Wall clock time and date at job start Mon Mar 30 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.33487 * 2 1 4 4 C 1.54480 * 110.37274 * 122.25693 * 2 1 3 5 5 C 1.54509 * 104.06409 * 142.80742 * 4 2 1 6 6 C 1.54477 * 104.06373 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.37361 * 94.96426 * 6 5 4 8 8 C 1.50703 * 110.37302 * 217.19417 * 6 5 4 9 9 O 1.21274 * 120.00307 * 113.44909 * 8 6 5 10 10 N 1.34774 * 119.99808 * 293.44803 * 8 6 5 11 11 N 1.40097 * 120.00136 * 179.97438 * 10 8 6 12 12 C 1.34784 * 120.00130 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 O 1.44433 * 104.89932 * 336.07489 * 6 5 4 25 25 H 1.08999 * 109.46982 * 297.74922 * 1 2 3 26 26 H 1.09007 * 109.47195 * 57.74395 * 1 2 3 27 27 H 1.08996 * 109.47582 * 177.74805 * 1 2 3 28 28 H 1.08995 * 110.50909 * 24.15756 * 4 2 1 29 29 H 1.08997 * 110.50562 * 261.45187 * 4 2 1 30 30 H 1.08996 * 110.50747 * 241.35275 * 5 4 2 31 31 H 1.08995 * 110.51051 * 118.64386 * 5 4 2 32 32 H 0.97005 * 119.99841 * 359.97438 * 10 8 6 33 33 H 0.96991 * 120.00229 * 0.02562 * 11 10 8 34 34 H 1.09002 * 109.47054 * 60.00213 * 14 12 11 35 35 H 1.08998 * 109.47224 * 299.99701 * 14 12 11 36 36 H 1.09007 * 109.46922 * 59.99702 * 15 14 12 37 37 H 1.09003 * 109.46836 * 300.00457 * 15 14 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3178 -1.5051 0.6873 6 6 3.3870 -1.0885 -0.7986 7 1 4.0535 -0.2351 -0.9228 8 6 3.8525 -2.2443 -1.6464 9 8 3.0978 -2.7496 -2.4500 10 7 5.1077 -2.7163 -1.5115 11 7 5.5403 -3.7910 -2.2992 12 6 6.7957 -4.2627 -2.1646 13 8 7.5506 -3.7570 -1.3613 14 6 7.2613 -5.4184 -3.0123 15 6 8.7132 -5.7534 -2.6649 16 6 9.1785 -6.9095 -3.5122 17 1 8.5062 -7.3600 -4.2273 18 6 10.4628 -7.3921 -3.3744 19 7 11.2817 -6.8431 -2.5040 20 14 11.0394 -8.8256 -4.4242 21 1 10.7503 -10.1015 -3.7215 22 1 10.3252 -8.8046 -5.7260 23 1 12.5011 -8.7102 -4.6596 24 8 2.0332 -0.7239 -1.1456 25 1 -0.3633 0.4785 0.9095 26 1 -0.3634 0.5485 -0.8691 27 1 -0.3634 -1.0268 -0.0404 28 1 1.3275 -1.4903 1.5786 29 1 2.3430 -0.0820 2.0215 30 1 3.1954 -2.5846 0.7756 31 1 4.2109 -1.1762 1.2185 32 1 5.7115 -2.3118 -0.8690 33 1 4.9367 -4.1952 -2.9419 34 1 7.1936 -5.1467 -4.0658 35 1 6.6316 -6.2870 -2.8198 36 1 8.7813 -6.0248 -1.6114 37 1 9.3426 -4.8846 -2.8577 38 1 12.1851 -7.1829 -2.4069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294203784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:32 Heat of formation + Delta-G solvation = -125.783592 kcal Electronic energy + Delta-G solvation = -20129.154162 eV Core-core repulsion = 16778.425612 eV Total energy + Delta-G solvation = -3350.728550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74417 -40.71145 -39.48417 -36.53971 -35.56539 -33.70239 -33.31648 -32.94574 -31.57088 -28.13332 -27.18063 -24.13540 -23.55210 -22.49768 -22.05179 -21.26176 -19.17094 -18.90082 -18.31862 -17.65395 -17.04658 -16.91237 -16.67383 -16.44573 -16.08003 -15.61038 -15.10668 -14.79777 -14.57004 -14.32725 -14.24063 -13.55560 -13.26658 -13.24736 -12.85170 -12.80940 -12.56604 -12.49213 -12.47783 -11.93762 -11.88589 -11.70946 -11.67418 -11.37088 -11.30332 -11.02203 -10.75959 -10.55228 -9.53074 -8.17620 -6.30563 0.63560 1.13052 1.44317 1.45920 1.56941 1.62587 2.42481 2.56633 3.06165 3.16167 3.36405 3.54696 3.86012 3.87932 3.97800 4.12082 4.22828 4.44288 4.45728 4.51803 4.53715 4.75585 4.90446 4.94950 4.98855 5.01010 5.16875 5.27296 5.46330 5.52116 5.58899 5.63169 5.83734 5.85823 6.17624 6.41825 6.75123 6.88260 7.25476 7.39371 8.94802 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.061700 B = 0.002741 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.700474 B =10213.538387 C =10493.881603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 H 0.093 0.907 4 C -0.143 4.143 5 C -0.147 4.147 6 C 0.071 3.929 7 H 0.131 0.869 8 C 0.516 3.484 9 O -0.565 6.565 10 N -0.514 5.514 11 N -0.523 5.523 12 C 0.520 3.480 13 O -0.573 6.573 14 C -0.110 4.110 15 C 0.043 3.957 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.257 1.257 23 H -0.287 1.287 24 O -0.377 6.377 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.438 0.562 33 H 0.438 0.562 34 H 0.111 0.889 35 H 0.112 0.888 36 H -0.011 1.011 37 H -0.011 1.011 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.315 14.543 7.276 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 H 0.111 0.889 4 C -0.181 4.181 5 C -0.185 4.185 6 C 0.009 3.991 7 H 0.148 0.852 8 C 0.303 3.697 9 O -0.441 6.441 10 N -0.263 5.263 11 N -0.273 5.273 12 C 0.309 3.691 13 O -0.450 6.450 14 C -0.151 4.151 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.181 1.181 23 H -0.213 1.213 24 O -0.296 6.296 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.281 0.719 33 H 0.281 0.719 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.293 14.501 7.142 25.944 hybrid contribution 0.797 -0.707 -0.289 1.104 sum -19.496 13.793 6.853 24.846 Atomic orbital electron populations 1.21840 0.92391 1.02598 1.03562 1.23418 0.96258 0.96180 0.84074 0.88930 1.23028 0.96530 1.00095 0.98418 1.23035 1.01741 1.01902 0.91819 1.22837 0.87597 0.94753 0.93906 0.85212 1.21146 0.79629 0.84984 0.83934 1.90723 1.54584 1.60579 1.38232 1.44845 1.13872 1.28480 1.39124 1.45190 1.14050 1.28530 1.39522 1.21711 0.79108 0.84656 0.83595 1.90678 1.54793 1.60833 1.38682 1.21649 0.98997 0.94539 0.99905 1.18715 0.90211 0.95172 0.95404 1.21697 0.98272 1.16334 1.21777 0.90600 1.26077 0.97141 1.00205 0.96842 1.70157 1.07201 1.43255 1.36924 0.85356 0.77186 0.78678 0.79240 1.19806 1.18113 1.21250 1.89293 1.25460 1.75026 1.39839 0.88439 0.92257 0.92960 0.90323 0.87187 0.91354 0.86395 0.71877 0.71884 0.87053 0.87012 0.99236 0.99251 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.52 71.98 0.69 -1.01 16 2 C 0.06 0.75 3.92 31.10 0.12 0.87 16 3 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.14 -1.39 6.63 31.61 0.21 -1.18 16 5 C -0.15 -1.84 6.62 31.61 0.21 -1.63 16 6 C 0.07 1.27 3.70 30.35 0.11 1.38 16 7 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 8 C 0.52 13.17 7.19 87.66 0.63 13.80 16 9 O -0.56 -19.10 16.39 15.36 0.25 -18.85 16 10 N -0.51 -13.03 6.26 -173.54 -1.09 -14.12 16 11 N -0.52 -15.23 6.26 -173.53 -1.09 -16.32 16 12 C 0.52 18.97 7.95 87.65 0.70 19.66 16 13 O -0.57 -25.29 15.82 -3.04 -0.05 -25.34 16 14 C -0.11 -4.17 5.64 29.85 0.17 -4.01 16 15 C 0.04 2.28 4.26 29.85 0.13 2.40 16 16 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 17 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 20 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 O -0.38 -8.34 10.62 -130.61 -1.39 -9.73 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 1.07 7.86 -2.39 -0.02 1.06 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.44 9.79 8.00 -213.32 -1.71 8.08 16 33 H 0.44 11.49 8.00 -213.33 -1.71 9.78 16 34 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 36 H -0.01 -0.64 8.10 -2.38 -0.02 -0.66 16 37 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -79.51 326.75 0.27 -79.23 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -2.34 Total: 16.41 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 3.66 Total: 0.67 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.89 Total: -88.10 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -1.18 Total: -53.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -79.51 0.27 -79.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294203784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.551 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds