Wall clock time and date at job start Mon Mar 30 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00376 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00396 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00024 * 3 2 1 6 6 H 1.48494 * 109.47213 * 150.00498 * 3 2 1 7 7 C 1.37876 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00507 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00193 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47646 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00396 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00056 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00486 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47491 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.47151 * 120.98153 * 359.97438 * 17 15 14 19 19 C 1.53717 * 108.16446 * 129.42886 * 18 17 15 20 20 O 1.42967 * 109.14561 * 52.53739 * 19 18 17 21 21 C 1.42962 * 114.16617 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98263 * 180.27616 * 17 15 14 23 23 H 0.97000 * 119.99462 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99992 * 9 7 2 25 25 H 1.09000 * 109.47110 * 300.00651 * 9 7 2 26 26 H 0.97001 * 120.00043 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.46801 * 60.00195 * 13 11 10 28 28 H 1.09000 * 109.47461 * 300.00727 * 13 11 10 29 29 H 1.09004 * 109.47066 * 60.00201 * 14 13 11 30 30 H 1.08994 * 109.47405 * 300.00031 * 14 13 11 31 31 H 1.08997 * 109.67944 * 249.20758 * 18 17 15 32 32 H 1.09001 * 109.68346 * 9.76100 * 18 17 15 33 33 H 1.08998 * 109.65611 * 292.57311 * 19 18 17 34 34 H 1.08994 * 109.48424 * 172.39690 * 19 18 17 35 35 H 1.09008 * 109.51186 * 302.65841 * 21 20 19 36 36 H 1.08996 * 109.55507 * 182.53559 * 21 20 19 37 37 H 1.09000 * 109.68250 * 350.23937 * 22 17 15 38 38 H 1.09002 * 109.68088 * 110.79250 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3247 -2.8218 -0.0020 12 8 6.1130 -1.9001 -0.0025 13 6 5.8271 -4.2426 -0.0024 14 6 7.3570 -4.2427 -0.0029 15 6 7.8593 -5.6636 -0.0027 16 8 7.0711 -6.5854 -0.0027 17 7 9.1843 -5.9099 -0.0087 18 6 10.1596 -4.8081 -0.0160 19 6 11.1774 -5.0615 1.1077 20 8 11.7100 -6.3810 0.9691 21 6 10.7387 -7.4213 1.1040 22 6 9.6984 -7.2887 -0.0148 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6807 0.8889 25 1 3.8745 -0.6802 -0.8911 26 1 3.3694 -3.3127 -0.0010 27 1 5.4631 -4.7563 -0.8923 28 1 5.4643 -4.7566 0.8877 29 1 7.7207 -3.7291 0.8871 30 1 7.7201 -3.7288 -0.8928 31 1 10.6709 -4.7769 -0.9781 32 1 9.6464 -3.8624 0.1583 33 1 10.6857 -4.9672 2.0759 34 1 11.9855 -4.3335 1.0373 35 1 10.2453 -7.3355 2.0722 36 1 11.2304 -8.3913 1.0307 37 1 8.8797 -7.9866 0.1605 38 1 10.1643 -7.5026 -0.9767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330602675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:41 Heat of formation + Delta-G solvation = -122.253600 kcal Electronic energy + Delta-G solvation = -20348.095714 eV Core-core repulsion = 16997.520237 eV Total energy + Delta-G solvation = -3350.575478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64385 -39.12403 -38.42822 -35.07417 -34.38431 -33.00622 -32.34847 -31.63034 -28.66897 -27.91440 -25.50407 -24.24952 -22.47845 -21.64753 -19.87667 -19.28670 -17.96037 -16.96825 -16.80384 -16.29779 -16.15668 -15.71303 -15.56120 -15.32296 -15.14189 -14.84291 -14.11154 -13.85525 -13.72717 -13.02922 -12.95051 -12.75258 -12.37816 -12.29399 -12.05098 -11.82682 -11.79905 -11.15410 -11.14401 -11.02059 -10.77765 -10.60147 -10.00050 -9.96689 -9.50863 -9.26410 -8.92952 -8.79191 -8.17700 -6.22301 -4.24704 2.40093 2.52212 3.19290 3.25783 3.32056 3.37376 3.39784 3.89543 4.28746 4.31820 4.37069 4.55182 4.62700 4.77628 4.81109 4.87545 5.06369 5.09454 5.12960 5.17411 5.30271 5.34374 5.42905 5.49806 5.68703 5.85403 5.92600 6.07431 6.63272 6.78155 6.99849 7.05028 7.20027 7.37767 7.89563 8.11352 8.50153 8.73808 8.89832 9.37528 10.89736 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044594 B = 0.003075 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.734330 B = 9104.115718 C = 9601.013852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.565 6.565 13 C -0.126 4.126 14 C -0.121 4.121 15 C 0.519 3.481 16 O -0.538 6.538 17 N -0.622 5.622 18 C 0.070 3.930 19 C 0.046 3.954 20 O -0.381 6.381 21 C 0.048 3.952 22 C 0.076 3.924 23 H 0.268 0.732 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.398 0.602 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.215 -12.818 1.219 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.286 3.714 12 O -0.446 6.446 13 C -0.166 4.166 14 C -0.161 4.161 15 C 0.308 3.692 16 O -0.414 6.414 17 N -0.357 5.357 18 C -0.054 4.054 19 C -0.031 4.031 20 O -0.299 6.299 21 C -0.030 4.030 22 C -0.047 4.047 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.232 0.768 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.323 -12.548 1.188 25.635 hybrid contribution -0.270 0.639 -0.022 0.694 sum 22.052 -11.909 1.166 25.089 Atomic orbital electron populations 1.69887 1.06222 1.27425 1.49411 1.24811 0.94803 0.99196 0.93883 0.86800 0.80534 0.83212 0.79023 1.19855 1.20903 1.18533 1.21109 0.88549 0.95273 1.53301 0.90211 1.19498 0.95280 0.78727 0.96753 1.46193 1.05816 1.11135 1.72040 1.20497 0.83242 0.90690 0.77016 1.90633 1.55568 1.46612 1.51745 1.21378 0.94499 0.95198 1.05573 1.21388 0.96502 0.92518 1.05734 1.20929 0.81188 0.92137 0.74899 1.90699 1.54484 1.46727 1.49509 1.48171 1.05789 1.07028 1.74747 1.22605 0.91335 0.90969 1.00459 1.23087 0.97547 0.85042 0.97452 1.87967 1.34240 1.14478 1.93231 1.23006 0.90485 0.91872 0.97603 1.22285 0.98352 0.84261 0.99783 0.92252 0.95701 0.96146 0.76784 0.88453 0.88485 0.88070 0.87976 0.90175 0.87915 0.92326 0.87385 0.92524 0.87588 0.87977 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.34 27.47 -169.99 -4.67 16.68 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.38 4.50 -5.20 -0.02 5.36 16 10 N -0.70 -14.20 5.55 -61.48 -0.34 -14.54 16 11 C 0.50 9.18 7.83 -10.99 -0.09 9.10 16 12 O -0.56 -12.04 15.98 5.55 0.09 -11.95 16 13 C -0.13 -1.74 4.99 -27.89 -0.14 -1.88 16 14 C -0.12 -1.44 3.36 -27.88 -0.09 -1.53 16 15 C 0.52 6.29 7.71 -10.98 -0.08 6.20 16 16 O -0.54 -8.17 15.45 5.55 0.09 -8.09 16 17 N -0.62 -6.01 3.01 -171.99 -0.52 -6.53 16 18 C 0.07 0.50 6.56 -3.31 -0.02 0.48 16 19 C 0.05 0.31 7.00 37.53 0.26 0.57 16 20 O -0.38 -3.24 10.74 -35.23 -0.38 -3.61 16 21 C 0.05 0.34 6.99 37.33 0.26 0.60 16 22 C 0.08 0.64 6.64 -3.51 -0.02 0.61 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.40 7.18 8.32 -40.82 -0.34 6.84 16 27 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.10 1.13 7.63 -51.93 -0.40 0.73 16 30 H 0.10 1.16 7.96 -51.93 -0.41 0.74 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.68 6.06 -51.93 -0.31 0.36 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.95 7.08 -51.93 -0.37 0.58 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -34.27 316.81 -6.12 -40.39 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.55 Total: 2.37 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.38 Total: 6.29 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.85 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.20 Total: -23.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.27 -6.12 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330602675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.862 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds