Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.53648 * 2 1 4 4 C 1.53041 * 109.50305 * 120.09904 * 2 1 3 5 5 N 1.46847 * 109.51486 * 60.75882 * 4 2 1 6 6 C 1.46899 * 110.99299 * 185.84807 * 5 4 2 7 7 C 1.50696 * 109.47180 * 301.84381 * 6 5 4 8 8 O 1.21294 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00458 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99534 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00328 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00099 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99966 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46802 * 90.00641 * 14 12 10 16 16 H 1.48507 * 109.46906 * 210.00267 * 14 12 10 17 17 H 1.48494 * 109.47387 * 330.00282 * 14 12 10 18 18 C 1.46847 * 111.20163 * 61.75514 * 5 4 2 19 19 C 1.53044 * 109.51335 * 298.24410 * 18 5 4 20 20 C 1.53119 * 109.27589 * 59.18419 * 19 18 5 21 21 H 1.08993 * 109.52284 * 62.25342 * 20 19 18 22 22 C 1.50700 * 109.51956 * 182.44007 * 20 19 18 23 23 O 1.20823 * 120.00299 * 119.99440 * 22 20 19 24 24 O 1.34232 * 120.00084 * 300.00063 * 22 20 19 25 25 H 1.08998 * 109.47115 * 180.09731 * 1 2 3 26 26 H 1.08999 * 109.47040 * 300.09575 * 1 2 3 27 27 H 1.08991 * 109.47203 * 60.09958 * 1 2 3 28 28 H 1.09005 * 109.45785 * 180.77386 * 4 2 1 29 29 H 1.08995 * 109.46178 * 300.75470 * 4 2 1 30 30 H 1.09004 * 109.46859 * 61.84029 * 6 5 4 31 31 H 1.08996 * 109.47621 * 181.83654 * 6 5 4 32 32 H 0.97006 * 120.00015 * 359.97438 * 9 7 6 33 33 H 0.96997 * 120.00062 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46448 * 178.23132 * 18 5 4 35 35 H 1.08994 * 109.45958 * 58.25497 * 18 5 4 36 36 H 1.09000 * 109.49745 * 179.12223 * 19 18 5 37 37 H 1.08996 * 109.50070 * 299.23917 * 19 18 5 38 38 H 0.96698 * 116.99969 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 1.2481 5 7 1.5674 -2.1134 1.2377 6 6 1.9219 -2.7995 2.4874 7 6 3.4166 -2.7609 2.6750 8 8 4.1177 -2.2159 1.8487 9 7 3.9746 -3.3328 3.7603 10 6 5.3345 -3.2982 3.9308 11 1 5.9587 -2.8122 3.1955 12 6 5.9098 -3.8883 5.0495 13 7 7.2132 -3.8546 5.2131 14 14 4.8302 -4.7282 6.3216 15 1 4.6620 -6.1589 5.9610 16 1 5.4695 -4.6265 7.6582 17 1 3.5010 -4.0671 6.3571 18 6 2.0846 -2.8420 0.0724 19 6 1.5749 -2.1818 -1.2108 20 6 2.0412 -0.7238 -1.2487 21 1 3.1304 -0.6902 -1.2690 22 6 1.4923 -0.0515 -2.4806 23 8 0.7710 0.9118 -2.3726 24 8 1.8045 -0.5228 -3.6981 25 1 -0.3633 -1.0276 0.0017 26 1 -0.3633 0.5153 0.8891 27 1 -0.3633 0.5122 -0.8908 28 1 3.1309 -0.7110 1.2543 29 1 1.6668 -0.2190 2.1389 30 1 1.4374 -2.2998 3.3263 31 1 1.5883 -3.8361 2.4401 32 1 3.4140 -3.7690 4.4210 33 1 7.6148 -4.2662 5.9942 34 1 1.7423 -3.8763 0.1094 35 1 3.1742 -2.8195 0.0843 36 1 1.9715 -2.7134 -2.0758 37 1 0.4856 -2.2162 -1.2298 38 1 1.4283 -0.0587 -4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304330358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -143.794642 kcal Electronic energy + Delta-G solvation = -21596.106838 eV Core-core repulsion = 18244.597271 eV Total energy + Delta-G solvation = -3351.509567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88723 -40.80252 -39.00653 -37.15343 -36.08319 -34.77932 -33.75592 -32.62763 -29.42887 -28.11710 -26.64562 -24.69998 -23.69262 -22.52807 -21.30057 -20.36344 -19.60182 -19.01650 -17.82231 -17.67918 -17.12588 -16.65942 -16.33818 -16.13655 -15.68556 -15.50825 -15.06573 -14.78775 -14.46543 -14.36262 -14.12487 -13.75266 -13.43305 -13.06661 -12.92088 -12.57434 -12.48334 -12.42701 -12.30621 -12.10813 -11.99126 -11.89025 -11.55881 -11.40389 -11.29455 -10.97723 -10.91699 -10.20582 -8.96187 -8.41984 -6.02029 1.19293 1.31011 1.35361 1.44634 1.93821 2.13070 2.22865 2.99240 3.01436 3.15791 3.56548 3.73356 4.03882 4.17287 4.25846 4.40619 4.41855 4.48753 4.56817 4.67224 4.68897 4.83586 4.87331 4.92033 4.98227 5.16892 5.22805 5.31407 5.38590 5.51958 5.53685 5.75701 5.92944 6.04682 6.12602 6.58287 6.89007 7.03544 7.40217 7.96405 8.75582 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040202 B = 0.004207 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.307815 B = 6653.359063 C = 6871.689794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.068 0.932 4 C 0.042 3.958 5 N -0.497 5.497 6 C 0.046 3.954 7 C 0.418 3.582 8 O -0.611 6.611 9 N -0.589 5.589 10 C -0.326 4.326 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.278 1.278 17 H -0.230 1.230 18 C 0.041 3.959 19 C -0.092 4.092 20 C -0.080 4.080 21 H 0.096 0.904 22 C 0.495 3.505 23 O -0.534 6.534 24 O -0.511 6.511 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.389 0.611 33 H 0.278 0.722 34 H 0.089 0.911 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 1.616 -10.120 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 H 0.087 0.913 4 C -0.086 4.086 5 N -0.219 5.219 6 C -0.086 4.086 7 C 0.205 3.795 8 O -0.497 6.497 9 N -0.230 5.230 10 C -0.456 4.456 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.576 5.576 14 Si 0.783 3.217 15 H -0.182 1.182 16 H -0.203 1.203 17 H -0.153 1.153 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.099 4.099 21 H 0.114 0.886 22 C 0.338 3.662 23 O -0.425 6.425 24 O -0.325 6.325 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.225 0.775 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -17.083 1.999 -10.254 20.024 hybrid contribution 1.212 0.020 0.518 1.318 sum -15.871 2.018 -9.736 18.728 Atomic orbital electron populations 1.21949 0.93152 1.02670 1.02167 1.20948 0.97966 0.97805 0.91586 0.91348 1.22350 0.99597 0.88870 0.97786 1.62539 1.56210 1.01951 1.01234 1.22304 0.88077 1.03124 0.95075 1.22384 0.92971 0.81876 0.82226 1.90454 1.65529 1.48674 1.45012 1.42270 1.06436 1.51986 1.22345 1.19007 0.82630 1.35933 1.08025 0.92713 1.26118 0.97400 0.97921 0.99929 1.69808 1.11957 1.45359 1.30485 0.85383 0.79420 0.79491 0.77359 1.18161 1.20319 1.15326 1.22247 0.98451 0.98071 0.89900 1.21518 1.02306 0.91429 0.97742 1.21140 1.01763 0.97543 0.89481 0.88588 1.23395 0.76678 0.80983 0.85109 1.90628 1.36369 1.28057 1.87399 1.84527 1.70848 1.60114 1.16961 0.91362 0.92807 0.91692 0.93450 0.90758 0.86357 0.85847 0.77531 0.91228 0.89222 0.94877 0.89277 0.89549 0.71175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.40 71.98 0.60 -2.80 16 2 C -0.06 -1.70 2.42 -10.74 -0.03 -1.73 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 4 C 0.04 1.28 4.41 86.33 0.38 1.66 16 5 N -0.50 -13.83 4.14 -900.92 -3.73 -17.56 16 6 C 0.05 1.31 5.86 85.56 0.50 1.81 16 7 C 0.42 17.49 7.20 87.66 0.63 18.12 16 8 O -0.61 -30.73 11.20 -3.07 -0.03 -30.77 16 9 N -0.59 -26.59 5.09 -306.99 -1.56 -28.15 16 10 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 11 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 12 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 13 N -0.94 -55.89 13.96 21.66 0.30 -55.59 16 14 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 15 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 16 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 18 C 0.04 1.14 5.10 86.33 0.44 1.58 16 19 C -0.09 -2.07 4.95 30.65 0.15 -1.92 16 20 C -0.08 -1.99 2.48 -11.46 -0.03 -2.02 16 21 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 22 C 0.49 11.33 7.33 71.24 0.52 11.85 16 23 O -0.53 -14.51 14.29 21.97 0.31 -14.19 16 24 O -0.51 -8.70 13.35 -51.44 -0.69 -9.39 16 25 H 0.07 1.56 6.01 -2.39 -0.01 1.55 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.66 5.34 -2.39 -0.01 1.65 16 28 H 0.05 1.87 5.36 -2.38 -0.01 1.86 16 29 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 30 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.12 2.80 8.06 -2.39 -0.02 2.78 16 32 H 0.39 14.56 5.76 -92.70 -0.53 14.02 16 33 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.09 2.14 8.06 -2.39 -0.02 2.12 16 35 H 0.03 1.19 6.00 -2.39 -0.01 1.18 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 1.75 6.58 -2.39 -0.02 1.73 16 38 H 0.43 3.29 9.10 -74.06 -0.67 2.61 16 Total: -1.00 -74.20 299.10 0.84 -73.36 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.16 Total: 33.87 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 4.50 Total: 8.42 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.99 Total: -101.31 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.41 Total: -54.35 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -74.20 0.84 -73.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304330358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.436 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds