Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.33487 * 2 1 4 4 C 1.54480 * 110.37274 * 122.25693 * 2 1 3 5 5 C 1.54509 * 104.06409 * 142.80742 * 4 2 1 6 6 C 1.54477 * 104.06373 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.37361 * 94.96426 * 6 5 4 8 8 C 1.50703 * 110.37302 * 217.19417 * 6 5 4 9 9 O 1.21274 * 120.00307 * 113.44909 * 8 6 5 10 10 N 1.34774 * 119.99808 * 293.44803 * 8 6 5 11 11 N 1.40097 * 120.00136 * 179.97438 * 10 8 6 12 12 C 1.34784 * 120.00130 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 O 1.44433 * 104.89932 * 336.07489 * 6 5 4 25 25 H 1.08999 * 109.46982 * 297.74922 * 1 2 3 26 26 H 1.09007 * 109.47195 * 57.74395 * 1 2 3 27 27 H 1.08996 * 109.47582 * 177.74805 * 1 2 3 28 28 H 1.08995 * 110.50909 * 24.15756 * 4 2 1 29 29 H 1.08997 * 110.50562 * 261.45187 * 4 2 1 30 30 H 1.08996 * 110.50747 * 241.35275 * 5 4 2 31 31 H 1.08995 * 110.51051 * 118.64386 * 5 4 2 32 32 H 0.97005 * 119.99841 * 359.97438 * 10 8 6 33 33 H 0.96991 * 120.00229 * 0.02562 * 11 10 8 34 34 H 1.09002 * 109.47054 * 60.00213 * 14 12 11 35 35 H 1.08998 * 109.47224 * 299.99701 * 14 12 11 36 36 H 1.09007 * 109.46922 * 59.99702 * 15 14 12 37 37 H 1.09003 * 109.46836 * 300.00457 * 15 14 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3178 -1.5051 0.6873 6 6 3.3870 -1.0885 -0.7986 7 1 4.0535 -0.2351 -0.9228 8 6 3.8525 -2.2443 -1.6464 9 8 3.0978 -2.7496 -2.4500 10 7 5.1077 -2.7163 -1.5115 11 7 5.5403 -3.7910 -2.2992 12 6 6.7957 -4.2627 -2.1646 13 8 7.5506 -3.7570 -1.3613 14 6 7.2613 -5.4184 -3.0123 15 6 8.7132 -5.7534 -2.6649 16 6 9.1785 -6.9095 -3.5122 17 1 8.5062 -7.3600 -4.2273 18 6 10.4628 -7.3921 -3.3744 19 7 11.2817 -6.8431 -2.5040 20 14 11.0394 -8.8256 -4.4242 21 1 10.7503 -10.1015 -3.7215 22 1 10.3252 -8.8046 -5.7260 23 1 12.5011 -8.7102 -4.6596 24 8 2.0332 -0.7239 -1.1456 25 1 -0.3633 0.4785 0.9095 26 1 -0.3634 0.5485 -0.8691 27 1 -0.3634 -1.0268 -0.0404 28 1 1.3275 -1.4903 1.5786 29 1 2.3430 -0.0820 2.0215 30 1 3.1954 -2.5846 0.7756 31 1 4.2109 -1.1762 1.2185 32 1 5.7115 -2.3118 -0.8690 33 1 4.9367 -4.1952 -2.9419 34 1 7.1936 -5.1467 -4.0658 35 1 6.6316 -6.2870 -2.8198 36 1 8.7813 -6.0248 -1.6114 37 1 9.3426 -4.8846 -2.8577 38 1 12.1851 -7.1829 -2.4069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294203784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -99.635421 kcal Electronic energy + Delta-G solvation = -20128.020292 eV Core-core repulsion = 16778.425612 eV Total energy + Delta-G solvation = -3349.594680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72958 -39.54706 -38.35651 -35.23059 -33.55199 -32.73744 -32.58237 -31.44215 -30.29063 -27.07656 -25.56637 -23.17995 -21.99593 -21.57489 -21.25797 -19.86788 -17.80335 -17.71527 -17.00165 -16.54358 -16.08271 -15.62257 -15.35467 -14.94903 -14.52947 -14.47014 -14.21922 -13.82382 -13.47960 -12.91373 -12.77731 -12.61806 -12.25395 -12.23086 -11.93575 -11.34712 -11.25764 -11.21018 -11.11964 -10.94856 -10.64815 -10.40412 -10.04981 -10.03076 -9.80555 -9.41219 -9.14881 -8.38204 -8.25757 -6.00937 -4.05532 1.77745 2.24253 3.03465 3.31719 3.36791 3.38377 3.41048 3.89038 4.10643 4.36936 4.42531 4.44785 4.57859 4.68053 4.80375 4.95640 5.04686 5.23643 5.34536 5.34739 5.36923 5.45050 5.52993 5.64345 5.76650 6.09566 6.10501 6.32875 6.64894 6.75921 6.87426 7.65219 7.68837 7.76606 7.91137 7.99997 8.31838 8.59671 9.02148 9.58447 11.09970 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.061700 B = 0.002741 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.700474 B =10213.538387 C =10493.881603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.070 3.930 7 H 0.101 0.899 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.520 5.520 11 N -0.535 5.535 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.119 4.119 15 C 0.038 3.962 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.286 1.286 24 O -0.340 6.340 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.430 0.570 33 H 0.429 0.571 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 14.240 7.342 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.187 4.187 6 C 0.007 3.993 7 H 0.119 0.881 8 C 0.299 3.701 9 O -0.397 6.397 10 N -0.268 5.268 11 N -0.287 5.287 12 C 0.302 3.698 13 O -0.407 6.407 14 C -0.160 4.160 15 C 0.000 4.000 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.212 1.212 24 O -0.258 6.258 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.272 0.728 33 H 0.271 0.729 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.089 14.188 7.216 24.854 hybrid contribution 0.522 -0.681 -0.336 0.921 sum -18.566 13.507 6.880 23.969 Atomic orbital electron populations 1.21800 0.92727 1.03324 1.02541 1.23125 0.95835 0.95470 0.84740 0.90822 1.23012 0.97348 0.99902 0.98382 1.22979 0.99850 1.02599 0.93263 1.22640 0.87582 0.95514 0.93537 0.88148 1.20340 0.80515 0.84780 0.84445 1.90746 1.53582 1.59086 1.36315 1.44689 1.13479 1.29264 1.39356 1.45574 1.15016 1.28355 1.39745 1.22121 0.78490 0.84955 0.84226 1.90688 1.53441 1.59589 1.36999 1.21909 1.02799 0.92892 0.98443 1.18941 0.86435 0.96917 0.97687 1.21190 0.97776 1.16091 1.21623 0.92406 1.25024 0.96795 0.97054 0.95492 1.69993 1.06721 1.41236 1.34852 0.86560 0.77896 0.82627 0.80686 1.20637 1.19826 1.21215 1.89322 1.24584 1.74258 1.37631 0.90934 0.91663 0.91515 0.90052 0.89903 0.89798 0.89017 0.72822 0.72896 0.89423 0.89435 0.95610 0.95593 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.52 37.16 0.35 -0.59 16 2 C 0.07 0.50 3.92 -25.95 -0.10 0.39 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.15 -0.91 6.63 -25.16 -0.17 -1.08 16 5 C -0.15 -1.09 6.62 -25.16 -0.17 -1.26 16 6 C 0.07 0.68 3.70 -27.11 -0.10 0.58 16 7 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.51 6.79 7.19 -10.99 -0.08 6.71 16 9 O -0.52 -8.90 16.39 -13.65 -0.22 -9.13 16 10 N -0.52 -6.84 6.26 31.22 0.20 -6.65 16 11 N -0.54 -8.04 6.26 31.22 0.20 -7.84 16 12 C 0.51 9.42 7.95 -10.98 -0.09 9.33 16 13 O -0.53 -11.58 15.82 5.56 0.09 -11.49 16 14 C -0.12 -2.30 5.64 -27.89 -0.16 -2.46 16 15 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 16 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 O -0.34 -3.94 10.62 -54.44 -0.58 -4.52 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.43 5.05 8.00 -182.60 -1.46 3.58 16 33 H 0.43 5.89 8.00 -182.61 -1.46 4.43 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.03 0.72 8.10 -51.92 -0.42 0.30 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -35.59 326.75 -8.65 -44.24 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.93 Total: 1.15 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.04 Total: -0.90 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 1.13 Total: -40.65 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.71 Total: -25.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.59 -8.65 -44.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294203784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.400 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds