Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.50701 * 109.47594 * 239.99924 * 2 1 3 5 5 H 1.07995 * 120.00513 * 240.00268 * 4 2 1 6 6 C 1.37879 * 119.99680 * 59.99976 * 4 2 1 7 7 N 1.31516 * 119.99888 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47236 * 89.99991 * 8 6 4 10 10 H 1.48497 * 109.47200 * 209.99600 * 8 6 4 11 11 H 1.48493 * 109.47027 * 329.99889 * 8 6 4 12 12 N 1.46503 * 109.47330 * 119.99751 * 2 1 3 13 13 C 1.46502 * 119.99792 * 60.00252 * 12 2 1 14 14 C 1.34776 * 120.00228 * 240.00530 * 12 2 1 15 15 O 1.21282 * 119.99865 * 184.99975 * 14 12 2 16 16 C 1.50693 * 120.00059 * 4.99411 * 14 12 2 17 17 H 1.09008 * 110.42486 * 309.37093 * 16 14 12 18 18 C 1.54481 * 110.37213 * 71.67891 * 16 14 12 19 19 C 1.54514 * 104.06497 * 142.81003 * 18 16 14 20 20 C 1.54481 * 104.05949 * 0.02562 * 19 18 16 21 21 H 1.08997 * 110.46883 * 94.89862 * 20 19 18 22 22 C 1.50704 * 110.36799 * 217.19014 * 20 19 18 23 23 N 1.29036 * 119.99791 * 231.83216 * 22 20 19 24 24 O 1.34922 * 120.00149 * 51.83773 * 22 20 19 25 25 O 1.44419 * 110.37501 * 187.05838 * 16 14 12 26 26 H 1.09004 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47162 * 299.99916 * 1 2 3 28 28 H 1.08999 * 109.47154 * 60.00149 * 1 2 3 29 29 H 0.97002 * 119.99787 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46736 * 265.54053 * 13 12 2 31 31 H 1.09001 * 109.46735 * 25.53328 * 13 12 2 32 32 H 1.08994 * 109.47349 * 145.53749 * 13 12 2 33 33 H 1.08995 * 110.50919 * 24.16442 * 18 16 14 34 34 H 1.09003 * 110.51181 * 261.45328 * 18 16 14 35 35 H 1.08994 * 110.51054 * 241.35856 * 19 18 16 36 36 H 1.09001 * 110.51068 * 118.64382 * 19 18 16 37 37 H 0.97003 * 119.99688 * 179.97438 * 23 22 20 38 38 H 0.96698 * 113.99985 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.2719 -0.6304 3.0256 16 6 3.0646 1.4359 1.9046 17 1 3.4091 1.6387 0.8904 18 6 1.7947 2.2587 2.2157 19 6 2.3310 3.5255 2.9193 20 6 3.8616 3.3184 2.9495 21 1 4.3296 3.8101 2.0967 22 6 4.4369 3.8459 4.2387 23 7 5.4291 4.6705 4.2127 24 8 3.9147 3.4557 5.4200 25 8 4.0418 1.8876 2.8672 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7081 1.1608 -3.4844 30 1 0.7820 -2.1446 2.0659 31 1 1.4521 -2.5767 0.4745 32 1 2.4958 -2.6017 1.9162 33 1 1.1333 1.7035 2.8807 34 1 1.2763 2.5242 1.2942 35 1 1.9348 3.5964 3.9322 36 1 2.0778 4.4171 2.3457 37 1 5.7991 5.0103 5.0425 38 1 4.3496 3.8462 6.1903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330976539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -122.170279 kcal Electronic energy + Delta-G solvation = -21709.156566 eV Core-core repulsion = 18358.584702 eV Total energy + Delta-G solvation = -3350.571865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.61975 -40.33864 -39.08838 -37.35185 -34.55861 -34.28283 -33.24555 -31.34690 -30.94661 -28.03003 -27.22517 -25.24626 -23.35708 -22.90801 -22.00566 -20.07350 -19.38891 -18.50512 -18.42895 -17.40802 -16.98655 -16.81281 -16.33526 -16.03281 -15.74461 -15.40308 -15.03460 -14.79690 -14.65686 -14.21203 -13.87955 -13.56357 -13.09473 -12.94327 -12.85419 -12.75683 -12.71899 -12.51327 -12.47431 -12.14123 -12.02268 -11.77426 -11.24875 -11.18758 -11.01715 -10.81531 -10.61771 -10.43950 -9.41239 -8.12742 -6.26088 0.96887 1.44862 1.48791 1.55357 1.62410 2.05585 2.37533 2.46943 3.07598 3.16192 3.34498 3.44900 3.75659 3.84184 4.07043 4.14583 4.36823 4.56800 4.62031 4.67715 4.72539 4.83755 4.88631 4.96644 4.98996 5.01847 5.03308 5.09703 5.41775 5.47948 5.63697 5.78507 5.91652 6.00492 6.23608 6.61803 6.82568 7.25018 7.28988 7.45913 8.90211 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.005207 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.136630 B = 5376.487467 C = 5762.223404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.255 3.745 3 H 0.052 0.948 4 C -0.548 4.548 5 H 0.050 0.950 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.590 5.590 13 C 0.094 3.906 14 C 0.510 3.490 15 O -0.589 6.589 16 C 0.063 3.937 17 H 0.102 0.898 18 C -0.130 4.130 19 C -0.132 4.132 20 C 0.128 3.872 21 H 0.121 0.879 22 C 0.380 3.620 23 N -0.745 5.745 24 O -0.524 6.524 25 O -0.365 6.365 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.267 0.733 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.355 0.645 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 7.469 9.302 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.154 3.846 3 H 0.069 0.931 4 C -0.586 4.586 5 H 0.068 0.932 6 C -0.167 4.167 7 N -0.541 5.541 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.321 5.321 13 C -0.049 4.049 14 C 0.297 3.703 15 O -0.471 6.471 16 C 0.002 3.998 17 H 0.120 0.880 18 C -0.168 4.168 19 C -0.170 4.170 20 C 0.070 3.930 21 H 0.139 0.861 22 C 0.149 3.851 23 N -0.394 5.394 24 O -0.320 6.320 25 O -0.283 6.283 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.137 0.863 37 H 0.175 0.825 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.232 7.097 8.748 11.267 hybrid contribution 0.494 -0.447 0.402 0.779 sum 0.727 6.649 9.150 11.334 Atomic orbital electron populations 1.21954 0.96766 1.00075 1.00955 1.19032 0.92322 0.92912 0.80294 0.93082 1.21539 1.32224 1.13419 0.91418 0.93197 1.25400 0.94888 0.95514 1.00936 1.69909 1.36448 1.23116 1.24595 0.85689 0.78556 0.78539 0.79620 1.20146 1.20686 1.20409 1.48226 1.48665 1.12553 1.22656 1.21494 0.99821 0.81685 1.01890 1.20483 0.78455 0.89289 0.82041 1.90596 1.52931 1.69757 1.33772 1.22898 0.90924 0.91858 0.94111 0.88000 1.22877 0.95689 0.95454 1.02818 1.22976 0.91542 0.99047 1.03412 1.21946 0.97114 0.82183 0.91787 0.86119 1.23911 0.87065 0.87465 0.86623 1.69541 1.12961 1.17891 1.39002 1.84884 1.61097 1.69956 1.16103 1.89257 1.56179 1.20260 1.62588 0.94827 0.94628 0.90454 0.92353 0.92247 0.90229 0.92699 0.90756 0.87679 0.89003 0.86342 0.82510 0.72786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.97 71.98 0.65 -5.08 16 2 C 0.26 11.22 2.22 44.24 0.10 11.31 16 3 H 0.05 2.28 4.65 -2.39 -0.01 2.27 16 4 C -0.55 -27.04 7.96 25.60 0.20 -26.84 16 5 H 0.05 2.55 7.41 -2.91 -0.02 2.53 16 6 C 0.03 1.67 5.30 84.65 0.45 2.12 16 7 N -0.90 -45.03 11.32 21.45 0.24 -44.78 16 8 Si 0.95 40.19 29.54 68.60 2.03 42.22 16 9 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.59 -24.84 2.75 -826.79 -2.28 -27.11 16 13 C 0.09 3.57 9.38 127.77 1.20 4.76 16 14 C 0.51 22.10 6.91 87.65 0.61 22.71 16 15 O -0.59 -29.08 16.19 15.23 0.25 -28.84 16 16 C 0.06 2.30 2.71 30.35 0.08 2.38 16 17 H 0.10 3.77 7.07 -2.38 -0.02 3.75 16 18 C -0.13 -3.79 5.97 31.61 0.19 -3.60 16 19 C -0.13 -3.04 6.60 31.61 0.21 -2.83 16 20 C 0.13 3.54 3.76 30.35 0.11 3.66 16 21 H 0.12 3.06 8.13 -2.39 -0.02 3.04 16 22 C 0.38 9.44 7.42 88.52 0.66 10.10 16 23 N -0.74 -17.33 13.97 -166.06 -2.32 -19.65 16 24 O -0.52 -11.43 12.93 -81.91 -1.06 -12.49 16 25 O -0.37 -13.64 10.60 -130.62 -1.38 -15.02 16 26 H 0.03 1.35 7.67 -2.39 -0.02 1.33 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 3.51 6.07 -2.39 -0.01 3.49 16 29 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.08 3.00 7.09 -2.39 -0.02 2.98 16 32 H 0.05 2.11 7.49 -2.39 -0.02 2.10 16 33 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 34 H 0.10 2.92 7.37 -2.39 -0.02 2.90 16 35 H 0.09 2.03 7.38 -2.39 -0.02 2.01 16 36 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.36 6.07 8.56 -92.71 -0.79 5.27 16 38 H 0.41 4.43 8.70 -74.06 -0.64 3.79 16 Total: -1.00 -64.64 314.01 -0.41 -65.05 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.34 Total: 21.95 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 4.45 Total: 18.69 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -4.35 Total: -91.55 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -2.20 Total: -56.35 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -64.64 -0.41 -65.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330976539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.124 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds