Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.50701 * 109.47594 * 239.99924 * 2 1 3 5 5 H 1.07995 * 120.00513 * 240.00268 * 4 2 1 6 6 C 1.37879 * 119.99680 * 59.99976 * 4 2 1 7 7 N 1.31516 * 119.99888 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47236 * 89.99991 * 8 6 4 10 10 H 1.48497 * 109.47200 * 209.99600 * 8 6 4 11 11 H 1.48493 * 109.47027 * 329.99889 * 8 6 4 12 12 N 1.46503 * 109.47330 * 119.99751 * 2 1 3 13 13 C 1.46502 * 119.99792 * 60.00252 * 12 2 1 14 14 C 1.34776 * 120.00228 * 240.00530 * 12 2 1 15 15 O 1.21282 * 119.99865 * 184.99975 * 14 12 2 16 16 C 1.50693 * 120.00059 * 4.99411 * 14 12 2 17 17 H 1.09008 * 110.42486 * 309.37093 * 16 14 12 18 18 C 1.54481 * 110.37213 * 71.67891 * 16 14 12 19 19 C 1.54514 * 104.06497 * 142.81003 * 18 16 14 20 20 C 1.54481 * 104.05949 * 0.02562 * 19 18 16 21 21 H 1.08997 * 110.46883 * 94.89862 * 20 19 18 22 22 C 1.50704 * 110.36799 * 217.19014 * 20 19 18 23 23 N 1.29036 * 119.99791 * 231.83216 * 22 20 19 24 24 O 1.34922 * 120.00149 * 51.83773 * 22 20 19 25 25 O 1.44419 * 110.37501 * 187.05838 * 16 14 12 26 26 H 1.09004 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47162 * 299.99916 * 1 2 3 28 28 H 1.08999 * 109.47154 * 60.00149 * 1 2 3 29 29 H 0.97002 * 119.99787 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46736 * 265.54053 * 13 12 2 31 31 H 1.09001 * 109.46735 * 25.53328 * 13 12 2 32 32 H 1.08994 * 109.47349 * 145.53749 * 13 12 2 33 33 H 1.08995 * 110.50919 * 24.16442 * 18 16 14 34 34 H 1.09003 * 110.51181 * 261.45328 * 18 16 14 35 35 H 1.08994 * 110.51054 * 241.35856 * 19 18 16 36 36 H 1.09001 * 110.51068 * 118.64382 * 19 18 16 37 37 H 0.97003 * 119.99688 * 179.97438 * 23 22 20 38 38 H 0.96698 * 113.99985 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.2719 -0.6304 3.0256 16 6 3.0646 1.4359 1.9046 17 1 3.4091 1.6387 0.8904 18 6 1.7947 2.2587 2.2157 19 6 2.3310 3.5255 2.9193 20 6 3.8616 3.3184 2.9495 21 1 4.3296 3.8101 2.0967 22 6 4.4369 3.8459 4.2387 23 7 5.4291 4.6705 4.2127 24 8 3.9147 3.4557 5.4200 25 8 4.0418 1.8876 2.8672 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7081 1.1608 -3.4844 30 1 0.7820 -2.1446 2.0659 31 1 1.4521 -2.5767 0.4745 32 1 2.4958 -2.6017 1.9162 33 1 1.1333 1.7035 2.8807 34 1 1.2763 2.5242 1.2942 35 1 1.9348 3.5964 3.9322 36 1 2.0778 4.4171 2.3457 37 1 5.7991 5.0103 5.0425 38 1 4.3496 3.8462 6.1903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330976539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -97.602745 kcal Electronic energy + Delta-G solvation = -21708.091238 eV Core-core repulsion = 18358.584702 eV Total energy + Delta-G solvation = -3349.506536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26829 -39.09063 -37.78950 -35.57804 -33.31232 -32.70662 -32.00401 -30.04766 -29.19314 -26.57737 -25.35370 -23.93678 -21.96652 -21.39869 -20.93133 -18.52732 -18.32205 -16.95421 -16.70160 -16.01943 -15.56878 -15.47258 -14.80339 -14.58553 -14.33191 -14.04131 -13.87520 -13.61718 -13.03325 -12.61376 -12.30323 -11.83445 -11.68601 -11.58456 -11.40647 -11.24505 -11.07967 -10.94882 -10.78517 -10.63404 -10.36155 -10.25218 -10.08137 -9.96197 -9.77794 -9.38220 -8.91903 -8.57968 -7.68108 -6.22911 -4.31172 1.99312 3.17267 3.20153 3.27500 3.28662 3.33580 3.63770 4.19941 4.29447 4.44906 4.71113 4.98166 5.08609 5.10665 5.30570 5.34576 5.56453 5.75627 5.84168 5.92475 6.09318 6.14019 6.17626 6.20945 6.45062 6.55379 6.55607 6.67837 6.78448 6.86977 7.14348 7.36297 7.62315 7.80528 8.05962 8.13028 8.37098 8.70928 8.96176 9.37514 10.81733 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.005207 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.136630 B = 5376.487467 C = 5762.223404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.054 0.946 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.589 5.589 13 C 0.096 3.904 14 C 0.517 3.483 15 O -0.554 6.554 16 C 0.062 3.938 17 H 0.106 0.894 18 C -0.137 4.137 19 C -0.144 4.144 20 C 0.139 3.861 21 H 0.113 0.887 22 C 0.384 3.616 23 N -0.739 5.739 24 O -0.515 6.515 25 O -0.336 6.336 26 H 0.033 0.967 27 H 0.014 0.986 28 H 0.095 0.905 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.340 0.660 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 6.438 9.144 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.150 3.850 3 H 0.071 0.929 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.321 5.321 13 C -0.047 4.047 14 C 0.303 3.697 15 O -0.433 6.433 16 C 0.001 3.999 17 H 0.124 0.876 18 C -0.175 4.175 19 C -0.183 4.183 20 C 0.080 3.920 21 H 0.131 0.869 22 C 0.154 3.846 23 N -0.386 5.386 24 O -0.308 6.308 25 O -0.253 6.253 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.639 6.052 8.572 10.513 hybrid contribution 0.322 -0.124 0.404 0.531 sum 0.961 5.927 8.976 10.799 Atomic orbital electron populations 1.22126 0.97775 1.00127 1.00878 1.19146 0.91706 0.93264 0.80850 0.92889 1.21359 1.32071 1.13509 0.90067 0.91867 1.24871 0.94674 0.94916 0.99017 1.69841 1.36111 1.22582 1.24080 0.86477 0.79379 0.79400 0.82133 1.20525 1.21040 1.19793 1.48164 1.48913 1.11908 1.23071 1.21411 0.99223 0.82513 1.01592 1.19903 0.79171 0.87951 0.82656 1.90628 1.51631 1.68689 1.32386 1.22953 0.89190 0.93509 0.94223 0.87608 1.22911 0.97297 0.94893 1.02413 1.22992 0.93135 0.99325 1.02835 1.21688 0.95572 0.84281 0.90461 0.86923 1.24198 0.86752 0.87162 0.86537 1.69571 1.13343 1.18065 1.37636 1.84933 1.60700 1.69629 1.15556 1.89296 1.55823 1.17577 1.62602 0.94739 0.96726 0.88674 0.92505 0.94130 0.90194 0.92275 0.90160 0.88262 0.89656 0.89303 0.84186 0.75322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.97 37.15 0.33 -2.86 16 2 C 0.25 5.58 2.22 -69.08 -0.15 5.42 16 3 H 0.05 1.20 4.65 -51.93 -0.24 0.95 16 4 C -0.53 -13.19 7.96 -34.44 -0.27 -13.46 16 5 H 0.06 1.61 7.41 -52.49 -0.39 1.22 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -22.53 11.32 55.43 0.63 -21.90 16 8 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.59 -12.46 2.75 -175.26 -0.48 -12.94 16 13 C 0.10 1.84 9.38 59.85 0.56 2.40 16 14 C 0.52 11.18 6.91 -10.99 -0.08 11.11 16 15 O -0.55 -13.54 16.19 -13.55 -0.22 -13.76 16 16 C 0.06 1.14 2.71 -27.11 -0.07 1.07 16 17 H 0.11 1.95 7.07 -51.92 -0.37 1.58 16 18 C -0.14 -2.09 5.97 -25.16 -0.15 -2.24 16 19 C -0.14 -1.83 6.60 -25.16 -0.17 -2.00 16 20 C 0.14 2.02 3.76 -27.10 -0.10 1.92 16 21 H 0.11 1.51 8.13 -51.93 -0.42 1.09 16 22 C 0.38 5.10 7.42 -13.45 -0.10 5.00 16 23 N -0.74 -9.29 13.97 32.47 0.45 -8.84 16 24 O -0.52 -6.09 12.93 -16.49 -0.21 -6.30 16 25 O -0.34 -6.33 10.60 -54.43 -0.58 -6.90 16 26 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 29 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.51 7.09 -51.93 -0.37 1.15 16 32 H 0.06 1.13 7.49 -51.93 -0.39 0.74 16 33 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 34 H 0.10 1.47 7.37 -51.93 -0.38 1.09 16 35 H 0.08 1.05 7.38 -51.93 -0.38 0.66 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.34 3.25 8.56 -40.82 -0.35 2.90 16 38 H 0.39 2.51 8.70 45.56 0.40 2.91 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -30.92 314.01 -5.42 -36.34 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.42 Total: 6.81 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.29 Total: 7.96 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.60 Total: -43.68 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.01 Total: -26.96 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.92 -5.42 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330976539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.267 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds