Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.53648 * 2 1 4 4 C 1.53041 * 109.50305 * 120.09904 * 2 1 3 5 5 N 1.46847 * 109.51486 * 60.75882 * 4 2 1 6 6 C 1.46899 * 110.99299 * 185.84807 * 5 4 2 7 7 C 1.50696 * 109.47180 * 301.84381 * 6 5 4 8 8 O 1.21294 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00458 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99534 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00328 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00099 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99966 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46802 * 90.00641 * 14 12 10 16 16 H 1.48507 * 109.46906 * 210.00267 * 14 12 10 17 17 H 1.48494 * 109.47387 * 330.00282 * 14 12 10 18 18 C 1.46847 * 111.20163 * 61.75514 * 5 4 2 19 19 C 1.53044 * 109.51335 * 298.24410 * 18 5 4 20 20 C 1.53119 * 109.27589 * 59.18419 * 19 18 5 21 21 H 1.08993 * 109.52284 * 62.25342 * 20 19 18 22 22 C 1.50700 * 109.51956 * 182.44007 * 20 19 18 23 23 O 1.20823 * 120.00299 * 119.99440 * 22 20 19 24 24 O 1.34232 * 120.00084 * 300.00063 * 22 20 19 25 25 H 1.08998 * 109.47115 * 180.09731 * 1 2 3 26 26 H 1.08999 * 109.47040 * 300.09575 * 1 2 3 27 27 H 1.08991 * 109.47203 * 60.09958 * 1 2 3 28 28 H 1.09005 * 109.45785 * 180.77386 * 4 2 1 29 29 H 1.08995 * 109.46178 * 300.75470 * 4 2 1 30 30 H 1.09004 * 109.46859 * 61.84029 * 6 5 4 31 31 H 1.08996 * 109.47621 * 181.83654 * 6 5 4 32 32 H 0.97006 * 120.00015 * 359.97438 * 9 7 6 33 33 H 0.96997 * 120.00062 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46448 * 178.23132 * 18 5 4 35 35 H 1.08994 * 109.45958 * 58.25497 * 18 5 4 36 36 H 1.09000 * 109.49745 * 179.12223 * 19 18 5 37 37 H 1.08996 * 109.50070 * 299.23917 * 19 18 5 38 38 H 0.96698 * 116.99969 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 1.2481 5 7 1.5674 -2.1134 1.2377 6 6 1.9219 -2.7995 2.4874 7 6 3.4166 -2.7609 2.6750 8 8 4.1177 -2.2159 1.8487 9 7 3.9746 -3.3328 3.7603 10 6 5.3345 -3.2982 3.9308 11 1 5.9587 -2.8122 3.1955 12 6 5.9098 -3.8883 5.0495 13 7 7.2132 -3.8546 5.2131 14 14 4.8302 -4.7282 6.3216 15 1 4.6620 -6.1589 5.9610 16 1 5.4695 -4.6265 7.6582 17 1 3.5010 -4.0671 6.3571 18 6 2.0846 -2.8420 0.0724 19 6 1.5749 -2.1818 -1.2108 20 6 2.0412 -0.7238 -1.2487 21 1 3.1304 -0.6902 -1.2690 22 6 1.4923 -0.0515 -2.4806 23 8 0.7710 0.9118 -2.3726 24 8 1.8045 -0.5228 -3.6981 25 1 -0.3633 -1.0276 0.0017 26 1 -0.3633 0.5153 0.8891 27 1 -0.3633 0.5122 -0.8908 28 1 3.1309 -0.7110 1.2543 29 1 1.6668 -0.2190 2.1389 30 1 1.4374 -2.2998 3.3263 31 1 1.5883 -3.8361 2.4401 32 1 3.4140 -3.7690 4.4210 33 1 7.6148 -4.2662 5.9942 34 1 1.7423 -3.8763 0.1094 35 1 3.1742 -2.8195 0.0843 36 1 1.9715 -2.7134 -2.0758 37 1 0.4856 -2.2162 -1.2298 38 1 1.4283 -0.0587 -4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304330358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -118.674261 kcal Electronic energy + Delta-G solvation = -21595.017537 eV Core-core repulsion = 18244.597271 eV Total energy + Delta-G solvation = -3350.420266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82635 -39.39375 -37.61460 -36.20757 -34.32865 -33.39913 -31.76786 -31.51855 -28.05258 -26.97097 -24.98016 -23.34556 -22.58845 -21.43398 -19.50445 -18.79088 -18.20269 -18.05731 -16.68753 -16.16156 -15.89176 -15.29268 -14.92427 -14.84069 -14.26308 -14.03593 -13.65348 -13.45581 -13.09882 -13.09613 -12.64403 -12.32613 -12.15776 -11.76288 -11.56752 -11.38685 -11.33946 -11.20536 -10.90850 -10.67583 -10.63864 -10.47811 -10.21488 -10.06529 -9.90163 -9.55454 -9.31380 -8.24437 -7.49362 -6.38981 -3.90325 2.16304 2.98171 3.00996 3.02457 3.11218 3.61607 4.03994 4.23815 4.60458 4.65087 4.80578 5.07679 5.14489 5.32516 5.39575 5.55428 5.62786 5.65217 5.73494 5.79287 5.89587 5.94126 5.97346 6.01903 6.09772 6.25157 6.33271 6.43341 6.52714 6.63487 6.73275 7.25957 7.38342 7.49346 7.85908 8.07528 8.50051 8.86752 9.34582 9.72732 10.73795 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040202 B = 0.004207 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.307815 B = 6653.359063 C = 6871.689794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.067 4.067 3 H 0.075 0.925 4 C 0.037 3.963 5 N -0.511 5.511 6 C 0.039 3.961 7 C 0.415 3.585 8 O -0.577 6.577 9 N -0.583 5.583 10 C -0.308 4.308 11 H 0.119 0.881 12 C 0.043 3.957 13 N -0.878 5.878 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.268 1.268 18 C 0.042 3.958 19 C -0.102 4.102 20 C -0.076 4.076 21 H 0.110 0.890 22 C 0.484 3.516 23 O -0.512 6.512 24 O -0.517 6.517 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.371 0.629 33 H 0.274 0.726 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 2.702 -10.341 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.090 4.090 5 N -0.234 5.234 6 C -0.093 4.093 7 C 0.201 3.799 8 O -0.462 6.462 9 N -0.221 5.221 10 C -0.437 4.437 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.518 5.518 14 Si 0.706 3.294 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.194 1.194 18 C -0.086 4.086 19 C -0.140 4.140 20 C -0.095 4.095 21 H 0.128 0.872 22 C 0.327 3.673 23 O -0.401 6.401 24 O -0.328 6.328 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.204 0.796 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.450 3.073 -10.420 17.289 hybrid contribution 0.022 -0.411 0.790 0.891 sum -13.427 2.662 -9.630 16.737 Atomic orbital electron populations 1.22059 0.94366 1.02472 1.02171 1.21024 0.97189 0.98353 0.92055 0.90676 1.22474 1.02085 0.88009 0.96451 1.62437 1.57358 1.02362 1.01215 1.22088 0.92858 1.00562 0.93809 1.21083 0.90502 0.84485 0.83858 1.90423 1.63679 1.48091 1.44028 1.42418 1.08223 1.50511 1.20934 1.19449 0.80666 1.35094 1.08518 0.86343 1.25076 0.95789 0.97604 0.97599 1.69623 1.09238 1.43682 1.29209 0.86665 0.80341 0.80429 0.81950 1.19547 1.20121 1.19367 1.22219 1.00737 0.96705 0.88933 1.21573 1.01661 0.92229 0.98523 1.21197 1.02467 0.96838 0.89018 0.87246 1.23749 0.77299 0.81576 0.84630 1.90627 1.35288 1.27194 1.86958 1.84589 1.71095 1.60175 1.16982 0.91797 0.93269 0.91225 0.89471 0.91268 0.89146 0.89218 0.79574 0.91516 0.91106 0.90999 0.90649 0.90911 0.73723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.40 37.16 0.31 -1.69 16 2 C -0.07 -0.92 2.42 -90.54 -0.22 -1.14 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.04 0.58 4.41 -3.83 -0.02 0.57 16 5 N -0.51 -7.66 4.14 -236.11 -0.98 -8.64 16 6 C 0.04 0.61 5.86 -4.98 -0.03 0.58 16 7 C 0.41 8.73 7.20 -10.99 -0.08 8.65 16 8 O -0.58 -13.91 11.20 5.55 0.06 -13.85 16 9 N -0.58 -13.27 5.09 -10.97 -0.06 -13.33 16 10 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 11 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.16 13.96 55.50 0.77 -24.39 16 14 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 18 C 0.04 0.61 5.10 -3.83 -0.02 0.59 16 19 C -0.10 -1.25 4.95 -26.65 -0.13 -1.38 16 20 C -0.08 -0.98 2.48 -91.65 -0.23 -1.21 16 21 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 22 C 0.48 5.93 7.33 36.01 0.26 6.19 16 23 O -0.51 -7.34 14.29 -18.75 -0.27 -7.61 16 24 O -0.52 -4.99 13.35 -39.26 -0.52 -5.51 16 25 H 0.06 0.83 6.01 -51.93 -0.31 0.52 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.96 5.34 -51.93 -0.28 0.68 16 28 H 0.09 1.65 5.36 -51.93 -0.28 1.38 16 29 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 32 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 35 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 38 H 0.40 2.10 9.10 45.56 0.41 2.51 16 LS Contribution 299.10 15.07 4.51 4.51 Total: -1.00 -31.73 299.10 -5.86 -37.59 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.27 Total: 13.41 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.39 Total: 3.62 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.26 Total: -46.35 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.73 Total: -26.97 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.73 -5.86 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304330358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.082 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds