Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21276 * 119.99959 * 359.97438 * 14 12 2 16 16 C 1.50704 * 120.00250 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.46995 * 179.97438 * 16 14 12 18 18 C 1.46091 * 118.73031 * 269.73259 * 17 16 14 19 19 C 1.53208 * 109.82115 * 161.46982 * 18 17 16 20 20 O 1.43242 * 108.51565 * 49.54279 * 19 18 17 21 21 C 1.42966 * 112.98570 * 291.45631 * 20 19 18 22 22 C 1.33878 * 118.72733 * 90.00608 * 17 16 14 23 23 O 1.21284 * 118.83111 * 1.88022 * 22 17 16 24 24 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 25 25 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 26 26 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 27 27 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 28 28 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 29 29 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 30 30 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 31 31 H 1.08998 * 109.47200 * 300.00174 * 16 14 12 32 32 H 1.09003 * 109.46884 * 60.00320 * 16 14 12 33 33 H 1.08998 * 109.39912 * 281.77977 * 18 17 16 34 34 H 1.09004 * 109.39101 * 41.50987 * 18 17 16 35 35 H 1.09006 * 109.83020 * 289.74782 * 19 18 17 36 36 H 1.09001 * 109.66873 * 169.24133 * 19 18 17 37 37 H 1.09003 * 109.41901 * 289.49140 * 21 20 19 38 38 H 1.08999 * 109.36060 * 169.66724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2957 -0.7460 -3.3138 17 7 4.1090 0.1751 -4.1115 18 6 3.4535 0.9813 -5.1385 19 6 4.3478 2.1659 -5.5183 20 8 5.6659 1.6733 -5.7862 21 6 6.3286 1.1870 -4.6165 22 6 5.4250 0.2415 -3.8749 23 8 5.9054 -0.4873 -3.0328 24 1 -0.3634 -1.0206 -0.1200 25 1 -0.3634 0.4065 0.9439 26 1 -0.3634 0.6142 -0.8239 27 1 1.9116 -1.9121 3.4375 28 1 0.7374 -2.1443 -1.9995 29 1 2.4627 -2.5818 -1.9866 30 1 1.5295 -2.5968 -0.4710 31 1 3.9014 -1.6022 -3.0169 32 1 2.4481 -1.0888 -3.9072 33 1 3.2690 0.3657 -6.0189 34 1 2.5044 1.3549 -4.7542 35 1 4.3845 2.8802 -4.6958 36 1 3.9517 2.6538 -6.4090 37 1 6.5843 2.0262 -3.9696 38 1 7.2393 0.6639 -4.9083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279324208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = -125.783896 kcal Electronic energy + Delta-G solvation = -21770.061328 eV Core-core repulsion = 18419.332765 eV Total energy + Delta-G solvation = -3350.728563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95937 -40.53496 -38.75429 -37.38700 -36.31589 -34.91661 -32.47492 -31.24542 -29.99166 -27.74497 -27.15185 -26.74632 -24.92033 -22.95513 -20.50887 -19.94577 -19.58485 -18.80170 -18.38855 -18.03337 -17.18103 -16.70637 -16.65680 -16.15916 -15.72750 -15.47370 -15.35757 -14.69060 -14.64982 -14.44187 -14.19715 -14.02352 -13.78738 -13.42078 -13.31534 -13.05753 -12.94723 -12.80937 -12.47082 -12.31210 -11.98027 -11.74387 -11.63535 -11.28351 -11.05543 -10.56908 -10.50135 -9.86883 -9.55554 -8.76567 -6.41811 1.25555 1.37689 1.46032 1.63537 1.65274 1.68641 2.34255 2.38959 2.73339 2.93465 3.25786 3.59073 3.76865 3.99386 4.10636 4.17530 4.21274 4.36517 4.39212 4.47430 4.48712 4.58797 4.69296 4.69607 4.76194 4.79632 4.91349 5.06633 5.11166 5.35786 5.65521 5.71480 5.79272 6.00136 6.20770 6.50927 6.64201 6.87445 7.19920 7.33660 8.54237 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.005181 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.432118 B = 5402.731670 C = 5534.332241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.235 3.765 3 H 0.027 0.973 4 C -0.617 4.617 5 H 0.029 0.971 6 C -0.002 4.002 7 N -0.922 5.922 8 Si 1.068 2.932 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.241 1.241 12 N -0.596 5.596 13 C 0.079 3.921 14 C 0.482 3.518 15 O -0.593 6.593 16 C 0.100 3.900 17 N -0.589 5.589 18 C 0.077 3.923 19 C 0.041 3.959 20 O -0.372 6.372 21 C 0.061 3.939 22 C 0.478 3.522 23 O -0.590 6.590 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.258 0.742 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 3.141 -22.839 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.131 3.869 3 H 0.045 0.955 4 C -0.654 4.654 5 H 0.047 0.953 6 C -0.203 4.203 7 N -0.556 5.556 8 Si 0.890 3.110 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.165 1.165 12 N -0.327 5.327 13 C -0.063 4.063 14 C 0.270 3.730 15 O -0.474 6.474 16 C -0.027 4.027 17 N -0.320 5.320 18 C -0.044 4.044 19 C -0.035 4.035 20 O -0.290 6.290 21 C -0.018 4.018 22 C 0.267 3.733 23 O -0.471 6.471 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.171 0.829 37 H 0.115 0.885 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.175 4.534 -21.399 21.874 hybrid contribution 0.428 -1.668 0.125 1.726 sum 0.253 2.867 -21.274 21.468 Atomic orbital electron populations 1.22222 0.95917 1.01493 1.00522 1.18907 0.92236 0.93075 0.82646 0.95540 1.22263 1.40348 1.09965 0.92868 0.95260 1.26790 0.92981 1.08742 0.91829 1.70956 1.46165 1.05889 1.32632 0.83747 0.78599 0.71810 0.76827 1.20393 1.21422 1.16497 1.48052 1.49312 1.13343 1.21982 1.21874 1.01762 0.80339 1.02349 1.21747 0.78092 0.87259 0.85928 1.90586 1.59364 1.19378 1.78122 1.21476 0.97843 0.92731 0.90613 1.47297 1.06816 1.41880 1.36034 1.22530 0.97477 0.93731 0.90689 1.23265 0.81666 0.94244 1.04344 1.88159 1.29493 1.81025 1.30344 1.22797 0.95211 0.96087 0.87751 1.21771 0.83815 0.84347 0.83330 1.90738 1.75275 1.44678 1.36444 0.92153 0.93091 0.93053 0.93276 0.89617 0.89853 0.92513 0.87588 0.82970 0.87316 0.89140 0.92676 0.82869 0.88537 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.01 71.98 0.65 -5.27 16 2 C 0.23 11.46 2.23 44.24 0.10 11.56 16 3 H 0.03 1.45 5.48 -2.39 -0.01 1.43 16 4 C -0.62 -35.42 8.30 25.60 0.21 -35.21 16 5 H 0.03 1.83 7.38 -2.91 -0.02 1.81 16 6 C 0.00 -0.13 5.20 84.65 0.44 0.32 16 7 N -0.92 -57.41 13.70 21.45 0.29 -57.11 16 8 Si 1.07 52.22 26.44 68.60 1.81 54.03 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.24 -10.36 6.12 99.48 0.61 -9.75 16 12 N -0.60 -24.42 2.75 -826.81 -2.28 -26.70 16 13 C 0.08 2.45 9.10 127.77 1.16 3.61 16 14 C 0.48 19.12 7.74 87.66 0.68 19.80 16 15 O -0.59 -28.36 15.76 -3.02 -0.05 -28.40 16 16 C 0.10 2.79 4.35 85.63 0.37 3.16 16 17 N -0.59 -15.75 2.32 -828.58 -1.92 -17.68 16 18 C 0.08 1.31 6.63 86.53 0.57 1.88 16 19 C 0.04 0.63 6.91 72.05 0.50 1.13 16 20 O -0.37 -7.05 10.85 -148.98 -1.62 -8.67 16 21 C 0.06 1.34 6.98 71.12 0.50 1.84 16 22 C 0.48 14.85 7.58 87.68 0.66 15.51 16 23 O -0.59 -24.00 16.36 -3.04 -0.05 -24.05 16 24 H 0.06 2.30 7.46 -2.39 -0.02 2.28 16 25 H 0.05 2.20 5.44 -2.39 -0.01 2.19 16 26 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.26 16.13 8.73 -92.72 -0.81 15.32 16 28 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.08 2.11 6.44 -2.39 -0.02 2.09 16 30 H 0.06 2.08 6.92 -2.39 -0.02 2.06 16 31 H 0.11 3.19 6.50 -2.39 -0.02 3.17 16 32 H 0.15 2.68 8.00 -2.39 -0.02 2.66 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.05 1.01 8.10 -2.38 -0.02 1.00 16 36 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -82.93 309.94 2.97 -79.96 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.93 Total: 10.28 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 5.85 Total: 18.33 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -3.91 Total: -101.49 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -1.71 Total: -61.13 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.81 Total: 54.03 kcal Total: -82.93 2.97 -79.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279324208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.819 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds