Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.50161 * 2 1 4 4 C 1.53112 * 109.53721 * 239.90321 * 2 1 3 5 5 C 1.53120 * 109.16186 * 182.38314 * 4 2 1 6 6 C 1.53032 * 109.27989 * 57.65517 * 5 4 2 7 7 N 1.46849 * 109.52099 * 300.82108 * 6 5 4 8 8 C 1.46901 * 111.00312 * 185.83808 * 7 6 5 9 9 C 1.50701 * 109.47165 * 300.38798 * 8 7 6 10 10 O 1.21294 * 119.99459 * 354.46774 * 9 8 7 11 11 N 1.34773 * 120.00018 * 174.47277 * 9 8 7 12 12 C 1.37099 * 119.99861 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99884 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99875 * 180.27831 * 12 11 9 15 15 N 1.31410 * 119.99754 * 359.72192 * 14 12 11 16 16 Si 1.86800 * 119.99825 * 179.72603 * 14 12 11 17 17 H 1.48502 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47172 * 119.99698 * 16 14 12 19 19 H 1.48500 * 109.47207 * 239.99653 * 16 14 12 20 20 C 1.46844 * 111.19746 * 61.74097 * 7 6 5 21 21 H 1.08993 * 109.46603 * 58.27756 * 20 7 6 22 22 C 1.50703 * 109.46039 * 178.24174 * 20 7 6 23 23 O 1.20826 * 120.00335 * 20.00363 * 22 20 7 24 24 O 1.34229 * 119.99881 * 199.99715 * 22 20 7 25 25 H 1.09000 * 109.47159 * 299.91909 * 1 2 3 26 26 H 1.09000 * 109.47399 * 59.92229 * 1 2 3 27 27 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.52457 * 302.28593 * 4 2 1 29 29 H 1.09003 * 109.52899 * 62.41308 * 4 2 1 30 30 H 1.09007 * 109.50170 * 177.59318 * 5 4 2 31 31 H 1.08998 * 109.50658 * 297.66897 * 5 4 2 32 32 H 1.08998 * 109.46569 * 180.80610 * 6 5 4 33 33 H 1.09000 * 109.46643 * 60.83580 * 6 5 4 34 34 H 1.08997 * 109.47286 * 180.38116 * 8 7 6 35 35 H 1.09009 * 109.46771 * 60.37981 * 8 7 6 36 36 H 0.97000 * 120.00113 * 0.02562 * 11 9 8 37 37 H 0.97008 * 119.99403 * 180.02562 * 15 14 12 38 38 H 0.96698 * 116.99796 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2484 5 6 3.5720 -0.7708 -1.2099 6 6 4.0238 -1.4715 0.0734 7 7 3.5093 -0.7407 1.2386 8 6 4.0371 -1.3040 2.4884 9 6 3.6313 -2.7512 2.5981 10 8 2.8852 -3.2358 1.7737 11 7 4.0973 -3.5068 3.6121 12 6 3.7277 -4.8232 3.7121 13 1 3.0627 -5.2546 2.9786 14 6 4.2035 -5.6007 4.7609 15 7 5.0122 -5.0755 5.6538 16 14 3.6938 -7.3923 4.9015 17 1 2.7840 -7.7375 3.7797 18 1 4.9003 -8.2561 4.8447 19 1 2.9913 -7.6073 6.1920 20 6 2.0410 -0.7229 1.2483 21 1 1.6654 -1.7461 1.2547 22 6 1.5557 -0.0025 2.4798 23 8 2.2945 0.7491 3.0706 24 8 0.3026 -0.1958 2.9203 25 1 -0.3633 0.5126 0.8907 26 1 -0.3634 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6467 -1.7392 -1.2687 29 1 1.7155 -0.1878 -2.1398 30 1 3.9409 -1.3223 -2.0748 31 1 3.9681 0.2445 -1.2298 32 1 5.1129 -1.4940 0.1107 33 1 3.6390 -2.4912 0.0853 34 1 3.6350 -0.7486 3.3357 35 1 5.1248 -1.2307 2.4891 36 1 4.6936 -3.1190 4.2716 37 1 5.3447 -5.6185 6.3857 38 1 0.0366 0.2885 3.7139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300275461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -126.929340 kcal Electronic energy + Delta-G solvation = -22167.013968 eV Core-core repulsion = 18816.235735 eV Total energy + Delta-G solvation = -3350.778233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70943 -38.84608 -37.45451 -35.89387 -34.33456 -33.45536 -31.90175 -31.33589 -27.91257 -26.57954 -24.99167 -23.91248 -21.68556 -21.14670 -19.58386 -19.19697 -17.95027 -17.82725 -16.56610 -15.90951 -15.81879 -15.02985 -14.67555 -14.61988 -14.05179 -13.95657 -13.73504 -13.39041 -13.27236 -12.71216 -12.54234 -12.21566 -12.01157 -11.83268 -11.57867 -11.26405 -11.19883 -11.00203 -10.72936 -10.52371 -10.50045 -10.39417 -10.30262 -10.18993 -9.83022 -9.52399 -9.27355 -8.04558 -7.48488 -6.49121 -3.90739 2.46706 3.10281 3.18284 3.22065 3.28798 3.77515 4.11066 4.23997 4.80984 4.95864 5.03671 5.04547 5.18589 5.32326 5.51515 5.60914 5.63259 5.73034 5.79274 5.87929 5.99430 6.04315 6.07590 6.14627 6.17010 6.24918 6.29012 6.36602 6.44248 6.69091 6.73405 7.20942 7.33671 7.47659 7.96577 8.19748 8.50571 9.08225 9.44533 9.94065 10.67310 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.005581 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.268044 B = 5015.977882 C = 5317.290093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.039 3.961 7 N -0.495 5.495 8 C 0.027 3.973 9 C 0.402 3.598 10 O -0.597 6.597 11 N -0.552 5.552 12 C -0.303 4.303 13 H 0.104 0.896 14 C 0.024 3.976 15 N -0.896 5.896 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.083 3.917 21 H 0.117 0.883 22 C 0.487 3.513 23 O -0.506 6.506 24 O -0.514 6.514 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 9.527 -8.752 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.094 4.094 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.088 4.088 7 N -0.220 5.220 8 C -0.105 4.105 9 C 0.188 3.812 10 O -0.486 6.486 11 N -0.187 5.187 12 C -0.433 4.433 13 H 0.122 0.878 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.026 4.026 21 H 0.134 0.866 22 C 0.329 3.671 23 O -0.393 6.393 24 O -0.325 6.325 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.227 0.773 37 H 0.083 0.917 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.281 9.597 -9.343 14.397 hybrid contribution -0.131 -1.174 1.402 1.833 sum -5.412 8.423 -7.941 12.779 Atomic orbital electron populations 1.21911 0.94368 1.02744 1.01841 1.21072 0.95607 0.99766 0.92981 0.90469 1.21601 0.95998 1.00859 0.96385 1.21590 0.95478 1.01120 0.97131 1.22356 0.99496 0.98407 0.88508 1.62214 1.04924 1.52435 1.02378 1.22320 1.01755 0.92462 0.93926 1.21116 0.86406 0.88991 0.84686 1.90379 1.40940 1.74294 1.42948 1.42053 1.42138 1.10653 1.23819 1.19782 1.27400 0.85594 1.10529 0.87798 1.25317 0.96371 1.00657 0.95468 1.69628 1.32333 1.37531 1.14162 0.85795 0.78451 0.81704 0.78361 1.19196 1.20630 1.20657 1.21538 0.90339 1.01352 0.89360 0.86565 1.23510 0.78870 0.79222 0.85545 1.90650 1.55717 1.35470 1.57511 1.84608 1.32361 1.68245 1.47251 0.92045 0.92429 0.91972 0.91398 0.91721 0.91554 0.91639 0.91068 0.90294 0.88087 0.88861 0.77308 0.91738 0.73879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.77 37.16 0.33 -1.45 16 2 C -0.08 -1.02 2.39 -90.55 -0.22 -1.24 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 4 C -0.11 -1.38 5.29 -26.61 -0.14 -1.52 16 5 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 6 C 0.04 0.65 5.00 -3.84 -0.02 0.63 16 7 N -0.50 -8.73 4.46 -229.52 -1.02 -9.75 16 8 C 0.03 0.52 5.41 -4.97 -0.03 0.49 16 9 C 0.40 9.36 7.18 -10.99 -0.08 9.28 16 10 O -0.60 -15.01 11.22 5.55 0.06 -14.95 16 11 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 12 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 13 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 16 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.08 1.42 1.49 -68.88 -0.10 1.32 16 21 H 0.12 2.32 5.69 -51.93 -0.30 2.03 16 22 C 0.49 8.24 6.15 36.01 0.22 8.46 16 23 O -0.51 -9.53 15.32 -18.75 -0.29 -9.82 16 24 O -0.51 -7.19 11.73 -39.25 -0.46 -7.65 16 25 H 0.06 0.73 6.20 -51.93 -0.32 0.41 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.08 1.53 5.68 -51.93 -0.29 1.24 16 34 H 0.10 2.02 5.51 -51.93 -0.29 1.73 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 36 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.40 3.78 9.10 45.56 0.41 4.20 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -31.16 303.70 -6.35 -37.50 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -4.42 Total: 15.56 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.44 Total: 6.37 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.36 Total: -47.39 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.69 Total: -32.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.16 -6.35 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300275461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.425 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds