Wall clock time and date at job start Mon Mar 30 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 N 1.46906 * 109.47448 * 180.02562 * 15 13 12 17 17 C 1.47016 * 110.99545 * 293.63345 * 16 15 13 18 18 C 1.53093 * 109.25434 * 177.60733 * 17 16 15 19 19 O 1.43007 * 109.26269 * 56.84887 * 18 17 16 20 20 C 1.43016 * 113.73845 * 301.32969 * 19 18 17 21 21 C 1.47009 * 110.99852 * 169.99797 * 16 15 13 22 22 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 25 25 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 26 26 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 27 27 H 1.09005 * 109.46852 * 299.99475 * 15 13 12 28 28 H 1.09001 * 109.47603 * 59.99590 * 15 13 12 29 29 H 1.08999 * 109.50954 * 297.54014 * 17 16 15 30 30 H 1.09000 * 109.50462 * 57.67347 * 17 16 15 31 31 H 1.09006 * 109.50733 * 296.91055 * 18 17 16 32 32 H 1.09006 * 109.54058 * 176.80506 * 18 17 16 33 33 H 1.09001 * 109.50616 * 298.73498 * 20 19 18 34 34 H 1.09002 * 109.54828 * 178.62482 * 20 19 18 35 35 H 1.08998 * 109.51173 * 302.32305 * 21 16 15 36 36 H 1.08998 * 109.50771 * 62.46119 * 21 16 15 37 37 H 1.08993 * 113.76952 * 221.15022 * 22 12 11 38 38 H 1.08995 * 113.86700 * 89.76371 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 7 -0.4166 -7.1637 2.6877 17 6 -0.9801 -7.8244 1.5014 18 6 -1.1110 -9.3252 1.7738 19 8 -1.9164 -9.5248 2.9385 20 6 -1.3966 -8.8953 4.1127 21 6 -1.2686 -7.3900 3.8641 22 6 2.1609 -3.7402 0.0462 23 1 -0.4850 0.8401 0.0004 24 1 -0.3474 -1.7969 -1.0267 25 1 1.3275 -2.4975 2.2141 26 1 -0.3215 -2.8326 1.5249 27 1 0.0892 -5.2437 3.3735 28 1 -1.1565 -5.2861 2.1027 29 1 -1.9634 -7.4067 1.2847 30 1 -0.3204 -7.6654 0.6484 31 1 -0.1219 -9.7530 1.9375 32 1 -1.5808 -9.8113 0.9187 33 1 -0.4158 -9.3106 4.3445 34 1 -2.0727 -9.0697 4.9498 35 1 -0.8195 -6.9140 4.7358 36 1 -2.2564 -6.9654 3.6852 37 1 2.2027 -4.2899 -0.8940 38 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329399335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:48 Heat of formation + Delta-G solvation = -79.190182 kcal Electronic energy + Delta-G solvation = -21309.415073 eV Core-core repulsion = 17960.706966 eV Total energy + Delta-G solvation = -3348.708108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93973 -39.10570 -37.40395 -35.28661 -33.95581 -32.25827 -31.18445 -29.87578 -28.05876 -25.73366 -25.28599 -24.10462 -23.97451 -20.52303 -20.02920 -18.28651 -17.43616 -16.68814 -16.33938 -16.05738 -15.47379 -15.44068 -15.10783 -14.97796 -14.42466 -14.21716 -14.03553 -13.55867 -13.18032 -12.76648 -12.46655 -12.15997 -12.04278 -11.86093 -11.59892 -11.40745 -11.20630 -11.10221 -11.05571 -10.61163 -10.56720 -10.33210 -9.87015 -9.57639 -9.15037 -8.79759 -8.47920 -8.34132 -7.83904 -6.42671 -4.53078 3.13978 3.17055 3.20015 3.21647 3.31018 3.77879 3.98546 4.16192 4.76898 4.82494 4.90293 4.97717 5.07919 5.19234 5.25008 5.43437 5.49820 5.50170 5.57372 5.61757 5.70724 5.90690 5.94764 5.99700 6.17227 6.33487 6.46305 6.55816 6.62796 6.88050 6.93509 7.06501 7.09765 7.59445 7.78677 8.46247 8.50115 8.77110 9.18215 9.38115 10.64031 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043521 B = 0.003897 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.206733 B = 7184.054505 C = 7346.731340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.077 3.923 12 N -0.635 5.635 13 C 0.530 3.470 14 O -0.549 6.549 15 C 0.044 3.956 16 N -0.519 5.519 17 C 0.012 3.988 18 C 0.067 3.933 19 O -0.390 6.390 20 C 0.066 3.934 21 C 0.016 3.984 22 C 0.114 3.886 23 H 0.273 0.727 24 H 0.391 0.609 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -9.263 7.163 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.045 4.045 12 N -0.369 5.369 13 C 0.319 3.681 14 O -0.429 6.429 15 C -0.087 4.087 16 N -0.245 5.245 17 C -0.115 4.115 18 C -0.010 4.010 19 O -0.309 6.309 20 C -0.011 4.011 21 C -0.112 4.112 22 C -0.008 4.008 23 H 0.084 0.916 24 H 0.246 0.754 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.690 -10.719 6.921 13.040 hybrid contribution -0.455 2.153 0.181 2.208 sum -3.145 -8.566 7.102 11.563 Atomic orbital electron populations 1.69391 1.06179 1.28290 1.50020 1.25065 0.95020 0.99855 0.93032 0.86391 0.79512 0.81625 0.79014 1.21009 1.19885 1.19836 1.21476 0.93929 0.89980 1.52283 0.91087 1.19845 0.85665 0.91247 0.83548 1.86062 1.47081 1.49835 1.55477 1.24346 0.99897 0.77603 1.02691 1.50250 1.40324 1.04713 1.41627 1.19927 0.83762 0.81800 0.82644 1.90591 1.56124 1.39156 1.56988 1.21880 0.98120 0.89241 0.99473 1.61867 1.47856 1.10471 1.04292 1.22973 0.98812 0.94984 0.94774 1.22657 0.95692 0.94706 0.87900 1.87943 1.50387 1.74576 1.17980 1.22621 0.99653 0.90815 0.88000 1.22822 0.95961 0.97996 0.94399 1.23419 0.93311 0.92664 0.91359 0.91633 0.75390 0.89963 0.91453 0.88161 0.91992 0.94504 0.87413 0.92074 0.88532 0.92251 0.88567 0.89588 0.93916 0.91210 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.25 11.20 55.43 0.62 -21.63 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.54 -13.23 8.61 -34.44 -0.30 -13.53 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.59 1.40 -90.84 -0.13 5.46 16 10 O -0.57 -14.42 13.49 -35.23 -0.48 -14.89 16 11 C 0.08 1.61 8.02 -2.84 -0.02 1.58 16 12 N -0.63 -13.11 3.61 -178.10 -0.64 -13.76 16 13 C 0.53 10.54 7.77 -10.99 -0.09 10.45 16 14 O -0.55 -12.28 15.08 5.56 0.08 -12.20 16 15 C 0.04 0.69 5.19 -4.97 -0.03 0.66 16 16 N -0.52 -7.78 4.46 -235.75 -1.05 -8.83 16 17 C 0.01 0.18 5.29 -3.71 -0.02 0.16 16 18 C 0.07 0.86 7.01 37.21 0.26 1.12 16 19 O -0.39 -5.13 10.83 -35.23 -0.38 -5.51 16 20 C 0.07 0.72 7.01 37.21 0.26 0.98 16 21 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 22 C 0.11 2.46 8.23 -2.96 -0.02 2.44 16 23 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 24 H 0.39 9.92 6.60 45.56 0.30 10.22 16 25 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.10 1.40 8.04 -51.93 -0.42 0.98 16 28 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 1.87 5.88 -51.93 -0.31 1.56 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -28.22 313.25 -7.38 -35.60 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.20 Total: 11.19 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -1.07 Total: -44.22 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.77 Total: -32.60 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.22 -7.38 -35.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329399335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.593 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds