Wall clock time and date at job start Mon Mar 30 2020 01:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 H 1.09002 * 109.46918 * 305.69554 * 3 2 1 5 5 C 1.50704 * 109.47300 * 185.69523 * 3 2 1 6 6 H 1.07996 * 119.99374 * 275.00184 * 5 3 2 7 7 C 1.37877 * 120.00008 * 95.00025 * 5 3 2 8 8 N 1.31517 * 119.99614 * 184.83064 * 7 5 3 9 9 Si 1.86798 * 120.00124 * 4.83088 * 7 5 3 10 10 H 1.48502 * 109.46832 * 84.86134 * 9 7 5 11 11 H 1.48498 * 109.47102 * 204.85986 * 9 7 5 12 12 H 1.48498 * 109.47041 * 324.85927 * 9 7 5 13 13 N 1.46500 * 109.47389 * 65.69234 * 3 2 1 14 14 C 1.34784 * 119.99843 * 275.00401 * 13 3 2 15 15 O 1.21280 * 119.99943 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99873 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.67193 * 302.03091 * 16 14 13 18 18 C 1.54991 * 110.61991 * 64.99652 * 16 14 13 19 19 C 1.54810 * 102.12537 * 155.54414 * 18 16 14 20 20 C 1.54103 * 104.18558 * 339.10186 * 19 18 16 21 21 H 1.09001 * 109.87619 * 117.39717 * 20 19 18 22 22 C 1.50700 * 109.88053 * 238.39547 * 20 19 18 23 23 N 1.29048 * 119.99506 * 15.00227 * 22 20 19 24 24 O 1.34912 * 120.00322 * 195.00230 * 22 20 19 25 25 O 1.43741 * 107.29465 * 357.96994 * 20 19 18 26 26 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47150 * 299.99642 * 1 2 3 28 28 H 1.08993 * 109.47183 * 60.00590 * 1 2 3 29 29 H 1.09002 * 109.46995 * 239.99599 * 2 1 3 30 30 H 1.09002 * 109.46907 * 119.99946 * 2 1 3 31 31 H 0.97000 * 119.99563 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99966 * 94.99760 * 13 3 2 33 33 H 1.08998 * 110.91031 * 37.32644 * 18 16 14 34 34 H 1.09004 * 110.90958 * 273.75560 * 18 16 14 35 35 H 1.09006 * 110.49070 * 97.77804 * 19 18 16 36 36 H 1.09000 * 110.48713 * 220.42728 * 19 18 16 37 37 H 0.96998 * 119.99208 * 180.02562 * 23 22 20 38 38 H 0.96698 * 114.00572 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1650 1.3333 0.7330 7 6 4.1157 1.5892 -1.3857 8 7 5.4205 1.4963 -1.5218 9 14 3.0418 1.9169 -2.8786 10 1 2.7754 3.3739 -2.9865 11 1 3.7401 1.4494 -4.1029 12 1 1.7562 1.1880 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3342 2.6308 0.4660 16 6 0.0671 3.3280 2.6846 17 1 0.1359 2.6260 3.5158 18 6 0.9591 4.5688 2.9430 19 6 0.0622 5.4272 3.8679 20 6 -1.3623 4.8999 3.6078 21 1 -1.7725 4.4735 4.5233 22 6 -2.2443 6.0228 3.1258 23 7 -1.7169 7.1265 2.7148 24 8 -3.5852 5.8741 3.1240 25 8 -1.2637 3.8833 2.5964 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8251 1.5975 -2.3975 32 1 2.2947 2.1151 1.9977 33 1 1.1737 5.0942 2.0124 34 1 1.8819 4.2859 3.4495 35 1 0.3389 5.2797 4.9118 36 1 0.1341 6.4809 3.5983 37 1 -2.2847 7.8493 2.4049 38 1 -4.0663 6.6468 2.7975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330768996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:39 Heat of formation + Delta-G solvation = -136.085084 kcal Electronic energy + Delta-G solvation = -21390.182248 eV Core-core repulsion = 18039.006992 eV Total energy + Delta-G solvation = -3351.175256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49025 -40.33736 -39.18790 -36.88553 -34.47634 -34.42097 -33.58895 -32.57965 -30.75138 -29.29890 -26.02756 -24.56105 -23.42235 -21.98472 -21.40931 -21.19010 -19.65588 -19.23134 -18.01494 -17.63892 -17.25877 -16.80893 -16.71212 -16.11204 -15.73957 -15.31968 -14.91847 -14.78189 -14.60336 -14.47290 -13.83025 -13.78102 -13.69669 -12.97536 -12.92516 -12.72060 -12.62729 -12.50010 -12.31629 -11.88519 -11.83125 -11.68070 -11.20804 -11.07859 -10.86909 -10.83711 -10.81110 -10.48081 -9.71278 -8.38822 -6.43214 1.01839 1.26950 1.32425 1.43158 1.74271 2.13949 2.26472 2.43054 2.96122 3.07562 3.50541 3.74838 3.83711 3.97285 4.11460 4.16886 4.32529 4.39202 4.42168 4.56977 4.68876 4.83245 4.87954 4.97732 5.10716 5.11507 5.25681 5.27510 5.34215 5.42573 5.56458 5.65029 5.78371 5.89327 6.15588 6.62298 6.91962 7.22767 7.28180 7.48956 8.75959 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.004858 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.151469 B = 5762.570289 C = 5946.137217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.241 3.759 4 H 0.024 0.976 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.039 3.961 8 N -0.927 5.927 9 Si 0.917 3.083 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.503 3.497 15 O -0.579 6.579 16 C 0.063 3.937 17 H 0.137 0.863 18 C -0.138 4.138 19 C -0.135 4.135 20 C 0.132 3.868 21 H 0.124 0.876 22 C 0.365 3.635 23 N -0.741 5.741 24 O -0.529 6.529 25 O -0.369 6.369 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.270 0.730 32 H 0.408 0.592 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.350 0.650 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 7.515 14.422 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.137 3.863 4 H 0.042 0.958 5 C -0.560 4.560 6 H 0.082 0.918 7 C -0.162 4.162 8 N -0.566 5.566 9 Si 0.743 3.257 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.183 1.183 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.460 6.460 16 C 0.003 3.997 17 H 0.155 0.845 18 C -0.176 4.176 19 C -0.172 4.172 20 C 0.074 3.926 21 H 0.142 0.858 22 C 0.133 3.867 23 N -0.390 5.390 24 O -0.325 6.325 25 O -0.287 6.287 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.170 0.830 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.577 7.058 13.655 19.861 hybrid contribution -1.082 1.014 -1.295 1.969 sum -13.659 8.072 12.360 20.112 Atomic orbital electron populations 1.21777 0.96156 1.00294 1.00950 1.21988 0.94657 0.97953 1.01547 1.18922 0.93409 0.90265 0.83656 0.95797 1.21195 0.90056 1.50090 0.94672 0.91831 1.25485 0.95555 0.94098 1.01040 1.69960 1.10992 1.50423 1.25176 0.86197 0.80101 0.79045 0.80344 1.20498 1.20239 1.18278 1.46200 1.14802 1.55945 1.17560 1.20792 0.82094 0.78553 0.89682 1.90669 1.51917 1.60409 1.42957 1.23264 0.83295 0.97731 0.95458 0.84527 1.23116 0.99875 0.93724 1.00886 1.23045 0.89572 1.02587 1.02024 1.21665 0.95064 0.84417 0.91503 0.85844 1.24464 0.80783 0.93162 0.88247 1.69501 1.44106 1.04145 1.21241 1.84839 1.18644 1.47666 1.81394 1.89057 1.30848 1.52038 1.56744 0.92249 0.93251 0.95362 0.93131 0.91295 0.92066 0.75564 0.92639 0.85900 0.86014 0.87901 0.83038 0.72890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.53 71.98 0.61 -4.69 16 2 C -0.12 -5.17 5.59 30.59 0.17 -5.00 16 3 C 0.24 11.22 1.89 44.24 0.08 11.30 16 4 H 0.02 1.26 4.73 -2.39 -0.01 1.25 16 5 C -0.52 -27.55 9.05 25.60 0.23 -27.32 16 6 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 7 C 0.04 2.17 5.47 84.65 0.46 2.64 16 8 N -0.93 -54.60 13.96 21.45 0.30 -54.30 16 9 Si 0.92 45.12 26.99 68.60 1.85 46.97 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -12.58 6.82 99.48 0.68 -11.90 16 13 N -0.69 -26.32 5.02 -446.09 -2.24 -28.56 16 14 C 0.50 18.96 5.81 87.65 0.51 19.47 16 15 O -0.58 -27.40 13.71 15.17 0.21 -27.19 16 16 C 0.06 1.68 3.77 30.53 0.12 1.80 16 17 H 0.14 2.57 8.14 -2.38 -0.02 2.55 16 18 C -0.14 -3.05 6.56 31.89 0.21 -2.84 16 19 C -0.13 -2.35 6.55 31.59 0.21 -2.14 16 20 C 0.13 2.80 3.95 30.22 0.12 2.92 16 21 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 22 C 0.36 7.93 7.86 88.52 0.70 8.63 16 23 N -0.74 -15.98 12.07 -166.06 -2.00 -17.99 16 24 O -0.53 -9.98 13.58 -81.81 -1.11 -11.09 16 25 O -0.37 -11.30 10.46 -130.78 -1.37 -12.66 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.94 5.63 -2.39 -0.01 1.93 16 28 H 0.03 1.21 7.89 -2.39 -0.02 1.19 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.41 12.89 8.59 -92.71 -0.80 12.10 16 33 H 0.05 1.59 8.05 -2.39 -0.02 1.57 16 34 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.10 2.06 6.36 -2.39 -0.02 2.05 16 37 H 0.35 5.82 8.56 -92.71 -0.79 5.03 16 38 H 0.41 3.74 8.70 -74.06 -0.64 3.10 16 Total: -1.00 -75.14 313.72 -2.09 -77.24 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.15 Total: 22.83 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 3.42 Total: 4.77 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -3.94 Total: -100.85 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -2.27 Total: -50.95 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.85 Total: 46.97 kcal Total: -75.14 -2.09 -77.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.850 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds