Wall clock time and date at job start Mon Mar 30 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00376 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00396 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00024 * 3 2 1 6 6 H 1.48494 * 109.47213 * 150.00498 * 3 2 1 7 7 C 1.37876 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00507 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00193 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47646 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00396 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00056 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00486 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47491 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.47151 * 120.98153 * 359.97438 * 17 15 14 19 19 C 1.53717 * 108.16446 * 129.42886 * 18 17 15 20 20 O 1.42967 * 109.14561 * 52.53739 * 19 18 17 21 21 C 1.42962 * 114.16617 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98263 * 180.27616 * 17 15 14 23 23 H 0.97000 * 119.99462 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99992 * 9 7 2 25 25 H 1.09000 * 109.47110 * 300.00651 * 9 7 2 26 26 H 0.97001 * 120.00043 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.46801 * 60.00195 * 13 11 10 28 28 H 1.09000 * 109.47461 * 300.00727 * 13 11 10 29 29 H 1.09004 * 109.47066 * 60.00201 * 14 13 11 30 30 H 1.08994 * 109.47405 * 300.00031 * 14 13 11 31 31 H 1.08997 * 109.67944 * 249.20758 * 18 17 15 32 32 H 1.09001 * 109.68346 * 9.76100 * 18 17 15 33 33 H 1.08998 * 109.65611 * 292.57311 * 19 18 17 34 34 H 1.08994 * 109.48424 * 172.39690 * 19 18 17 35 35 H 1.09008 * 109.51186 * 302.65841 * 21 20 19 36 36 H 1.08996 * 109.55507 * 182.53559 * 21 20 19 37 37 H 1.09000 * 109.68250 * 350.23937 * 22 17 15 38 38 H 1.09002 * 109.68088 * 110.79250 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3247 -2.8218 -0.0020 12 8 6.1130 -1.9001 -0.0025 13 6 5.8271 -4.2426 -0.0024 14 6 7.3570 -4.2427 -0.0029 15 6 7.8593 -5.6636 -0.0027 16 8 7.0711 -6.5854 -0.0027 17 7 9.1843 -5.9099 -0.0087 18 6 10.1596 -4.8081 -0.0160 19 6 11.1774 -5.0615 1.1077 20 8 11.7100 -6.3810 0.9691 21 6 10.7387 -7.4213 1.1040 22 6 9.6984 -7.2887 -0.0148 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6807 0.8889 25 1 3.8745 -0.6802 -0.8911 26 1 3.3694 -3.3127 -0.0010 27 1 5.4631 -4.7563 -0.8923 28 1 5.4643 -4.7566 0.8877 29 1 7.7207 -3.7291 0.8871 30 1 7.7201 -3.7288 -0.8928 31 1 10.6709 -4.7769 -0.9781 32 1 9.6464 -3.8624 0.1583 33 1 10.6857 -4.9672 2.0759 34 1 11.9855 -4.3335 1.0373 35 1 10.2453 -7.3355 2.0722 36 1 11.2304 -8.3913 1.0307 37 1 8.8797 -7.9866 0.1605 38 1 10.1643 -7.5026 -0.9767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330602675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:40 Heat of formation + Delta-G solvation = -148.581220 kcal Electronic energy + Delta-G solvation = -20349.237365 eV Core-core repulsion = 16997.520237 eV Total energy + Delta-G solvation = -3351.717129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48800 -40.50356 -39.30575 -36.20018 -35.84284 -34.42282 -34.01739 -32.32111 -30.20435 -28.99591 -26.61396 -24.98393 -23.91486 -22.81723 -21.39757 -20.11142 -19.30457 -18.49227 -17.58555 -17.29913 -17.24139 -17.04498 -16.58333 -16.39335 -16.03061 -15.96617 -15.72498 -14.95818 -14.86446 -14.61751 -14.22157 -14.07127 -13.58007 -13.54534 -13.19254 -12.96766 -12.69036 -12.64286 -12.36798 -12.19423 -11.92135 -11.76578 -11.66247 -11.25572 -10.91980 -10.89997 -10.84217 -9.92803 -9.65945 -8.39818 -6.47490 1.34034 1.35763 1.48388 1.48391 1.70959 1.74561 2.28592 2.49913 2.85866 2.95504 3.41448 3.71151 3.80051 4.00045 4.06531 4.07427 4.10190 4.22232 4.27427 4.47977 4.61385 4.65654 4.74996 4.80423 4.80994 4.84543 4.91253 4.93343 5.04175 5.26332 5.34853 5.51818 6.07771 6.08932 6.19850 6.53945 6.82645 7.00597 7.14781 7.37892 8.75171 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044594 B = 0.003075 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.734330 B = 9104.115718 C = 9601.013852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.231 3.769 10 N -0.708 5.708 11 C 0.504 3.496 12 O -0.591 6.591 13 C -0.113 4.113 14 C -0.116 4.116 15 C 0.520 3.480 16 O -0.575 6.575 17 N -0.619 5.619 18 C 0.066 3.934 19 C 0.045 3.955 20 O -0.395 6.395 21 C 0.051 3.949 22 C 0.073 3.927 23 H 0.272 0.728 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.408 0.592 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.407 -12.635 1.214 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.177 4.177 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.107 3.893 10 N -0.358 5.358 11 C 0.291 3.709 12 O -0.473 6.473 13 C -0.154 4.154 14 C -0.156 4.156 15 C 0.310 3.690 16 O -0.455 6.455 17 N -0.353 5.353 18 C -0.056 4.056 19 C -0.032 4.032 20 O -0.313 6.313 21 C -0.026 4.026 22 C -0.049 4.049 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.243 0.757 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.559 -12.387 1.182 27.531 hybrid contribution -0.924 0.508 -0.022 1.055 sum 23.635 -11.879 1.160 26.477 Atomic orbital electron populations 1.69999 1.07843 1.28662 1.50715 1.25672 0.95585 1.02927 0.93515 0.85789 0.79281 0.78916 0.79494 1.18917 1.19940 1.18081 1.21329 0.90196 0.94526 1.52709 0.92595 1.19113 0.93197 0.81087 0.95867 1.46094 1.07039 1.09782 1.72836 1.21180 0.82055 0.92271 0.75348 1.90617 1.55997 1.48044 1.52664 1.21302 0.95917 0.91657 1.06484 1.21340 0.94957 0.92710 1.06572 1.20885 0.81814 0.91639 0.74675 1.90687 1.55600 1.47576 1.51616 1.48264 1.05443 1.08321 1.73290 1.22811 0.91011 0.90446 1.01364 1.23223 0.98084 0.84874 0.97059 1.87954 1.34906 1.15246 1.93224 1.23057 0.90116 0.92652 0.96757 1.22393 0.98305 0.83369 1.00858 0.91854 0.96652 0.96780 0.75665 0.87518 0.87495 0.87181 0.87227 0.89113 0.87144 0.92446 0.85272 0.92872 0.85528 0.89106 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.96 21.45 0.30 -55.77 16 2 C 0.02 1.31 5.47 84.65 0.46 1.77 16 3 Si 0.94 43.67 27.47 68.60 1.88 45.55 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.55 -30.50 9.83 25.60 0.25 -30.25 16 8 H 0.06 3.29 7.84 -2.91 -0.02 3.26 16 9 C 0.23 11.22 4.50 85.63 0.38 11.60 16 10 N -0.71 -28.11 5.55 -466.81 -2.59 -30.70 16 11 C 0.50 17.83 7.83 87.66 0.69 18.52 16 12 O -0.59 -24.33 15.98 -3.04 -0.05 -24.38 16 13 C -0.11 -2.94 4.99 29.85 0.15 -2.79 16 14 C -0.12 -2.52 3.36 29.85 0.10 -2.42 16 15 C 0.52 11.85 7.71 87.66 0.68 12.52 16 16 O -0.57 -17.00 15.45 -3.04 -0.05 -17.05 16 17 N -0.62 -10.91 3.01 -816.44 -2.46 -13.37 16 18 C 0.07 0.80 6.56 86.50 0.57 1.37 16 19 C 0.04 0.49 7.00 72.22 0.51 1.00 16 20 O -0.39 -5.84 10.74 -148.98 -1.60 -7.44 16 21 C 0.05 0.64 6.99 72.10 0.50 1.14 16 22 C 0.07 1.12 6.64 86.37 0.57 1.70 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.02 0.79 7.20 -2.38 -0.02 0.77 16 25 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 26 H 0.41 14.56 8.32 -92.71 -0.77 13.78 16 27 H 0.11 2.63 8.10 -2.38 -0.02 2.61 16 28 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 29 H 0.11 2.21 7.63 -2.38 -0.02 2.19 16 30 H 0.11 2.24 7.96 -2.39 -0.02 2.22 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.18 6.06 -2.39 -0.01 1.16 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.63 7.08 -2.39 -0.02 1.61 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.61 316.81 0.54 -72.07 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.24 Total: 16.93 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 4.86 Total: 14.16 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.75 Total: -99.85 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.70 Total: -48.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -72.61 0.54 -72.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330602675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.507 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds