Wall clock time and date at job start Mon Mar 30 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 N 1.46906 * 109.47448 * 180.02562 * 15 13 12 17 17 C 1.47016 * 110.99545 * 293.63345 * 16 15 13 18 18 C 1.53093 * 109.25434 * 177.60733 * 17 16 15 19 19 O 1.43007 * 109.26269 * 56.84887 * 18 17 16 20 20 C 1.43016 * 113.73845 * 301.32969 * 19 18 17 21 21 C 1.47009 * 110.99852 * 169.99797 * 16 15 13 22 22 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 25 25 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 26 26 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 27 27 H 1.09005 * 109.46852 * 299.99475 * 15 13 12 28 28 H 1.09001 * 109.47603 * 59.99590 * 15 13 12 29 29 H 1.08999 * 109.50954 * 297.54014 * 17 16 15 30 30 H 1.09000 * 109.50462 * 57.67347 * 17 16 15 31 31 H 1.09006 * 109.50733 * 296.91055 * 18 17 16 32 32 H 1.09006 * 109.54058 * 176.80506 * 18 17 16 33 33 H 1.09001 * 109.50616 * 298.73498 * 20 19 18 34 34 H 1.09002 * 109.54828 * 178.62482 * 20 19 18 35 35 H 1.08998 * 109.51173 * 302.32305 * 21 16 15 36 36 H 1.08998 * 109.50771 * 62.46119 * 21 16 15 37 37 H 1.08993 * 113.76952 * 221.15022 * 22 12 11 38 38 H 1.08995 * 113.86700 * 89.76371 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 7 -0.4166 -7.1637 2.6877 17 6 -0.9801 -7.8244 1.5014 18 6 -1.1110 -9.3252 1.7738 19 8 -1.9164 -9.5248 2.9385 20 6 -1.3966 -8.8953 4.1127 21 6 -1.2686 -7.3900 3.8641 22 6 2.1609 -3.7402 0.0462 23 1 -0.4850 0.8401 0.0004 24 1 -0.3474 -1.7969 -1.0267 25 1 1.3275 -2.4975 2.2141 26 1 -0.3215 -2.8326 1.5249 27 1 0.0892 -5.2437 3.3735 28 1 -1.1565 -5.2861 2.1027 29 1 -1.9634 -7.4067 1.2847 30 1 -0.3204 -7.6654 0.6484 31 1 -0.1219 -9.7530 1.9375 32 1 -1.5808 -9.8113 0.9187 33 1 -0.4158 -9.3106 4.3445 34 1 -2.0727 -9.0697 4.9498 35 1 -0.8195 -6.9140 4.7358 36 1 -2.2564 -6.9654 3.6852 37 1 2.2027 -4.2899 -0.8940 38 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329399335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:48 Heat of formation + Delta-G solvation = -101.583821 kcal Electronic energy + Delta-G solvation = -21310.386134 eV Core-core repulsion = 17960.706966 eV Total energy + Delta-G solvation = -3349.679169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36453 -40.41322 -38.97627 -36.46902 -35.78706 -34.15141 -32.15894 -31.32950 -29.52862 -27.32380 -27.00073 -25.39386 -25.01860 -21.87590 -21.42155 -19.94444 -19.22671 -18.08198 -17.59542 -17.18150 -17.12950 -16.74116 -16.60737 -16.04501 -15.92697 -15.75268 -15.35303 -14.80157 -14.73818 -14.37946 -14.02409 -13.74164 -13.41214 -13.23990 -13.08389 -12.82683 -12.75793 -12.42983 -12.30098 -12.25152 -12.21352 -11.59879 -11.37102 -10.99789 -10.70340 -10.56909 -10.23979 -9.60984 -9.43274 -8.26476 -6.43450 1.48376 1.50820 1.57479 1.62602 1.83036 2.40992 2.70151 2.93535 2.96905 3.41557 3.78474 3.90389 3.93584 4.04664 4.15597 4.18592 4.20881 4.32983 4.37865 4.48059 4.59117 4.60027 4.72042 4.78411 4.79402 4.83028 4.89657 4.95784 4.98029 5.24270 5.70500 5.72554 5.88994 5.93375 6.13510 6.61905 6.84971 7.17623 7.30455 7.43579 8.79217 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043521 B = 0.003897 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.206733 B = 7184.054505 C = 7346.731340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.094 3.906 12 N -0.637 5.637 13 C 0.523 3.477 14 O -0.578 6.578 15 C 0.053 3.947 16 N -0.534 5.534 17 C 0.014 3.986 18 C 0.073 3.927 19 O -0.401 6.401 20 C 0.062 3.938 21 C 0.016 3.984 22 C 0.113 3.887 23 H 0.276 0.724 24 H 0.387 0.613 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -9.149 8.855 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.177 3.823 10 O -0.399 6.399 11 C -0.028 4.028 12 N -0.371 5.371 13 C 0.314 3.686 14 O -0.459 6.459 15 C -0.078 4.078 16 N -0.260 5.260 17 C -0.114 4.114 18 C -0.004 4.004 19 O -0.320 6.320 20 C -0.014 4.014 21 C -0.111 4.111 22 C -0.009 4.009 23 H 0.085 0.915 24 H 0.241 0.759 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.955 -10.619 8.631 14.000 hybrid contribution -0.371 2.083 -0.367 2.147 sum -3.325 -8.536 8.264 12.338 Atomic orbital electron populations 1.69454 1.07056 1.28966 1.50112 1.25710 0.95740 1.02447 0.92623 0.85471 0.78311 0.78159 0.78876 1.20819 1.19182 1.20180 1.21707 0.94158 0.90847 1.52930 0.91059 1.20132 0.85887 0.91746 0.84569 1.86051 1.47501 1.49669 1.56639 1.24131 1.00019 0.77321 1.01376 1.50279 1.40187 1.05154 1.41512 1.20710 0.84108 0.80878 0.82927 1.90578 1.57324 1.39870 1.58149 1.21834 0.96641 0.90378 0.98900 1.61878 1.49190 1.09696 1.05197 1.22882 0.97811 0.96566 0.94132 1.22625 0.95796 0.93231 0.88741 1.87934 1.50691 1.74853 1.18500 1.22849 1.00570 0.89993 0.87995 1.22960 0.95678 0.98893 0.93583 1.23407 0.94092 0.91940 0.91464 0.91467 0.75864 0.88751 0.91319 0.85799 0.91532 0.94621 0.90362 0.92536 0.86875 0.92186 0.85604 0.87454 0.93630 0.92507 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.89 11.20 21.45 0.24 -44.65 16 2 C 0.04 1.71 5.40 84.66 0.46 2.17 16 3 Si 0.97 38.41 29.54 68.60 2.03 40.44 16 4 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.56 -27.20 8.61 25.60 0.22 -26.98 16 8 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 9 C 0.22 10.18 1.40 -10.88 -0.02 10.17 16 10 O -0.59 -29.94 13.49 -148.98 -2.01 -31.95 16 11 C 0.09 3.82 8.02 86.45 0.69 4.51 16 12 N -0.64 -26.02 3.61 -839.59 -3.03 -29.05 16 13 C 0.52 20.57 7.77 87.66 0.68 21.25 16 14 O -0.58 -26.05 15.08 -3.02 -0.05 -26.10 16 15 C 0.05 1.59 5.19 85.56 0.44 2.04 16 16 N -0.53 -15.20 4.46 -899.76 -4.01 -19.21 16 17 C 0.01 0.42 5.29 86.31 0.46 0.87 16 18 C 0.07 1.80 7.01 72.01 0.50 2.30 16 19 O -0.40 -9.75 10.83 -148.98 -1.61 -11.36 16 20 C 0.06 1.19 7.01 72.02 0.50 1.70 16 21 C 0.02 0.34 5.65 86.32 0.49 0.82 16 22 C 0.11 4.88 8.23 86.49 0.71 5.60 16 23 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 24 H 0.39 19.93 6.60 -74.06 -0.49 19.44 16 25 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 26 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.12 3.12 8.04 -2.38 -0.02 3.10 16 28 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 2.77 5.88 -2.39 -0.01 2.75 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.77 8.09 -2.39 -0.02 1.75 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.10 3.97 8.09 -2.39 -0.02 3.95 16 Total: -1.00 -59.36 313.25 -2.73 -62.09 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.57 Total: 35.36 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 5.15 Total: 24.44 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -6.81 Total: -92.91 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -3.67 Total: -69.41 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -59.36 -2.73 -62.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329399335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.497 kcal (2) G-P(sol) polarization free energy of solvation -59.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds