Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.50161 * 2 1 4 4 C 1.53112 * 109.53721 * 239.90321 * 2 1 3 5 5 C 1.53120 * 109.16186 * 182.38314 * 4 2 1 6 6 C 1.53032 * 109.27989 * 57.65517 * 5 4 2 7 7 N 1.46849 * 109.52099 * 300.82108 * 6 5 4 8 8 C 1.46901 * 111.00312 * 185.83808 * 7 6 5 9 9 C 1.50701 * 109.47165 * 300.38798 * 8 7 6 10 10 O 1.21294 * 119.99459 * 354.46774 * 9 8 7 11 11 N 1.34773 * 120.00018 * 174.47277 * 9 8 7 12 12 C 1.37099 * 119.99861 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99884 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99875 * 180.27831 * 12 11 9 15 15 N 1.31410 * 119.99754 * 359.72192 * 14 12 11 16 16 Si 1.86800 * 119.99825 * 179.72603 * 14 12 11 17 17 H 1.48502 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47172 * 119.99698 * 16 14 12 19 19 H 1.48500 * 109.47207 * 239.99653 * 16 14 12 20 20 C 1.46844 * 111.19746 * 61.74097 * 7 6 5 21 21 H 1.08993 * 109.46603 * 58.27756 * 20 7 6 22 22 C 1.50703 * 109.46039 * 178.24174 * 20 7 6 23 23 O 1.20826 * 120.00335 * 20.00363 * 22 20 7 24 24 O 1.34229 * 119.99881 * 199.99715 * 22 20 7 25 25 H 1.09000 * 109.47159 * 299.91909 * 1 2 3 26 26 H 1.09000 * 109.47399 * 59.92229 * 1 2 3 27 27 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.52457 * 302.28593 * 4 2 1 29 29 H 1.09003 * 109.52899 * 62.41308 * 4 2 1 30 30 H 1.09007 * 109.50170 * 177.59318 * 5 4 2 31 31 H 1.08998 * 109.50658 * 297.66897 * 5 4 2 32 32 H 1.08998 * 109.46569 * 180.80610 * 6 5 4 33 33 H 1.09000 * 109.46643 * 60.83580 * 6 5 4 34 34 H 1.08997 * 109.47286 * 180.38116 * 8 7 6 35 35 H 1.09009 * 109.46771 * 60.37981 * 8 7 6 36 36 H 0.97000 * 120.00113 * 0.02562 * 11 9 8 37 37 H 0.97008 * 119.99403 * 180.02562 * 15 14 12 38 38 H 0.96698 * 116.99796 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2484 5 6 3.5720 -0.7708 -1.2099 6 6 4.0238 -1.4715 0.0734 7 7 3.5093 -0.7407 1.2386 8 6 4.0371 -1.3040 2.4884 9 6 3.6313 -2.7512 2.5981 10 8 2.8852 -3.2358 1.7737 11 7 4.0973 -3.5068 3.6121 12 6 3.7277 -4.8232 3.7121 13 1 3.0627 -5.2546 2.9786 14 6 4.2035 -5.6007 4.7609 15 7 5.0122 -5.0755 5.6538 16 14 3.6938 -7.3923 4.9015 17 1 2.7840 -7.7375 3.7797 18 1 4.9003 -8.2561 4.8447 19 1 2.9913 -7.6073 6.1920 20 6 2.0410 -0.7229 1.2483 21 1 1.6654 -1.7461 1.2547 22 6 1.5557 -0.0025 2.4798 23 8 2.2945 0.7491 3.0706 24 8 0.3026 -0.1958 2.9203 25 1 -0.3633 0.5126 0.8907 26 1 -0.3634 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6467 -1.7392 -1.2687 29 1 1.7155 -0.1878 -2.1398 30 1 3.9409 -1.3223 -2.0748 31 1 3.9681 0.2445 -1.2298 32 1 5.1129 -1.4940 0.1107 33 1 3.6390 -2.4912 0.0853 34 1 3.6350 -0.7486 3.3357 35 1 5.1248 -1.2307 2.4891 36 1 4.6936 -3.1190 4.2716 37 1 5.3447 -5.6185 6.3857 38 1 0.0366 0.2885 3.7139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300275461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -150.485107 kcal Electronic energy + Delta-G solvation = -22168.035422 eV Core-core repulsion = 18816.235735 eV Total energy + Delta-G solvation = -3351.799688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08447 -40.42344 -38.95132 -37.17466 -36.14798 -34.94650 -33.37875 -33.04498 -29.42435 -27.82865 -26.68446 -25.37683 -22.97565 -22.35528 -21.16159 -20.70884 -19.87140 -19.15123 -18.09217 -17.55553 -17.14156 -16.61188 -16.32778 -15.98508 -15.71361 -15.56195 -15.17871 -14.73862 -14.58354 -14.02118 -13.74338 -13.56272 -13.48048 -13.31949 -13.11850 -12.93183 -12.46868 -12.42775 -12.27160 -12.14571 -11.98783 -11.85108 -11.57680 -11.42866 -11.28545 -11.13436 -10.98577 -10.05930 -9.12138 -8.50972 -6.01711 1.12339 1.32346 1.38679 1.52877 1.92163 1.97184 2.25306 2.87571 3.14043 3.15345 3.74396 3.90652 3.91818 4.17925 4.27419 4.34174 4.35604 4.49184 4.52578 4.57013 4.73151 4.79848 4.90166 4.96685 5.01871 5.12879 5.20915 5.23036 5.35593 5.38562 5.52797 5.55016 5.77687 5.93189 5.97791 6.50363 6.99124 7.04558 7.46071 7.98943 8.64910 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.005581 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.268044 B = 5015.977882 C = 5317.290093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 H 0.083 0.917 4 C -0.109 4.109 5 C -0.109 4.109 6 C 0.037 3.963 7 N -0.490 5.490 8 C 0.036 3.964 9 C 0.406 3.594 10 O -0.616 6.616 11 N -0.566 5.566 12 C -0.334 4.334 13 H 0.082 0.918 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.995 3.005 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.271 1.271 20 C 0.080 3.920 21 H 0.084 0.916 22 C 0.487 3.513 23 O -0.529 6.529 24 O -0.509 6.509 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.394 0.606 37 H 0.279 0.721 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 10.270 -9.750 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.090 4.090 7 N -0.213 5.213 8 C -0.096 4.096 9 C 0.193 3.807 10 O -0.504 6.504 11 N -0.202 5.202 12 C -0.464 4.464 13 H 0.100 0.900 14 C -0.213 4.213 15 N -0.559 5.559 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.030 4.030 21 H 0.101 0.899 22 C 0.330 3.670 23 O -0.418 6.418 24 O -0.322 6.322 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.717 10.359 -10.341 15.714 hybrid contribution -0.056 -1.352 1.686 2.162 sum -5.772 9.007 -8.655 13.761 Atomic orbital electron populations 1.21887 0.92969 1.02453 1.03097 1.21139 0.96766 0.99527 0.91618 0.89850 1.21626 0.95532 1.00382 0.97084 1.21586 0.95925 1.01566 0.95563 1.22414 0.99744 0.96940 0.89893 1.62337 1.05532 1.51601 1.01868 1.22298 1.02847 0.89312 0.95102 1.21921 0.85039 0.90333 0.83383 1.90387 1.41391 1.75280 1.43356 1.42130 1.42988 1.10394 1.24661 1.19739 1.28484 0.87007 1.11129 0.89973 1.26112 0.95994 1.04501 0.94667 1.69695 1.32736 1.39024 1.14486 0.84846 0.78307 0.76714 0.78316 1.19607 1.19486 1.19630 1.21615 0.89779 1.00123 0.91483 0.89861 1.23513 0.79362 0.78784 0.85314 1.90637 1.56471 1.36624 1.58089 1.84561 1.30939 1.68312 1.48380 0.92285 0.89677 0.93016 0.92858 0.88440 0.89646 0.90330 0.90543 0.93799 0.88375 0.87130 0.77240 0.91180 0.71463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.77 71.98 0.63 -2.53 16 2 C -0.07 -1.81 2.39 -10.75 -0.03 -1.84 16 3 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 4 C -0.11 -2.46 5.29 30.67 0.16 -2.29 16 5 C -0.11 -2.57 6.09 30.65 0.19 -2.38 16 6 C 0.04 1.20 5.00 86.32 0.43 1.63 16 7 N -0.49 -17.05 4.46 -880.06 -3.92 -20.98 16 8 C 0.04 1.41 5.41 85.56 0.46 1.87 16 9 C 0.41 19.43 7.18 87.66 0.63 20.06 16 10 O -0.62 -32.07 11.22 -3.07 -0.03 -32.10 16 11 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 12 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 13 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 15 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 16 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.08 2.68 1.49 44.19 0.07 2.75 16 21 H 0.08 3.42 5.69 -2.39 -0.01 3.41 16 22 C 0.49 16.27 6.15 71.24 0.44 16.71 16 23 O -0.53 -19.60 15.32 21.96 0.34 -19.26 16 24 O -0.51 -13.85 11.73 -51.41 -0.60 -14.45 16 25 H 0.06 1.29 6.20 -2.39 -0.01 1.28 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.33 8.12 -2.39 -0.02 2.32 16 33 H 0.04 1.74 5.68 -2.39 -0.01 1.73 16 34 H 0.10 3.94 5.51 -2.39 -0.01 3.93 16 35 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 36 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 37 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 38 H 0.42 7.42 9.10 -74.06 -0.67 6.74 16 Total: -1.00 -67.81 303.70 0.42 -67.39 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.31 Total: 39.85 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 4.26 Total: 15.67 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.26 Total: -101.92 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -0.30 Total: -65.81 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.81 0.42 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300275461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.091 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds