Wall clock time and date at job start Mon Mar 30 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 H 1.09002 * 109.46918 * 305.69554 * 3 2 1 5 5 C 1.50704 * 109.47300 * 185.69523 * 3 2 1 6 6 H 1.07996 * 119.99374 * 275.00184 * 5 3 2 7 7 C 1.37877 * 120.00008 * 95.00025 * 5 3 2 8 8 N 1.31517 * 119.99614 * 184.83064 * 7 5 3 9 9 Si 1.86798 * 120.00124 * 4.83088 * 7 5 3 10 10 H 1.48502 * 109.46832 * 84.86134 * 9 7 5 11 11 H 1.48498 * 109.47102 * 204.85986 * 9 7 5 12 12 H 1.48498 * 109.47041 * 324.85927 * 9 7 5 13 13 N 1.46500 * 109.47389 * 65.69234 * 3 2 1 14 14 C 1.34784 * 119.99843 * 275.00401 * 13 3 2 15 15 O 1.21280 * 119.99943 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99873 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.67193 * 302.03091 * 16 14 13 18 18 C 1.54991 * 110.61991 * 64.99652 * 16 14 13 19 19 C 1.54810 * 102.12537 * 155.54414 * 18 16 14 20 20 C 1.54103 * 104.18558 * 339.10186 * 19 18 16 21 21 H 1.09001 * 109.87619 * 117.39717 * 20 19 18 22 22 C 1.50700 * 109.88053 * 238.39547 * 20 19 18 23 23 N 1.29048 * 119.99506 * 15.00227 * 22 20 19 24 24 O 1.34912 * 120.00322 * 195.00230 * 22 20 19 25 25 O 1.43741 * 107.29465 * 357.96994 * 20 19 18 26 26 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47150 * 299.99642 * 1 2 3 28 28 H 1.08993 * 109.47183 * 60.00590 * 1 2 3 29 29 H 1.09002 * 109.46995 * 239.99599 * 2 1 3 30 30 H 1.09002 * 109.46907 * 119.99946 * 2 1 3 31 31 H 0.97000 * 119.99563 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99966 * 94.99760 * 13 3 2 33 33 H 1.08998 * 110.91031 * 37.32644 * 18 16 14 34 34 H 1.09004 * 110.90958 * 273.75560 * 18 16 14 35 35 H 1.09006 * 110.49070 * 97.77804 * 19 18 16 36 36 H 1.09000 * 110.48713 * 220.42728 * 19 18 16 37 37 H 0.96998 * 119.99208 * 180.02562 * 23 22 20 38 38 H 0.96698 * 114.00572 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1650 1.3333 0.7330 7 6 4.1157 1.5892 -1.3857 8 7 5.4205 1.4963 -1.5218 9 14 3.0418 1.9169 -2.8786 10 1 2.7754 3.3739 -2.9865 11 1 3.7401 1.4494 -4.1029 12 1 1.7562 1.1880 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3342 2.6308 0.4660 16 6 0.0671 3.3280 2.6846 17 1 0.1359 2.6260 3.5158 18 6 0.9591 4.5688 2.9430 19 6 0.0622 5.4272 3.8679 20 6 -1.3623 4.8999 3.6078 21 1 -1.7725 4.4735 4.5233 22 6 -2.2443 6.0228 3.1258 23 7 -1.7169 7.1265 2.7148 24 8 -3.5852 5.8741 3.1240 25 8 -1.2637 3.8833 2.5964 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8251 1.5975 -2.3975 32 1 2.2947 2.1151 1.9977 33 1 1.1737 5.0942 2.0124 34 1 1.8819 4.2859 3.4495 35 1 0.3389 5.2797 4.9118 36 1 0.1341 6.4809 3.5983 37 1 -2.2847 7.8493 2.4049 38 1 -4.0663 6.6468 2.7975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330768996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:40 Heat of formation + Delta-G solvation = -106.074946 kcal Electronic energy + Delta-G solvation = -21388.880910 eV Core-core repulsion = 18039.006992 eV Total energy + Delta-G solvation = -3349.873919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36807 -39.15701 -38.04938 -35.10804 -33.59896 -32.57218 -32.07346 -31.30689 -29.62610 -27.48637 -24.85390 -22.79514 -22.40334 -20.50334 -20.40814 -19.53075 -18.76067 -17.54873 -16.60830 -16.40009 -15.94463 -15.71035 -15.32162 -14.48265 -14.27771 -14.04662 -13.80343 -13.59501 -13.31742 -12.77096 -12.28071 -11.93130 -11.90956 -11.83661 -11.77623 -11.54148 -10.96440 -10.93044 -10.66025 -10.65349 -10.09838 -10.03641 -9.98140 -9.91491 -9.83639 -9.21164 -8.97980 -8.69881 -8.00832 -6.24238 -4.27821 1.89730 3.07866 3.21567 3.27387 3.35122 3.43326 3.48483 4.04277 4.32903 4.47615 4.64839 4.75363 4.92536 5.05589 5.10157 5.20641 5.48569 5.53953 5.68542 5.81160 6.04386 6.07647 6.11205 6.15854 6.27011 6.44917 6.62606 6.68526 6.81517 6.98323 7.02574 7.30125 7.36438 7.56546 8.02199 8.13411 8.55600 8.76548 8.98280 9.38240 10.87303 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.004858 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.151469 B = 5762.570289 C = 5946.137217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.530 4.530 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.888 5.888 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.507 3.493 15 O -0.532 6.532 16 C 0.056 3.944 17 H 0.097 0.903 18 C -0.140 4.140 19 C -0.147 4.147 20 C 0.143 3.857 21 H 0.095 0.905 22 C 0.373 3.627 23 N -0.728 5.728 24 O -0.521 6.521 25 O -0.333 6.333 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.340 0.660 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 7.418 12.411 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.349 5.349 14 C 0.290 3.710 15 O -0.409 6.409 16 C -0.005 4.005 17 H 0.114 0.886 18 C -0.178 4.178 19 C -0.184 4.184 20 C 0.083 3.917 21 H 0.113 0.887 22 C 0.142 3.858 23 N -0.376 5.376 24 O -0.315 6.315 25 O -0.249 6.249 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.158 0.842 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.577 6.939 11.615 17.807 hybrid contribution -1.329 0.996 -0.726 1.812 sum -12.906 7.934 10.890 18.658 Atomic orbital electron populations 1.21913 0.97385 0.98897 1.02114 1.22077 0.93669 0.99392 1.01276 1.19188 0.95516 0.89083 0.82634 0.93139 1.20997 0.88593 1.51747 0.95473 0.90264 1.24919 0.94843 0.93628 0.98772 1.69881 1.09744 1.48282 1.24511 0.86932 0.81325 0.79702 0.82260 1.19858 1.21194 1.18309 1.46523 1.13929 1.56046 1.18416 1.19948 0.83166 0.79532 0.88315 1.90693 1.50670 1.58801 1.40783 1.23222 0.83050 0.96504 0.97727 0.88587 1.23096 0.98568 0.94685 1.01475 1.23056 0.91093 1.03848 1.00422 1.21285 0.93897 0.84951 0.91531 0.88705 1.24380 0.80205 0.93084 0.88153 1.69493 1.43363 1.03589 1.21144 1.84878 1.19027 1.46235 1.81348 1.89104 1.30344 1.50674 1.54827 0.95040 0.93146 0.93121 0.92051 0.92933 0.92227 0.77370 0.89386 0.88824 0.89896 0.86889 0.84166 0.75059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.53 37.16 0.32 -2.65 16 2 C -0.12 -2.70 5.59 -26.73 -0.15 -2.85 16 3 C 0.24 5.57 1.89 -69.08 -0.13 5.43 16 4 H 0.05 1.31 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -13.96 9.05 -34.44 -0.31 -14.27 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 9 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.35 6.82 56.52 0.39 -5.96 16 13 N -0.70 -13.63 5.02 -54.93 -0.28 -13.90 16 14 C 0.51 9.81 5.81 -10.98 -0.06 9.74 16 15 O -0.53 -12.54 13.71 -13.48 -0.18 -12.72 16 16 C 0.06 0.82 3.77 -26.83 -0.10 0.72 16 17 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 18 C -0.14 -1.72 6.56 -24.73 -0.16 -1.88 16 19 C -0.15 -1.51 6.55 -25.20 -0.17 -1.68 16 20 C 0.14 1.70 3.95 -27.31 -0.11 1.60 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.37 4.38 7.86 -13.45 -0.11 4.27 16 23 N -0.73 -8.34 12.07 32.47 0.39 -7.94 16 24 O -0.52 -5.35 13.58 -16.46 -0.22 -5.58 16 25 O -0.33 -5.38 10.46 -54.26 -0.57 -5.95 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.03 5.63 -51.93 -0.29 0.73 16 28 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.39 6.55 8.59 -40.82 -0.35 6.20 16 33 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.26 6.36 -51.93 -0.33 0.93 16 37 H 0.34 3.02 8.56 -40.82 -0.35 2.67 16 38 H 0.40 2.09 8.70 45.56 0.40 2.48 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -34.19 313.72 -5.56 -39.75 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.53 Total: 9.07 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.08 Total: 0.63 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.89 Total: -46.94 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.98 Total: -24.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.19 -5.56 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.326 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds