Wall clock time and date at job start Mon Mar 30 2020 00:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48501 * 109.47507 * 30.00082 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.46090 * 118.73150 * 269.73105 * 16 15 13 18 18 C 1.53212 * 109.82368 * 161.46912 * 17 16 15 19 19 O 1.43244 * 108.51523 * 49.53969 * 18 17 16 20 20 C 1.42967 * 112.98866 * 291.46089 * 19 18 17 21 21 C 1.33875 * 118.72875 * 89.99927 * 16 15 13 22 22 O 1.21281 * 118.83234 * 1.88741 * 21 16 15 23 23 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 25 25 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 30 30 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09000 * 109.39695 * 281.78226 * 17 16 15 34 34 H 1.08997 * 109.39233 * 41.50373 * 17 16 15 35 35 H 1.08998 * 109.82662 * 289.74653 * 18 17 16 36 36 H 1.09001 * 109.66875 * 169.23971 * 18 17 16 37 37 H 1.09003 * 109.41084 * 289.49619 * 20 19 18 38 38 H 1.08991 * 109.35901 * 169.66659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1005 -0.0005 13 6 1.9832 -7.3712 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0007 16 7 2.2300 -9.7854 -0.0002 17 6 1.8845 -10.3963 1.2811 18 6 0.7628 -11.4209 1.0825 19 8 1.1227 -12.2848 -0.0019 20 6 1.1223 -11.6213 -1.2683 21 6 1.9079 -10.3429 -1.1739 22 8 2.2629 -9.7976 -2.1974 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8534 -5.0450 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 3.3861 -5.9233 -0.0016 31 1 3.5891 -8.4588 -0.8907 32 1 3.5892 -8.4590 0.8893 33 1 2.7630 -10.8917 1.6945 34 1 1.5481 -9.6230 1.9717 35 1 -0.1695 -10.9076 0.8472 36 1 0.6374 -12.0084 1.9920 37 1 0.0962 -11.3953 -1.5585 38 1 1.5758 -12.2709 -2.0168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280725819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:47 Heat of formation + Delta-G solvation = -120.476426 kcal Electronic energy + Delta-G solvation = -20350.932900 eV Core-core repulsion = 17000.434486 eV Total energy + Delta-G solvation = -3350.498414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07585 -39.28481 -37.93457 -35.83137 -35.19572 -33.35362 -31.44860 -30.63724 -29.42954 -27.13160 -25.81664 -24.23498 -23.00027 -20.83477 -20.26279 -19.32423 -18.03091 -17.48605 -17.24553 -16.41432 -16.11283 -15.81771 -15.47686 -15.24684 -14.72274 -14.53822 -14.33845 -14.04264 -13.74752 -13.44915 -13.29553 -12.33103 -12.30750 -12.10313 -11.86474 -11.72145 -11.61815 -10.91982 -10.89756 -10.76344 -10.61838 -10.17158 -9.89609 -9.77210 -9.50895 -9.17448 -8.94235 -8.83810 -8.39141 -6.03723 -4.07011 2.16562 2.44421 2.68056 3.29613 3.30326 3.35937 3.38395 3.45831 3.97310 4.35592 4.42647 4.60905 4.72595 4.79407 4.84685 4.99232 5.04613 5.15113 5.21070 5.32077 5.33449 5.66494 5.74019 5.84242 6.12433 6.36251 6.42685 6.56551 6.79017 6.97128 6.99206 7.60758 7.61207 7.73386 7.76161 7.94813 8.29923 8.36391 8.99671 9.57335 11.07610 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050784 B = 0.002771 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.227754 B =10101.746215 C =10179.993714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.723 5.723 13 C 0.493 3.507 14 O -0.539 6.539 15 C 0.089 3.911 16 N -0.587 5.587 17 C 0.083 3.917 18 C 0.043 3.957 19 O -0.372 6.372 20 C 0.053 3.947 21 C 0.493 3.507 22 O -0.538 6.538 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.399 0.601 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -24.106 3.588 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.375 5.375 13 C 0.277 3.723 14 O -0.416 6.416 15 C -0.038 4.038 16 N -0.320 5.320 17 C -0.040 4.040 18 C -0.034 4.034 19 O -0.290 6.290 20 C -0.027 4.027 21 C 0.281 3.719 22 O -0.415 6.415 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.233 0.767 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.767 -24.078 3.081 24.738 hybrid contribution 0.777 1.515 0.079 1.704 sum 5.544 -22.564 3.160 23.449 Atomic orbital electron populations 1.69967 1.06078 1.26720 1.50533 1.25036 0.94864 0.99338 0.95245 0.86572 0.79777 0.83378 0.78128 1.20630 1.21193 1.19887 1.21201 0.93000 0.90933 1.50987 0.92623 1.19028 0.93845 0.90869 0.97633 1.21893 0.99777 0.93280 1.00918 1.21647 0.91862 0.85084 1.01926 1.46175 1.10913 1.05802 1.74586 1.21014 0.90136 0.84449 0.76710 1.90685 1.16746 1.84739 1.49426 1.21399 0.94099 0.82397 1.05909 1.47018 1.56962 1.21607 1.06425 1.22225 0.99325 0.97020 0.85436 1.23057 0.96507 0.92323 0.91473 1.88170 1.90089 1.35760 1.15011 1.22823 1.00856 0.91345 0.87650 1.20996 0.80188 0.87494 0.83209 1.90758 1.53260 1.63743 1.33729 0.92904 0.96286 0.96315 0.92695 0.92650 0.91829 0.91807 0.76715 0.86511 0.87318 0.90373 0.89330 0.91229 0.86540 0.88881 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.72 -10.13 5.56 -60.30 -0.33 -10.46 16 13 C 0.49 7.15 7.89 -10.98 -0.09 7.06 16 14 O -0.54 -9.99 16.43 5.56 0.09 -9.90 16 15 C 0.09 0.92 5.80 -5.19 -0.03 0.89 16 16 N -0.59 -6.35 2.32 -175.67 -0.41 -6.76 16 17 C 0.08 0.62 6.63 -4.15 -0.03 0.59 16 18 C 0.04 0.30 6.91 37.27 0.26 0.56 16 19 O -0.37 -3.22 10.85 -35.23 -0.38 -3.61 16 20 C 0.05 0.48 6.98 35.83 0.25 0.73 16 21 C 0.49 6.17 7.58 -11.56 -0.09 6.08 16 22 O -0.54 -8.70 16.36 5.56 0.09 -8.61 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 31 H 0.12 1.23 7.24 -51.93 -0.38 0.86 16 32 H 0.11 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -36.24 325.37 -6.51 -42.75 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.75 Total: -1.18 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.44 Total: 2.53 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.01 Total: -43.36 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.20 Total: -22.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.24 -6.51 -42.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280725819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.724 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds