36 36 H 1.09001 * 109.66873 * 169.24133 * 19 18 17 37 37 H 1.09003 * 109.41901 * 289.49140 * 21 20 19 38 38 H 1.08999 * 109.36060 * 169.66724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2957 -0.7460 -3.3138 17 7 4.1090 0.1751 -4.1115 18 6 3.4535 0.9813 -5.1385 19 6 4.3478 2.1659 -5.5183 20 8 5.6659 1.6733 -5.7862 21 6 6.3286 1.1870 -4.6165 22 6 5.4250 0.2415 -3.8749 23 8 5.9054 -0.4873 -3.0328 24 1 -0.3634 -1.0206 -0.1200 25 1 -0.3634 0.4065 0.9439 26 1 -0.3634 0.6142 -0.8239 27 1 1.9116 -1.9121 3.4375 28 1 0.7374 -2.1443 -1.9995 29 1 2.4627 -2.5818 -1.9866 30 1 1.5295 -2.5968 -0.4710 31 1 3.9014 -1.6022 -3.0169 32 1 2.4481 -1.0888 -3.9072 33 1 3.2690 0.3657 -6.0189 34 1 2.5044 1.3549 -4.7542 35 1 4.3845 2.8802 -4.6958 36 1 3.9517 2.6538 -6.4090 37 1 6.5843 2.0262 -3.9696 38 1 7.2393 0.6639 -4.9083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279324208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = -97.486038 kcal Electronic energy + Delta-G solvation = -21768.834241 eV Core-core repulsion = 18419.332765 eV Total energy + Delta-G solvation = -3349.501476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81280 -39.03093 -37.70206 -35.78175 -35.03672 -32.88513 -30.82267 -30.18860 -28.79731 -26.34525 -25.94186 -24.74399 -24.00508 -21.25073 -19.22037 -18.46605 -17.80471 -17.54726 -17.08210 -16.73092 -15.91156 -15.54913 -15.33008 -14.82096 -14.38468 -14.27081 -13.68354 -13.48546 -13.20551 -12.94524 -12.82354 -12.64255 -11.99560 -11.89334 -11.85259 -11.76258 -11.48672 -11.45473 -11.22266 -10.67661 -10.51491 -10.11787 -9.80943 -9.62488 -9.45095 -9.14982 -8.60046 -8.31116 -7.80902 -6.51208 -4.13060 2.44440 2.73214 3.17939 3.38249 3.48465 3.51286 3.62502 3.86346 4.20369 4.47210 4.57564 4.79597 4.94523 5.00487 5.07865 5.16913 5.21723 5.25843 5.36762 5.42716 5.53500 5.64987 5.86071 6.09121 6.24608 6.32914 6.39461 6.54898 6.57809 6.91390 7.12476 7.27294 7.41528 7.84101 8.02287 8.27055 8.33522 8.73376 8.91470 9.51990 10.84157 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.005181 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.432118 B = 5402.731670 C = 5534.332241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.236 3.764 3 H 0.053 0.947 4 C -0.617 4.617 5 H 0.062 0.938 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.585 5.585 13 C 0.082 3.918 14 C 0.491 3.509 15 O -0.549 6.549 16 C 0.091 3.909 17 N -0.587 5.587 18 C 0.084 3.916 19 C 0.044 3.956 20 O -0.374 6.374 21 C 0.053 3.947 22 C 0.491 3.509 23 O -0.536 6.536 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.270 0.730 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 2.403 -19.766 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 H 0.070 0.930 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.062 4.062 14 C 0.277 3.723 15 O -0.428 6.428 16 C -0.035 4.035 17 N -0.320 5.320 18 C -0.039 4.039 19 C -0.033 4.033 20 O -0.292 6.292 21 C -0.026 4.026 22 C 0.279 3.721 23 O -0.412 6.412 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.184 3.814 -18.263 18.694 hybrid contribution -0.017 -1.387 -0.777 1.590 sum 1.167 2.426 -19.040 19.229 Atomic orbital electron populations 1.22416 0.98620 1.00106 1.00066 1.19165 0.90307 0.94656 0.82469 0.92959 1.22097 1.41303 1.11195 0.90908 0.91956 1.25620 0.93245 1.05684 0.91829 1.70860 1.43552 1.06382 1.31782 0.84214 0.77541 0.76137 0.76152 1.20866 1.20619 1.20243 1.47972 1.49054 1.11708 1.22930 1.21659 0.98806 0.82916 1.02834 1.20795 0.79227 0.87521 0.84798 1.90617 1.58052 1.17238 1.76872 1.21458 0.96405 0.93608 0.92048 1.47026 1.07084 1.41917 1.35959 1.22178 0.97604 0.93275 0.90822 1.23043 0.82453 0.94815 1.02997 1.88145 1.28715 1.81227 1.31082 1.22815 0.95454 0.96739 0.87598 1.20942 0.82891 0.84514 0.83763 1.90772 1.74115 1.42393 1.33968 0.93471 0.91957 0.95692 0.92051 0.93589 0.92575 0.89757 0.86896 0.87963 0.90626 0.89463 0.91247 0.86720 0.88966 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.01 37.16 0.33 -3.00 16 2 C 0.24 5.79 2.23 -69.09 -0.15 5.64 16 3 H 0.05 1.42 5.48 -51.93 -0.28 1.13 16 4 C -0.62 -17.32 8.30 -34.45 -0.29 -17.60 16 5 H 0.06 1.87 7.38 -52.48 -0.39 1.48 16 6 C 0.04 1.25 5.20 -17.82 -0.09 1.16 16 7 N -0.89 -27.07 13.70 55.43 0.76 -26.31 16 8 Si 1.03 25.73 26.44 -169.99 -4.49 21.24 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.33 6.12 56.52 0.35 -5.99 16 12 N -0.59 -12.29 2.75 -175.26 -0.48 -12.77 16 13 C 0.08 1.34 9.10 59.85 0.54 1.89 16 14 C 0.49 10.00 7.74 -10.99 -0.08 9.91 16 15 O -0.55 -13.13 15.76 5.56 0.09 -13.04 16 16 C 0.09 1.38 4.35 -5.19 -0.02 1.36 16 17 N -0.59 -8.46 2.32 -175.67 -0.41 -8.86 16 18 C 0.08 0.86 6.63 -4.16 -0.03 0.84 16 19 C 0.04 0.40 6.91 37.27 0.26 0.66 16 20 O -0.37 -4.05 10.85 -35.23 -0.38 -4.44 16 21 C 0.05 0.62 6.98 35.83 0.25 0.87 16 22 C 0.49 7.81 7.58 -11.56 -0.09 7.72 16 23 O -0.54 -10.72 16.36 5.55 0.09 -10.63 16 24 H 0.05 0.95 7.46 -51.93 -0.39 0.56 16 25 H 0.06 1.41 5.44 -51.93 -0.28 1.13 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 30 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 31 H 0.11 1.78 6.50 -51.93 -0.34 1.44 16 32 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.89 8.13 -51.93 -0.42 0.46 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -36.30 309.94 -4.90 -41.20 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.37 Total: -0.49 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.63 Total: 9.45 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.13 Total: -47.95 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.20 Total: -28.11 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.49 Total: 21.24 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.30 -4.90 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279324208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.288 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds