Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46655 * 2 1 4 4 N 1.46502 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99471 * 264.74759 * 4 3 2 6 6 H 1.08001 * 120.00000 * 146.17561 * 5 4 3 7 7 C 1.38954 * 120.00334 * 326.16706 * 5 4 3 8 8 N 1.31406 * 120.00093 * 337.67273 * 7 5 4 9 9 Si 1.86805 * 119.99911 * 157.66834 * 7 5 4 10 10 H 1.48497 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46961 * 120.00417 * 9 7 5 12 12 H 1.48500 * 109.46956 * 240.00322 * 9 7 5 13 13 C 1.34779 * 120.00404 * 84.74953 * 4 3 2 14 14 O 1.21292 * 119.99763 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99633 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46925 * 180.02562 * 15 13 4 17 17 C 1.46086 * 118.73208 * 269.73515 * 16 15 13 18 18 C 1.53210 * 109.82797 * 161.46447 * 17 16 15 19 19 O 1.43247 * 108.51037 * 49.54066 * 18 17 16 20 20 C 1.42969 * 112.98601 * 291.45820 * 19 18 17 21 21 C 1.33875 * 118.72902 * 90.00011 * 16 15 13 22 22 O 1.21283 * 118.83356 * 1.88382 * 21 16 15 23 23 H 1.09007 * 109.47221 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47216 * 299.99583 * 1 2 3 25 25 H 1.08999 * 109.47628 * 60.00330 * 1 2 3 26 26 H 1.08994 * 109.47458 * 240.00052 * 2 1 3 27 27 H 1.08996 * 109.47194 * 119.99383 * 2 1 3 28 28 H 1.08998 * 109.47634 * 59.99950 * 3 2 1 29 29 H 1.09001 * 109.47347 * 300.00111 * 3 2 1 30 30 H 0.96999 * 119.99951 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47357 * 300.00048 * 15 13 4 32 32 H 1.08997 * 109.47426 * 60.00360 * 15 13 4 33 33 H 1.09004 * 109.39504 * 281.77941 * 17 16 15 34 34 H 1.08994 * 109.39597 * 41.49534 * 17 16 15 35 35 H 1.08994 * 109.82854 * 289.74560 * 18 17 16 36 36 H 1.09000 * 109.67119 * 169.23685 * 18 17 16 37 37 H 1.09000 * 109.41283 * 289.49245 * 20 19 18 38 38 H 1.09006 * 109.35812 * 169.66994 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1907 1.5512 1.1815 6 1 5.1337 1.0400 1.3076 7 6 3.6728 2.3190 2.2173 8 7 2.8016 3.2683 1.9594 9 14 4.2149 2.0016 3.9766 10 1 5.1962 0.8873 3.9987 11 1 4.8458 3.2272 4.5289 12 1 3.0341 1.6384 4.8005 13 6 4.1784 1.3360 -1.1632 14 8 5.3913 1.3356 -1.1635 15 6 3.4243 1.2173 -2.4625 16 7 4.3759 1.1149 -3.5717 17 6 4.8285 2.3411 -4.2242 18 6 6.1180 2.0686 -5.0054 19 8 5.9205 0.9052 -5.8175 20 6 5.7987 -0.2960 -5.0518 21 6 4.7931 -0.0991 -3.9516 22 8 4.3436 -1.0748 -3.3886 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.6765 1.9564 0.8899 29 1 1.6765 1.9564 -0.8900 30 1 2.4398 3.8041 2.6826 31 1 2.7974 0.3260 -2.4387 32 1 2.7980 2.0985 -2.6010 33 1 4.0555 2.6944 -4.9068 34 1 5.0188 3.1038 -3.4693 35 1 6.9407 1.8953 -4.3119 36 1 6.3494 2.9233 -5.6411 37 1 6.7661 -0.5486 -4.6176 38 1 5.4704 -1.1071 -5.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279337586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -125.593287 kcal Electronic energy + Delta-G solvation = -21914.798889 eV Core-core repulsion = 18564.078591 eV Total energy + Delta-G solvation = -3350.720297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.83996 -40.25220 -38.69548 -37.27090 -36.23296 -34.57441 -33.06833 -31.35701 -30.28978 -27.95139 -27.02263 -25.85956 -24.80756 -22.54926 -21.27649 -19.97504 -18.92067 -18.72916 -18.18995 -17.86846 -17.08410 -16.71657 -16.40932 -16.12923 -15.65569 -15.47869 -15.43112 -15.08226 -14.54470 -14.36932 -14.15357 -13.96997 -13.45581 -13.36192 -13.09054 -12.86522 -12.77462 -12.64103 -12.35982 -12.22664 -12.10248 -12.02941 -11.58663 -11.55932 -10.94115 -10.78132 -10.49484 -9.73368 -9.50188 -8.38587 -6.07760 1.32001 1.34099 1.39606 1.52240 1.78600 1.96297 2.27290 2.73875 2.94522 3.08681 3.30459 3.77598 3.93426 4.02607 4.08130 4.17012 4.19427 4.28717 4.39056 4.42517 4.49217 4.58354 4.69350 4.72802 4.78405 4.95793 5.11496 5.11888 5.25595 5.36200 5.44047 5.56625 5.72875 6.15607 6.30245 6.48063 6.93402 7.13720 7.41581 8.00418 8.63204 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.005826 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.549608 B = 4805.190831 C = 5389.691636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.101 3.899 4 N -0.450 5.450 5 C -0.343 4.343 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.881 5.881 9 Si 0.977 3.023 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.261 1.261 13 C 0.431 3.569 14 O -0.624 6.624 15 C 0.105 3.895 16 N -0.585 5.585 17 C 0.076 3.924 18 C 0.047 3.953 19 O -0.371 6.371 20 C 0.062 3.938 21 C 0.477 3.523 22 O -0.590 6.590 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.276 0.724 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -0.206 -12.002 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C -0.022 4.022 4 N -0.168 5.168 5 C -0.471 4.471 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.519 5.519 9 Si 0.800 3.200 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.186 1.186 13 C 0.219 3.781 14 O -0.511 6.511 15 C -0.022 4.022 16 N -0.316 5.316 17 C -0.046 4.046 18 C -0.030 4.030 19 O -0.289 6.289 20 C -0.017 4.017 21 C 0.266 3.734 22 O -0.472 6.472 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.172 0.828 37 H 0.116 0.884 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.212 -0.515 -11.829 12.045 hybrid contribution 0.420 -0.042 1.620 1.674 sum -1.793 -0.557 -10.209 10.380 Atomic orbital electron populations 1.21617 0.92828 1.02382 1.02474 1.21887 0.97805 0.96930 1.00680 1.21810 0.79799 0.96423 1.04138 1.43787 1.06168 1.62393 1.04472 1.19337 1.06862 1.29905 0.91016 0.92574 1.25978 0.97071 0.92869 1.03465 1.69955 1.30947 1.16743 1.34212 0.85146 0.78658 0.78246 0.77900 1.20243 1.19949 1.18570 1.21518 0.88342 0.81648 0.86580 1.90443 1.16051 1.56989 1.87614 1.21329 0.91642 1.05084 0.84108 1.47251 1.44808 1.07369 1.32210 1.22474 0.99077 0.85806 0.97239 1.23200 0.94666 0.89993 0.95097 1.88140 1.93277 1.15105 1.32329 1.22822 0.97030 0.90113 0.91715 1.21783 0.83276 0.82599 0.85729 1.90687 1.58328 1.39960 1.58215 0.91500 0.92663 0.91244 0.93340 0.93965 0.88572 0.91339 0.91420 0.88160 0.85882 0.87639 0.90430 0.92732 0.82780 0.88413 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.13 -5.07 6.17 30.59 0.19 -4.88 16 3 C 0.10 4.40 4.72 86.38 0.41 4.81 16 4 N -0.45 -23.62 2.56 -635.53 -1.63 -25.25 16 5 C -0.34 -19.95 8.98 84.04 0.75 -19.19 16 6 H 0.06 3.57 7.70 -2.91 -0.02 3.55 16 7 C 0.01 0.49 4.92 84.93 0.42 0.91 16 8 N -0.88 -46.49 11.33 21.66 0.25 -46.24 16 9 Si 0.98 42.60 29.61 68.60 2.03 44.64 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 13 C 0.43 22.02 7.65 87.66 0.67 22.69 16 14 O -0.62 -36.68 16.25 -3.07 -0.05 -36.73 16 15 C 0.10 4.07 4.40 85.63 0.38 4.45 16 16 N -0.59 -20.39 2.32 -828.62 -1.92 -22.31 16 17 C 0.08 1.94 6.63 86.53 0.57 2.51 16 18 C 0.05 0.99 6.91 72.05 0.50 1.49 16 19 O -0.37 -8.53 10.85 -148.98 -1.62 -10.15 16 20 C 0.06 1.59 6.98 71.12 0.50 2.09 16 21 C 0.48 17.25 7.58 87.69 0.66 17.91 16 22 O -0.59 -26.20 16.36 -3.04 -0.05 -26.25 16 23 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.86 6.60 -2.39 -0.02 1.84 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.10 4.58 5.34 -2.39 -0.01 4.57 16 29 H 0.07 2.59 6.66 -2.39 -0.02 2.57 16 30 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.10 3.95 5.63 -2.39 -0.01 3.94 16 32 H 0.12 3.96 7.31 -2.39 -0.02 3.94 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 35 H 0.05 1.32 8.09 -2.39 -0.02 1.30 16 36 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.15 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -76.48 314.35 3.83 -72.65 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.06 Total: 19.97 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 5.76 Total: 29.68 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.30 Total: -93.80 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -1.72 Total: -73.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.64 kcal Total: -76.48 3.83 -72.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279337586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.946 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds