Wall clock time and date at job start Mon Mar 30 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 N 1.46509 * 109.47002 * 179.97438 * 16 14 13 18 18 C 1.46090 * 118.72857 * 269.73271 * 17 16 14 19 19 C 1.53203 * 109.82717 * 161.46600 * 18 17 16 20 20 O 1.43247 * 108.51368 * 49.53587 * 19 18 17 21 21 C 1.42966 * 112.98988 * 291.46073 * 20 19 18 22 22 C 1.33866 * 118.72723 * 89.99575 * 17 16 14 23 23 O 1.21282 * 118.84056 * 1.88693 * 22 17 16 24 24 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 32 32 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 33 33 H 1.08999 * 109.39446 * 281.78044 * 18 17 16 34 34 H 1.09004 * 109.39284 * 41.49553 * 18 17 16 35 35 H 1.09005 * 109.82600 * 289.75020 * 19 18 17 36 36 H 1.08991 * 109.67545 * 169.24155 * 19 18 17 37 37 H 1.08998 * 109.41745 * 289.49774 * 21 20 19 38 38 H 1.08996 * 109.36046 * 169.66283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 7 -1.3162 3.8853 -2.5209 18 6 -2.4452 3.0395 -2.9007 19 6 -3.7343 3.5818 -2.2753 20 8 -3.8189 4.9848 -2.5519 21 6 -2.8293 5.7509 -1.8607 22 6 -1.4733 5.1338 -2.0642 23 8 -0.4871 5.7907 -1.8058 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 0.7352 4.1620 -2.8606 32 1 0.0692 2.6266 -3.4666 33 1 -2.5415 3.0304 -3.9864 34 1 -2.2719 2.0236 -2.5456 35 1 -3.7177 3.4221 -1.1971 36 1 -4.5948 3.0713 -2.7074 37 1 -3.0631 5.7687 -0.7962 38 1 -2.8255 6.7697 -2.2479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280359698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:04 Heat of formation + Delta-G solvation = -110.536653 kcal Electronic energy + Delta-G solvation = -21642.555062 eV Core-core repulsion = 18292.487670 eV Total energy + Delta-G solvation = -3350.067393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75153 -38.83099 -37.66497 -35.57153 -34.72847 -32.40696 -31.15758 -30.32947 -29.03329 -27.11731 -25.70224 -23.96482 -22.98522 -20.61848 -19.38433 -19.07574 -17.76045 -17.47500 -16.92689 -16.15990 -15.63967 -15.45426 -15.26019 -14.70305 -14.54284 -14.23066 -13.86889 -13.52010 -13.18243 -12.90395 -12.69884 -12.48623 -11.86068 -11.73058 -11.48583 -11.27550 -11.26552 -11.00298 -10.82383 -10.64318 -10.34727 -10.20817 -9.68575 -9.57269 -9.37163 -9.06848 -8.56071 -8.46359 -7.84125 -6.12630 -4.22020 2.48587 2.77724 3.25797 3.31049 3.32146 3.36356 3.55380 4.13861 4.24727 4.39569 4.62125 4.85056 5.00040 5.12216 5.18620 5.28123 5.30219 5.41267 5.46516 5.56240 5.60817 6.16624 6.33236 6.38892 6.58708 6.60631 6.97973 7.15306 7.31375 7.33239 7.43258 7.60060 7.71276 7.89208 8.05911 8.16581 8.64973 8.77021 9.11301 9.45296 10.92729 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.004592 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.701431 B = 6096.397963 C = 6513.458432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.487 3.513 15 O -0.543 6.543 16 C 0.086 3.914 17 N -0.584 5.584 18 C 0.084 3.916 19 C 0.044 3.956 20 O -0.374 6.374 21 C 0.053 3.947 22 C 0.492 3.508 23 O -0.538 6.538 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 3.715 -11.355 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.271 3.729 15 O -0.422 6.422 16 C -0.041 4.041 17 N -0.317 5.317 18 C -0.039 4.039 19 C -0.033 4.033 20 O -0.292 6.292 21 C -0.026 4.026 22 C 0.280 3.720 23 O -0.416 6.416 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.149 4.014 -10.460 16.527 hybrid contribution 1.554 -0.343 -0.036 1.592 sum -10.595 3.671 -10.496 15.359 Atomic orbital electron populations 1.21815 0.98482 0.97871 1.01002 1.21928 0.92499 0.99855 1.02296 1.18766 0.94210 0.89052 0.80998 0.93452 1.21204 0.90717 1.39015 1.06355 0.92122 1.24882 0.98638 0.94785 0.95337 1.69882 1.35236 1.37593 1.09363 0.86508 0.84823 0.78350 0.77428 1.20157 1.21132 1.20158 1.46464 1.14604 1.55792 1.18633 1.20708 0.83180 0.79522 0.89515 1.90648 1.51568 1.59754 1.40211 1.21473 0.85053 1.00243 0.97314 1.46971 1.06589 1.13517 1.64598 1.22174 0.85778 0.95769 1.00161 1.23042 0.97342 0.81718 1.01195 1.88143 1.53489 1.18273 1.69331 1.22812 0.83592 0.96717 0.99521 1.20907 0.92652 0.81679 0.76797 1.90756 1.39991 1.60722 1.50101 0.93255 0.94546 0.95896 0.95032 0.88281 0.92521 0.77961 0.87087 0.88068 0.90709 0.89340 0.91222 0.86767 0.89035 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.01 16 5 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.45 5.02 -54.93 -0.28 -14.73 16 14 C 0.49 9.49 6.47 -10.99 -0.07 9.42 16 15 O -0.54 -12.42 13.58 5.55 0.08 -12.34 16 16 C 0.09 1.25 5.80 -5.19 -0.03 1.22 16 17 N -0.58 -8.25 2.32 -175.67 -0.41 -8.66 16 18 C 0.08 0.88 6.63 -4.16 -0.03 0.85 16 19 C 0.04 0.41 6.91 37.26 0.26 0.67 16 20 O -0.37 -4.08 10.85 -35.23 -0.38 -4.46 16 21 C 0.05 0.61 6.98 35.84 0.25 0.86 16 22 C 0.49 7.65 7.58 -11.56 -0.09 7.56 16 23 O -0.54 -10.45 16.36 5.56 0.09 -10.36 16 24 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 25 H 0.04 0.74 5.66 -51.93 -0.29 0.45 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 31 H 0.11 1.66 7.24 -51.93 -0.38 1.28 16 32 H 0.10 1.10 8.03 -51.93 -0.42 0.69 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 35 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -33.51 312.84 -6.13 -39.64 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.47 Total: 5.95 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.09 Total: 8.73 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.06 Total: -47.57 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.22 Total: -27.16 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.51 -6.13 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280359698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.893 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds