Wall clock time and date at job start Mon Mar 30 2020 01:23:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47236 * 2 1
4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1
5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1
6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2
7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2
8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3
9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3
10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5
11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5
12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5
13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1
14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2
15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3
16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3
17 17 N 1.46505 * 109.46744 * 179.97438 * 16 14 13
18 18 C 1.46093 * 118.73215 * 269.73225 * 17 16 14
19 19 C 1.53207 * 109.82333 * 161.47017 * 18 17 16
20 20 O 1.43243 * 108.51615 * 49.54260 * 19 18 17
21 21 C 1.42966 * 112.98651 * 291.45984 * 20 19 18
22 22 C 1.33876 * 118.72755 * 90.00405 * 17 16 14
23 23 O 1.21282 * 118.82857 * 1.88505 * 22 17 16
24 24 H 1.09000 * 109.47403 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3
26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3
27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3
28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3
29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5
30 30 H 0.97005 * 119.99239 * 94.99888 * 13 3 2
31 31 H 1.08995 * 109.47765 * 299.99977 * 16 14 13
32 32 H 1.09000 * 109.47068 * 60.00791 * 16 14 13
33 33 H 1.08996 * 109.39752 * 281.78678 * 18 17 16
34 34 H 1.09002 * 109.38992 * 41.50679 * 18 17 16
35 35 H 1.09005 * 109.82712 * 289.74821 * 19 18 17
36 36 H 1.08997 * 109.66930 * 169.24760 * 19 18 17
37 37 H 1.09000 * 109.41416 * 289.49407 * 21 20 19
38 38 H 1.08992 * 109.35785 * 169.66388 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1238
6 1 4.1472 1.8888 0.6523
7 6 4.1433 0.8782 -1.2279
8 7 3.4062 0.3372 -2.1732
9 14 6.0050 0.8798 -1.3810
10 1 6.5989 1.5440 -0.1930
11 1 6.4961 -0.5192 -1.4625
12 1 6.4001 1.6154 -2.6091
13 7 1.6525 2.0975 1.2518
14 6 0.4352 2.6644 1.3669
15 8 -0.3395 2.6320 0.4344
16 6 0.0364 3.3377 2.6548
17 7 -1.3221 3.8711 2.5266
18 6 -1.4972 5.2370 2.0388
19 6 -2.9355 5.4334 1.5490
20 8 -3.8299 4.9588 2.5622
21 6 -3.7828 3.5396 2.7284
22 6 -2.3549 3.0898 2.8662
23 8 -2.1304 1.9801 3.3010
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5139 0.8900
29 1 3.8292 -0.0607 -2.9502
30 1 2.2720 2.1231 1.9978
31 1 0.0673 2.6131 3.4684
32 1 0.7277 4.1530 2.8678
33 1 -1.2867 5.9392 2.8454
34 1 -0.8078 5.4179 1.2141
35 1 -3.0930 4.8702 0.6291
36 1 -3.1193 6.4920 1.3655
37 1 -4.2320 3.0581 1.8598
38 1 -4.3382 3.2621 3.6242
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000280359696.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:23:00
Heat of formation + Delta-G solvation = -135.729307 kcal
Electronic energy + Delta-G solvation = -21673.515568 eV
Core-core repulsion = 18322.355740 eV
Total energy + Delta-G solvation = -3351.159828 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.87692 -40.37547 -38.70792 -37.13135 -36.15679 -34.31297 -32.95648 -31.31169
-30.27015 -28.86000 -26.94373 -25.07087 -24.72306 -22.30691 -21.18335 -20.15426
-19.10558 -18.74308 -18.07777 -17.69877 -17.14549 -16.80289 -16.56653 -16.13671
-15.95574 -15.48061 -15.28321 -14.61618 -14.59673 -14.38293 -14.23036 -13.86736
-13.57925 -13.21132 -12.92091 -12.83631 -12.77534 -12.69392 -12.28632 -12.18492
-12.08262 -11.64429 -11.58750 -11.07231 -10.95625 -10.56821 -10.50766 -9.79642
-9.63564 -8.16833 -6.34358 1.32546 1.44022 1.45496 1.57068 1.74073
1.82356 2.37302 2.68688 2.79211 3.12897 3.30140 3.77459 4.00315
4.06612 4.16063 4.20885 4.37720 4.42055 4.43628 4.50471 4.50766
4.70420 4.72521 4.80973 5.02441 5.11613 5.20800 5.38827 5.52650
5.61806 5.73791 5.76001 5.90847 6.14357 6.25822 6.74309 6.88347
7.00495 7.33119 7.57049 8.88849
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.035052 B = 0.004504 C = 0.004328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.610229 B = 6214.688106 C = 6468.470031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.121 4.121
3 C 0.281 3.719
4 H -0.001 1.001
5 C -0.546 4.546
6 H 0.074 0.926
7 C 0.015 3.985
8 N -0.917 5.917
9 Si 0.971 3.029
10 H -0.259 1.259
11 H -0.281 1.281
12 H -0.283 1.283
13 N -0.705 5.705
14 C 0.483 3.517
15 O -0.581 6.581
16 C 0.095 3.905
17 N -0.587 5.587
18 C 0.078 3.922
19 C 0.043 3.957
20 O -0.373 6.373
21 C 0.059 3.941
22 C 0.480 3.520
23 O -0.585 6.585
24 H 0.039 0.961
25 H 0.037 0.963
26 H 0.025 0.975
27 H 0.072 0.928
28 H 0.037 0.963
29 H 0.264 0.736
30 H 0.404 0.596
31 H 0.112 0.888
32 H 0.146 0.854
33 H 0.106 0.894
34 H 0.086 0.914
35 H 0.054 0.946
36 H 0.151 0.849
37 H 0.096 0.904
38 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.820 11.484 10.476 17.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.160 4.160
3 C 0.177 3.823
4 H 0.017 0.983
5 C -0.584 4.584
6 H 0.092 0.908
7 C -0.185 4.185
8 N -0.555 5.555
9 Si 0.796 3.204
10 H -0.183 1.183
11 H -0.207 1.207
12 H -0.209 1.209
13 N -0.354 5.354
14 C 0.269 3.731
15 O -0.462 6.462
16 C -0.032 4.032
17 N -0.318 5.318
18 C -0.044 4.044
19 C -0.034 4.034
20 O -0.291 6.291
21 C -0.020 4.020
22 C 0.270 3.730
23 O -0.466 6.466
24 H 0.058 0.942
25 H 0.056 0.944
26 H 0.045 0.955
27 H 0.091 0.909
28 H 0.056 0.944
29 H 0.074 0.926
30 H 0.239 0.761
31 H 0.130 0.870
32 H 0.164 0.836
33 H 0.124 0.876
34 H 0.104 0.896
35 H 0.073 0.927
36 H 0.168 0.832
37 H 0.114 0.886
38 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -9.373 10.961 9.967 17.531
hybrid contribution 1.411 -0.652 -0.550 1.649
sum -7.961 10.309 9.417 16.073
Atomic orbital electron populations
1.21627 0.97357 0.98735 0.99867 1.21797 0.93309 0.99743 1.01119
1.18322 0.93709 0.88771 0.81456 0.98277 1.21613 0.91290 1.38822
1.06654 0.90788 1.25786 1.03346 0.94343 0.95039 1.70060 1.37061
1.38488 1.09927 0.85309 0.79068 0.77737 0.78285 1.18261 1.20731
1.20939 1.46237 1.15620 1.55961 1.17631 1.21605 0.81873 0.79030
0.90640 1.90633 1.52130 1.61101 1.42345 1.21464 0.85084 1.01698
0.94955 1.47231 1.05328 1.15398 1.63885 1.22481 0.99488 0.81086
1.01361 1.23228 0.86640 1.03503 0.90020 1.88155 1.62845 1.19924
1.58216 1.22819 0.90408 0.82646 1.06150 1.21665 0.89997 0.84787
0.76597 1.90716 1.86073 1.22030 1.47807 0.94173 0.94410 0.95545
0.90943 0.94413 0.92643 0.76082 0.87031 0.83650 0.87564 0.89561
0.92711 0.83162 0.88590 0.83393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.73 8.52 71.98 0.61 -5.12 16
2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16
3 C 0.28 14.39 2.24 44.24 0.10 14.49 16
4 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16
5 C -0.55 -28.50 8.73 25.60 0.22 -28.28 16
6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16
7 C 0.01 0.79 5.29 84.65 0.45 1.24 16
8 N -0.92 -52.46 11.29 21.45 0.24 -52.22 16
9 Si 0.97 41.65 29.54 68.60 2.03 43.68 16
10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16
12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
13 N -0.70 -28.62 5.02 -446.10 -2.24 -30.86 16
14 C 0.48 18.62 6.46 87.66 0.57 19.19 16
15 O -0.58 -27.05 13.56 -3.03 -0.04 -27.09 16
16 C 0.09 2.59 5.80 85.63 0.50 3.08 16
17 N -0.59 -15.57 2.32 -828.57 -1.92 -17.50 16
18 C 0.08 1.42 6.63 86.53 0.57 2.00 16
19 C 0.04 0.70 6.91 72.05 0.50 1.20 16
20 O -0.37 -7.23 10.85 -148.98 -1.62 -8.85 16
21 C 0.06 1.27 6.98 71.12 0.50 1.77 16
22 C 0.48 14.34 7.58 87.69 0.66 15.01 16
23 O -0.59 -22.25 16.36 -3.03 -0.05 -22.30 16
24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
25 H 0.04 1.83 5.64 -2.39 -0.01 1.81 16
26 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16
27 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16
28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16
30 H 0.40 13.71 8.54 -92.70 -0.79 12.92 16
31 H 0.11 3.11 7.23 -2.39 -0.02 3.10 16
32 H 0.15 2.70 8.03 -2.39 -0.02 2.68 16
33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16
34 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16
35 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16
36 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16
38 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16
Total: -1.00 -74.04 312.80 1.52 -72.52
By element:
Atomic # 1 Polarization: 23.76 SS G_CDS: 0.28 Total: 24.04 kcal
Atomic # 6 Polarization: 13.74 SS G_CDS: 4.85 Total: 18.58 kcal
Atomic # 7 Polarization: -96.66 SS G_CDS: -3.92 Total: -100.58 kcal
Atomic # 8 Polarization: -56.53 SS G_CDS: -1.71 Total: -58.24 kcal
Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal
Total: -74.04 1.52 -72.52 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000280359696.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.209 kcal
(2) G-P(sol) polarization free energy of solvation -74.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds