Wall clock time and date at job start Mon Mar 30 2020 01:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 N 1.46509 * 109.47002 * 179.97438 * 16 14 13 18 18 C 1.46090 * 118.72857 * 269.73271 * 17 16 14 19 19 C 1.53203 * 109.82717 * 161.46600 * 18 17 16 20 20 O 1.43247 * 108.51368 * 49.53587 * 19 18 17 21 21 C 1.42966 * 112.98988 * 291.46073 * 20 19 18 22 22 C 1.33866 * 118.72723 * 89.99575 * 17 16 14 23 23 O 1.21282 * 118.84056 * 1.88693 * 22 17 16 24 24 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 32 32 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 33 33 H 1.08999 * 109.39446 * 281.78044 * 18 17 16 34 34 H 1.09004 * 109.39284 * 41.49553 * 18 17 16 35 35 H 1.09005 * 109.82600 * 289.75020 * 19 18 17 36 36 H 1.08991 * 109.67545 * 169.24155 * 19 18 17 37 37 H 1.08998 * 109.41745 * 289.49774 * 21 20 19 38 38 H 1.08996 * 109.36046 * 169.66283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 7 -1.3162 3.8853 -2.5209 18 6 -2.4452 3.0395 -2.9007 19 6 -3.7343 3.5818 -2.2753 20 8 -3.8189 4.9848 -2.5519 21 6 -2.8293 5.7509 -1.8607 22 6 -1.4733 5.1338 -2.0642 23 8 -0.4871 5.7907 -1.8058 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 0.7352 4.1620 -2.8606 32 1 0.0692 2.6266 -3.4666 33 1 -2.5415 3.0304 -3.9864 34 1 -2.2719 2.0236 -2.5456 35 1 -3.7177 3.4221 -1.1971 36 1 -4.5948 3.0713 -2.7074 37 1 -3.0631 5.7687 -0.7962 38 1 -2.8255 6.7697 -2.2479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280359698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:03 Heat of formation + Delta-G solvation = -136.074158 kcal Electronic energy + Delta-G solvation = -21643.662452 eV Core-core repulsion = 18292.487670 eV Total energy + Delta-G solvation = -3351.174782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88194 -40.37838 -38.71813 -37.12133 -36.16380 -34.32061 -32.93352 -31.29830 -30.26801 -28.86454 -26.94548 -25.03341 -24.74176 -22.28224 -21.17790 -20.16081 -19.11113 -18.74701 -18.08442 -17.70868 -17.11136 -16.81190 -16.55599 -16.10334 -16.07082 -15.50559 -15.17149 -14.68103 -14.57283 -14.37652 -14.11047 -13.96415 -13.54316 -13.17915 -12.95208 -12.84455 -12.77732 -12.65542 -12.29030 -12.19436 -12.06231 -11.60859 -11.58215 -11.09528 -10.95697 -10.55993 -10.51143 -9.79245 -9.63886 -8.17742 -6.35254 1.31489 1.43199 1.45204 1.52730 1.73676 1.81781 2.36678 2.68285 2.78917 3.11645 3.29835 3.77647 3.99923 4.06763 4.15857 4.20761 4.38017 4.42384 4.48021 4.50864 4.57692 4.72093 4.75440 4.81606 5.04079 5.12505 5.25467 5.43235 5.55279 5.61030 5.73845 5.79207 5.92449 6.16571 6.25245 6.72874 6.87817 7.00185 7.32070 7.56731 8.87219 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.004592 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.701431 B = 6096.397963 C = 6513.458432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.010 1.010 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.262 1.262 13 N -0.704 5.704 14 C 0.483 3.517 15 O -0.581 6.581 16 C 0.095 3.905 17 N -0.586 5.586 18 C 0.078 3.922 19 C 0.042 3.958 20 O -0.373 6.373 21 C 0.060 3.940 22 C 0.479 3.521 23 O -0.589 6.589 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 3.306 -13.679 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.008 0.992 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.186 1.186 13 N -0.354 5.354 14 C 0.268 3.732 15 O -0.462 6.462 16 C -0.032 4.032 17 N -0.318 5.318 18 C -0.044 4.044 19 C -0.035 4.035 20 O -0.291 6.291 21 C -0.020 4.020 22 C 0.269 3.731 23 O -0.470 6.470 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.169 0.831 37 H 0.114 0.886 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.631 3.587 -12.841 18.366 hybrid contribution 1.632 -0.223 0.701 1.790 sum -10.999 3.364 -12.141 16.724 Atomic orbital electron populations 1.21636 0.96696 0.99139 1.00153 1.21753 0.94009 0.98741 1.01337 1.18329 0.93481 0.89320 0.81262 0.99215 1.21578 0.91609 1.38937 1.06789 0.91199 1.25759 1.03304 0.94361 0.94978 1.70041 1.37120 1.38325 1.09854 0.85443 0.79156 0.78316 0.77694 1.20026 1.21098 1.18646 1.46238 1.15639 1.55916 1.17628 1.21611 0.82129 0.78604 0.90833 1.90635 1.52559 1.60946 1.42078 1.21467 0.85628 1.00672 0.95433 1.47229 1.07375 1.13525 1.63644 1.22495 0.84726 0.95039 1.02135 1.23241 0.98351 0.81181 1.00682 1.88156 1.52790 1.19008 1.69165 1.22810 0.81660 0.97427 1.00054 1.21699 0.93587 0.81997 0.75857 1.90723 1.41774 1.62132 1.52354 0.96110 0.93319 0.93417 0.93717 0.91286 0.92610 0.76093 0.87299 0.83358 0.87518 0.89323 0.92707 0.83087 0.88598 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 8.52 71.98 0.61 -4.50 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 14.40 2.24 44.25 0.10 14.50 16 4 H -0.01 -0.63 7.57 -2.39 -0.02 -0.65 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.92 -52.80 11.29 21.45 0.24 -52.56 16 9 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 N -0.70 -28.70 5.02 -446.09 -2.24 -30.94 16 14 C 0.48 18.63 6.47 87.66 0.57 19.20 16 15 O -0.58 -27.07 13.58 -3.04 -0.04 -27.11 16 16 C 0.09 2.59 5.80 85.63 0.50 3.08 16 17 N -0.59 -15.55 2.32 -828.58 -1.92 -17.48 16 18 C 0.08 1.38 6.63 86.52 0.57 1.96 16 19 C 0.04 0.67 6.91 72.05 0.50 1.17 16 20 O -0.37 -7.21 10.85 -148.98 -1.62 -8.82 16 21 C 0.06 1.31 6.98 71.13 0.50 1.80 16 22 C 0.48 14.59 7.58 87.69 0.66 15.25 16 23 O -0.59 -23.13 16.36 -3.03 -0.05 -23.17 16 24 H 0.02 0.97 7.85 -2.39 -0.02 0.95 16 25 H 0.05 1.94 5.66 -2.39 -0.01 1.93 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 30 H 0.40 13.75 8.54 -92.71 -0.79 12.96 16 31 H 0.11 3.12 7.24 -2.39 -0.02 3.10 16 32 H 0.15 2.65 8.03 -2.39 -0.02 2.63 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.61 8.13 -2.38 -0.02 1.59 16 35 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 36 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -75.76 312.84 1.53 -74.23 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.28 Total: 22.38 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 4.85 Total: 18.92 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.92 Total: -100.97 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -1.71 Total: -59.11 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -75.76 1.53 -74.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280359698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.842 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds