Wall clock time and date at job start Mon Mar 30 2020 01:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21281 * 119.99806 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00091 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.55416 * 55.69393 * 16 14 13 18 18 C 1.54996 * 110.61805 * 292.81493 * 16 14 13 19 19 C 1.54985 * 102.01313 * 204.59859 * 18 16 14 20 20 C 1.54098 * 104.25323 * 20.66895 * 19 18 16 21 21 H 1.09002 * 110.00288 * 242.67709 * 20 19 18 22 22 C 1.50689 * 109.88142 * 121.59006 * 20 19 18 23 23 N 1.29047 * 119.99939 * 130.71339 * 22 20 19 24 24 O 1.34919 * 120.00150 * 310.71192 * 22 20 19 25 25 O 1.43747 * 107.29504 * 2.16192 * 20 19 18 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 29 29 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 30 30 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 33 33 H 1.09001 * 110.90656 * 322.67729 * 18 16 14 34 34 H 1.09003 * 110.90629 * 86.27759 * 18 16 14 35 35 H 1.08995 * 110.34022 * 262.02592 * 19 18 16 36 36 H 1.08995 * 110.57059 * 139.42223 * 19 18 16 37 37 H 0.97001 * 119.99756 * 179.97438 * 23 22 20 38 38 H 0.96705 * 114.00035 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0368 3.3386 2.6546 17 1 0.7603 4.1082 2.9233 18 6 -0.1024 2.2983 3.7951 19 6 -1.0826 3.0094 4.7624 20 6 -1.7901 4.0581 3.8824 21 1 -1.5684 5.0612 4.2468 22 6 -3.2784 3.8233 3.9017 23 7 -4.0835 4.8047 4.1339 24 8 -3.7693 2.5870 3.6762 25 8 -1.2879 3.9023 2.5446 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8295 -0.0694 -2.9455 32 1 2.2720 2.1230 1.9978 33 1 -0.5314 1.3680 3.4228 34 1 0.8591 2.1169 4.2755 35 1 -0.5334 3.4957 5.5685 36 1 -1.8051 2.2998 5.1655 37 1 -5.0416 4.6536 4.1459 38 1 -4.7344 2.5349 3.7091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330768991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:36 Heat of formation + Delta-G solvation = -108.806087 kcal Electronic energy + Delta-G solvation = -21393.165289 eV Core-core repulsion = 18043.172940 eV Total energy + Delta-G solvation = -3349.992350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36659 -39.06112 -37.89959 -34.98345 -33.38967 -32.65364 -32.05191 -31.07869 -29.65640 -26.96233 -24.65564 -22.91179 -22.33459 -21.04354 -20.27153 -19.32108 -18.46224 -17.46144 -16.73442 -16.11502 -15.54615 -15.40303 -15.05149 -14.63418 -14.47234 -14.09056 -13.91233 -13.68353 -12.99605 -12.67265 -12.26841 -11.89062 -11.76160 -11.57470 -11.44596 -11.24419 -10.98785 -10.94650 -10.81102 -10.31381 -10.20781 -10.15720 -10.05092 -9.91223 -9.61909 -9.05176 -8.86756 -8.49538 -7.82823 -6.12294 -4.21946 1.90844 3.12423 3.24063 3.30683 3.32326 3.34208 3.59629 4.14838 4.23514 4.35212 4.52573 4.70399 4.97980 5.05882 5.18953 5.25517 5.48358 5.54083 5.64006 5.75004 5.80139 5.99030 6.40720 6.47495 6.48299 6.66211 6.68802 7.05133 7.21931 7.37638 7.44808 7.62306 7.73628 7.90510 8.05014 8.18313 8.64937 8.77947 9.12853 9.45388 10.92961 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.004235 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.402206 B = 6609.624580 C = 6895.635690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.526 6.526 16 C 0.056 3.944 17 H 0.096 0.904 18 C -0.140 4.140 19 C -0.146 4.146 20 C 0.142 3.858 21 H 0.112 0.888 22 C 0.376 3.624 23 N -0.739 5.739 24 O -0.516 6.516 25 O -0.331 6.331 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.340 0.660 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 3.316 15.107 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.403 6.403 16 C -0.005 4.005 17 H 0.114 0.886 18 C -0.178 4.178 19 C -0.184 4.184 20 C 0.083 3.917 21 H 0.129 0.871 22 C 0.145 3.855 23 N -0.386 5.386 24 O -0.309 6.309 25 O -0.248 6.248 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.158 0.842 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.162 3.874 14.088 16.736 hybrid contribution -0.032 -0.806 0.323 0.869 sum -8.194 3.068 14.410 16.858 Atomic orbital electron populations 1.21846 0.98317 0.98032 1.01322 1.21939 0.92594 0.99774 1.02305 1.18806 0.94209 0.89161 0.80817 0.93257 1.21225 0.90621 1.38952 1.06473 0.92030 1.24889 0.98601 0.94817 0.95374 1.69899 1.35117 1.37446 1.09423 0.86452 0.84865 0.78411 0.77392 1.20576 1.21096 1.19851 1.46397 1.14095 1.56245 1.18676 1.19807 0.83183 0.79928 0.88085 1.90709 1.51143 1.58626 1.39790 1.23207 0.86205 0.95635 0.95483 0.88633 1.23129 1.00540 0.99324 0.94775 1.23011 0.99007 0.97947 0.98458 1.21474 0.84108 1.00650 0.85479 0.87073 1.24440 0.96033 0.78717 0.86262 1.69566 1.09610 1.33348 1.26120 1.84922 1.27755 1.31972 1.86258 1.89118 1.29689 1.83228 1.22764 0.93171 0.95868 0.94254 0.88256 0.95007 0.92551 0.77990 0.89433 0.88834 0.89348 0.89425 0.84171 0.75180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.73 2.24 -69.09 -0.16 6.58 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.50 11.28 55.43 0.63 -23.88 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.10 5.02 -54.93 -0.28 -14.37 16 14 C 0.51 10.09 5.77 -10.98 -0.06 10.03 16 15 O -0.53 -12.89 13.71 -13.51 -0.19 -13.08 16 16 C 0.06 0.83 3.76 -26.83 -0.10 0.72 16 17 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.14 -1.60 6.59 -24.63 -0.16 -1.76 16 19 C -0.15 -1.38 6.54 -25.11 -0.16 -1.55 16 20 C 0.14 1.72 3.90 -27.31 -0.11 1.62 16 21 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 22 C 0.38 4.51 7.30 -13.45 -0.10 4.42 16 23 N -0.74 -8.58 13.97 32.46 0.45 -8.12 16 24 O -0.52 -5.66 12.95 -16.48 -0.21 -5.88 16 25 O -0.33 -5.48 10.45 -54.30 -0.57 -6.04 16 26 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 29 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 33 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.81 7.31 -51.93 -0.38 0.43 16 37 H 0.34 3.04 8.56 -40.82 -0.35 2.69 16 38 H 0.39 2.35 8.70 45.56 0.40 2.75 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -33.50 315.37 -6.08 -39.59 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.58 Total: 10.14 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.07 Total: 1.60 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.80 Total: -46.38 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.97 Total: -25.00 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.50 -6.08 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.220 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds