Wall clock time and date at job start Mon Mar 30 2020 00:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48501 * 109.47507 * 30.00082 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.46090 * 118.73150 * 269.73105 * 16 15 13 18 18 C 1.53212 * 109.82368 * 161.46912 * 17 16 15 19 19 O 1.43244 * 108.51523 * 49.53969 * 18 17 16 20 20 C 1.42967 * 112.98866 * 291.46089 * 19 18 17 21 21 C 1.33875 * 118.72875 * 89.99927 * 16 15 13 22 22 O 1.21281 * 118.83234 * 1.88741 * 21 16 15 23 23 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 25 25 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 30 30 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09000 * 109.39695 * 281.78226 * 17 16 15 34 34 H 1.08997 * 109.39233 * 41.50373 * 17 16 15 35 35 H 1.08998 * 109.82662 * 289.74653 * 18 17 16 36 36 H 1.09001 * 109.66875 * 169.23971 * 18 17 16 37 37 H 1.09003 * 109.41084 * 289.49619 * 20 19 18 38 38 H 1.08991 * 109.35901 * 169.66659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1005 -0.0005 13 6 1.9832 -7.3712 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0007 16 7 2.2300 -9.7854 -0.0002 17 6 1.8845 -10.3963 1.2811 18 6 0.7628 -11.4209 1.0825 19 8 1.1227 -12.2848 -0.0019 20 6 1.1223 -11.6213 -1.2683 21 6 1.9079 -10.3429 -1.1739 22 8 2.2629 -9.7976 -2.1974 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8534 -5.0450 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 3.3861 -5.9233 -0.0016 31 1 3.5891 -8.4588 -0.8907 32 1 3.5892 -8.4590 0.8893 33 1 2.7630 -10.8917 1.6945 34 1 1.5481 -9.6230 1.9717 35 1 -0.1695 -10.9076 0.8472 36 1 0.6374 -12.0084 1.9920 37 1 0.0962 -11.3953 -1.5585 38 1 1.5758 -12.2709 -2.0168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280725819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:46 Heat of formation + Delta-G solvation = -148.357167 kcal Electronic energy + Delta-G solvation = -20352.141900 eV Core-core repulsion = 17000.434486 eV Total energy + Delta-G solvation = -3351.707413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94471 -40.43236 -38.74940 -37.11360 -36.30939 -35.22064 -33.16197 -31.39104 -30.41127 -28.61821 -26.96782 -25.07576 -24.61366 -22.35784 -21.63498 -20.15400 -18.78906 -18.67567 -18.35567 -18.12800 -16.99984 -16.83872 -16.67720 -16.40562 -16.30215 -15.64042 -15.49976 -15.16897 -14.68512 -14.43613 -14.25339 -14.03621 -13.78040 -13.66641 -13.00888 -12.80702 -12.74719 -12.57547 -12.39769 -12.31713 -11.71470 -11.70260 -11.57579 -11.29097 -11.13132 -10.57366 -10.56505 -10.15577 -9.89445 -8.21304 -6.33126 1.24555 1.40898 1.42288 1.53270 1.53947 1.65922 2.28157 2.42023 2.74303 3.12524 3.26325 3.69758 3.79946 4.02257 4.12022 4.14598 4.17914 4.19314 4.34086 4.40042 4.48129 4.51361 4.70741 4.80118 4.90637 4.94211 5.08597 5.14255 5.38950 5.50117 5.67723 5.72496 5.81937 6.18909 6.19935 6.50182 6.84454 6.86183 7.18502 7.36778 8.90940 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050784 B = 0.002771 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.227754 B =10101.746215 C =10179.993714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.132 3.868 12 N -0.712 5.712 13 C 0.489 3.511 14 O -0.585 6.585 15 C 0.094 3.906 16 N -0.590 5.590 17 C 0.077 3.923 18 C 0.040 3.960 19 O -0.375 6.375 20 C 0.057 3.943 21 C 0.482 3.518 22 O -0.585 6.585 23 H 0.263 0.737 24 H -0.012 1.012 25 H -0.007 1.007 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.418 0.582 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 -24.900 4.742 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.365 5.365 13 C 0.276 3.724 14 O -0.465 6.465 15 C -0.033 4.033 16 N -0.321 5.321 17 C -0.044 4.044 18 C -0.037 4.037 19 O -0.293 6.293 20 C -0.022 4.022 21 C 0.271 3.729 22 O -0.466 6.466 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.012 0.988 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.255 0.745 31 H 0.136 0.864 32 H 0.174 0.826 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.115 0.885 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.065 -24.899 4.275 26.233 hybrid contribution 0.025 1.733 -0.239 1.749 sum 7.091 -23.167 4.036 24.561 Atomic orbital electron populations 1.70115 1.07998 1.27838 1.51684 1.26046 0.95754 1.03642 0.94734 0.85398 0.78732 0.78180 0.78434 1.19937 1.20978 1.18255 1.21688 0.93796 0.91978 1.50492 0.91429 1.18943 0.94455 0.93088 0.94944 1.21598 0.98413 0.91655 1.02250 1.21194 0.92002 0.85728 1.00338 1.45944 1.11327 1.04927 1.74262 1.21827 0.90273 0.85157 0.75178 1.90668 1.19003 1.85377 1.51406 1.21522 0.93037 0.80524 1.08174 1.47264 1.56214 1.21400 1.07234 1.22509 1.00742 0.97269 0.83917 1.23258 0.95716 0.92566 0.92132 1.88173 1.90084 1.35992 1.15069 1.22831 1.00613 0.90282 0.88499 1.21653 0.79855 0.88334 0.83081 1.90724 1.55290 1.65265 1.35350 0.92790 0.99352 0.98845 0.90843 0.91586 0.94189 0.92918 0.74486 0.86420 0.82588 0.87487 0.88983 0.92557 0.83302 0.88471 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 11 C 0.13 4.67 5.67 86.38 0.49 5.16 16 12 N -0.71 -19.03 5.56 -463.06 -2.57 -21.61 16 13 C 0.49 13.74 7.89 87.66 0.69 14.43 16 14 O -0.58 -21.85 16.43 -3.03 -0.05 -21.90 16 15 C 0.09 1.75 5.80 85.63 0.50 2.24 16 16 N -0.59 -11.77 2.32 -828.59 -1.92 -13.69 16 17 C 0.08 0.95 6.63 86.53 0.57 1.52 16 18 C 0.04 0.46 6.91 72.05 0.50 0.96 16 19 O -0.38 -5.78 10.85 -148.98 -1.62 -7.40 16 20 C 0.06 0.99 6.98 71.12 0.50 1.48 16 21 C 0.48 11.78 7.58 87.69 0.66 12.44 16 22 O -0.59 -19.12 16.36 -3.03 -0.05 -19.17 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.42 8.01 8.47 -92.71 -0.79 7.23 16 31 H 0.12 2.27 7.24 -2.39 -0.02 2.26 16 32 H 0.16 1.41 8.03 -2.39 -0.02 1.39 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.10 8.13 -2.39 -0.02 1.08 16 35 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 36 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -80.85 325.37 1.29 -79.56 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.27 Total: 9.49 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.92 Total: 6.08 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.21 Total: -92.46 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -1.72 Total: -48.47 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.85 1.29 -79.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280725819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.798 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds